Changeset 4276 for branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00
- Timestamp:
- 2013-11-20T10:35:28+01:00 (11 years ago)
- Location:
- branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00
- Files:
-
- 2 edited
-
iodef.xml (modified) (14 diffs)
-
namelist_pisces (modified) (12 diffs)
Legend:
- Unmodified
- Added
- Removed
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branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml
r3771 r4276 21 21 --> 22 22 23 <file_definition type="multiple_file" sync_freq="1d" min_digits="4">23 <file_definition type="multiple_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4"> 24 24 25 25 <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files --> … … 31 31 <file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files --> 32 32 33 <file id=" 1d_grid_T" name="auto" description="ocean T grid variables" >33 <file id="file1" name_suffix="_grid_T" description="ocean T grid variables" > 34 34 <field field_ref="sst" name="sosstsst" /> 35 35 <field field_ref="sss" name="sosaline" /> … … 37 37 </file> 38 38 39 <file id=" 1d_grid_U" name="auto" description="ocean U grid variables" >39 <file id="file2" name_suffix="_grid_U" description="ocean U grid variables" > 40 40 <field field_ref="suoce" name="vozocrtx" /> 41 41 </file> 42 42 43 <file id=" 1d_grid_V" name="auto" description="ocean V grid variables" >43 <file id="file3" name_suffix="_grid_V" description="ocean V grid variables" > 44 44 <field field_ref="svoce" name="vomecrty" /> 45 45 </file> … … 49 49 <file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files --> 50 50 51 <file id=" 5d_grid_T" name="auto" description="ocean T grid variables" >51 <file id="file4" name_suffix="_grid_T" description="ocean T grid variables" > 52 52 <field field_ref="toce" name="votemper" /> 53 53 <field field_ref="soce" name="vosaline" /> … … 58 58 <field field_ref="qsr" name="soshfldo" /> 59 59 <field field_ref="saltflx" name="sosfldow" /> 60 <field field_ref="fmmflx" name="sofmflup" /> 60 61 <field field_ref="qt" name="sohefldo" /> 61 62 <field field_ref="mldr10_1" name="somxl010" /> … … 68 69 </file> 69 70 70 <file id=" 5d_grid_U" name="auto" description="ocean U grid variables" >71 <file id="file5" name_suffix="_grid_U" description="ocean U grid variables" > 71 72 <field field_ref="uoce" name="vozocrtx" /> 72 73 <field field_ref="uoce_eiv" name="vozoeivu" /> … … 74 75 </file> 75 76 76 <file id=" 5d_grid_V" name="auto" description="ocean V grid variables" >77 <file id="file6" name_suffix="_grid_V" description="ocean V grid variables" > 77 78 <field field_ref="voce" name="vomecrty" /> 78 79 <field field_ref="voce_eiv" name="vomeeivv" /> … … 80 81 </file> 81 82 82 <file id=" 5d_grid_W" name="auto" description="ocean W grid variables" >83 <file id="file7" name_suffix="_grid_W" description="ocean W grid variables" > 83 84 <field field_ref="woce" name="vovecrtz" /> 84 85 <field field_ref="avt" name="votkeavt" /> … … 87 88 </file> 88 89 89 <file id=" 5d_icemod" name="auto" description="ice variables" >90 <file id="file8" name_suffix="_icemod" description="ice variables" > 90 91 <field field_ref="ice_pres" /> 91 92 <field field_ref="snowthic_cea" name="isnowthi" /> … … 107 108 <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 108 109 109 <file id=" 1m_ptrc_T" name="auto" description="pisces sms variables" >110 <file id="file9" name_suffix="_ptrc_T" description="pisces sms variables" > 110 111 <field field_ref="DIC" /> 111 112 <field field_ref="Alkalini" /> … … 119 120 </file> 120 121 121 <file id=" 1m_diad_T" name="auto" description="additional pisces diagnostics" >122 <file id="file10" name_suffix="_diad_T" description="additional pisces diagnostics" > 122 123 <field field_ref="Cflx" /> 123 124 <field field_ref="Dpco2" /> … … 132 133 <file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 133 134 134 <file id=" 1y_ptrc_T" name="auto" description="pisces sms variables" >135 <file id="file11" name_suffix="_ptrc_T" description="pisces sms variables" > 135 136 <field field_ref="DIC" /> 136 137 <field field_ref="Alkalini" /> … … 159 160 </file> 160 161 161 <file id=" 1y_diad_T" name="auto" description="additional pisces diagnostics" >162 <file id="file12" name_suffix="_diad_T" description="additional pisces diagnostics" > 162 163 <field field_ref="PH" /> 163 164 <field field_ref="CO3" /> … … 229 230 <axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" /> 230 231 <axis id="nfloat" long_name="Float number" unit="-" /> 232 <axis id="icbcla" long_name="Iceberg class" unit="-" /> 231 233 </axis_definition> 232 234 -
