Changeset 4633


Ignore:
Timestamp:
2014-05-12T20:03:04+02:00 (6 years ago)
Author:
cetlod
Message:

3.4 stable : update scripts for running NEMO using libIGCM (IPSL) library

Location:
branches/2012/dev_v3_4_STABLE_2012/NEMOGCM
Files:
9 edited

Legend:

Unmodified
Added
Removed
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/ARCH/CNRS/arch-X64_CURIE.fcm

    r3814 r4633  
    1414# USER_LIB    additional libraries to pass to the linker, e.g. -l<library> 
    1515 
    16 %NCDF_INC            -I$(NETCDF_INC_DIR) 
    17 %NCDF_LIB            -L$(NETCDF_LIB_DIR) -lnetcdff -lnetcdf 
     16%NCDF_INC            -I$(NETCDF_INCDIR) 
     17%NCDF_LIB            -L$(NETCDF_LIBDIR) -lnetcdff -lnetcdf 
    1818%FC                  mpif90 -c -cpp 
    1919# for Curie Fat Node 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM/IGCM00/COMP/opa9.card

    r4142 r4633  
    7373 
    7474[OutputFiles] 
    75 List=   (${PREFIX_WF1}_grid_T.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_T.nc,               Post_1Y_grid_T),\ 
     75List=   (${PREFIX_WF1}_grid_T.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_T.nc,               Post_5D_grid_T),\ 
     76        (${PREFIX_WF1}_grid_U.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_U.nc,               Post_5D_grid_U) ,\ 
     77        (${PREFIX_WF1}_grid_V.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_V.nc,               Post_5D_grid_V),\ 
     78        (${PREFIX_WF1}_grid_W.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_W.nc,               Post_5D_grid_W),\ 
    7679        (${PREFIX_WF2}_grid_T.nc,         ${R_OUT_OCE_WF2}/${PREFIX}_${WF2}_grid_T.nc,               Post_1M_grid_T),\ 
    77         (${PREFIX_WF3}_grid_T.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_T.nc,               Post_1M_grid_T),\ 
    78         (${PREFIX_WF3}_grid_U.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_U.nc,               Post_1M_grid_U) ,\ 
    79         (${PREFIX_WF3}_grid_V.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_V.nc,               Post_1M_grid_V),\ 
    80         (${PREFIX_WF3}_grid_W.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_W.nc,               Post_1M_grid_W),\ 
     80        (${PREFIX_WF3}_grid_T.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_T.nc,               Post_1Y_grid_T),\ 
    8181        (mesh_mask.nc     ,               ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc, NONE),\ 
    8282        (output.abort.nc  ,               ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc,                  NONE),\ 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM/IGCM00/config.card

    r4142 r4633  
    1111#-- (<8 chars MAX for JobName) 
    1212JobName=ORCA2 
     13SpaceName=PROD 
    1314LongName="SCRIPT_V1" 
    1415TagName=ORCA2_LIM2 
     
    8788#D-- OCE - 
    8