branches/2013/dev_r3856_MERCATOR3_QSRMEAN24H/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces
r3824 r4276 30 30 cn_dir = './' ! root directory for the location of the dynamical files 31 31 ! 32 ln_presatm = . true. ! constant atmopsheric pressure (F) or from a file (T)32 ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T) 33 33 / 34 34 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 39 39 xkmort = 2.E-7 ! half saturation constant for mortality 40 40 ferat3 = 10.E-6 ! Fe/C in zooplankton 41 wsbio2 = 30. ! Big particles sinking speed41 wsbio2 = 50. ! Big particles sinking speed 42 42 niter1max = 1 ! Maximum number of iterations for POC 43 43 niter2max = 1 ! Maximum number of iterations for GOC … … 47 47 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 48 48 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 49 concdno3 = 3.E-6 ! Phosphate half saturation for diatoms49 concdno3 = 3.E-6 ! Phosphate half saturation for diatoms 50 50 concnnh4 = 1.E-7 ! NH4 half saturation for phyto 51 concdnh4 = 3.E-7 ! NH4 half saturation for diatoms52 concnfer = 1.E-9 53 concdfer = 3.E-9 ! Iron half saturation for diatoms51 concdnh4 = 3.E-7 ! NH4 half saturation for diatoms 52 concnfer = 1.E-9 ! Iron half saturation for phyto 53 concdfer = 3.E-9 ! Iron half saturation for diatoms 54 54 concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria 55 55 concbnh4 = 2.5E-8 ! NH4 half saturation for phyto … … 60 60 xsizerd = 3.0 ! Size ratio for diatoms 61 61 xksi1 = 2.E-6 ! half saturation constant for Si uptake 62 xksi2 = 20E-6 ! half saturation constant for Si/C62 xksi2 = 20E-6 ! half saturation constant for Si/C 63 63 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 64 64 qnfelim = 7.E-6 ! Optimal quota of phyto … … 84 84 excret2 = 0.05 ! excretion ratio of diatoms 85 85 ln_newprod = .true. ! Enable new parame. of production (T/F) 86 bresp = 0.0 0333! Basal respiration rate86 bresp = 0.0333 ! Basal respiration rate 87 87 chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton 88 88 chlcdm = 0.05 ! Minimum Chl/C in diatoms … … 106 106 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 107 107 grazrat2 = 0.75 ! maximal mesozoo grazing rate 108 resrat2 = 0.0 05! exsudation rate of mesozooplankton108 resrat2 = 0.01 ! exsudation rate of mesozooplankton 109 109 mzrat2 = 0.03 ! mesozooplankton mortality rate 110 110 xprefc = 1. ! zoo preference for phyto … … 118 118 xthresh2 = 3E-7 ! Food threshold for grazing 119 119 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 120 epsher2 = 0. 3! Efficicency of Mesozoo growth120 epsher2 = 0.4 ! Efficicency of Mesozoo growth 121 121 sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM 122 122 unass2 = 0.3 ! non assimilated fraction of P by mesozoo … … 128 128 part = 0.5 ! part of calcite not dissolved in microzoo gutsa 129 129 grazrat = 3.0 ! maximal zoo grazing rate 130 resrat = 0.0 3! exsudation rate of zooplankton130 resrat = 0.05 ! exsudation rate of zooplankton 131 131 mzrat = 0.004 ! zooplankton mortality rate 132 132 xpref2c = 0.1 ! Microzoo preference for POM … … 138 138 xthresh = 3.E-7 ! Food threshold for feeding 139 139 xkgraz = 20.E-6 ! half sturation constant for grazing 140 epsher = 0. 3! Efficiency of microzoo growth140 epsher = 0.4 ! Efficiency of microzoo growth 141 141 sigma1 = 0.6 ! Fraction of microzoo excretion as DOM 142 142 unass = 0.3 ! non assimilated fraction of phyto by zoo … … 146 146 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 147 147 ln_fechem = .false. ! complex iron chemistry ( T/F ) 148 ln_ligvar = . true. ! variable ligand concentration148 ln_ligvar = .false. ! variable ligand concentration 149 149 xlam1 = 0.005 ! scavenging rate of Iron 150 150 xlamdust = 150.0 ! Scavenging rate of dust … … 154 154 &nampisrem ! parameters for remineralization 155 155 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 156 xremik = 0.3 5! remineralization rate of DOC156 xremik = 0.3 ! remineralization rate of DOC 157 157 xremip = 0.025 ! remineralisation rate of POC 158 158 nitrif = 0.05 ! NH4 nitrification rate … … 261 261 &nampismass ! Mass conservation 262 262 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 263 ln_check_mass = . false. ! Check mass conservation264 / 263 ln_check_mass = .true. ! Check mass conservation 264 /
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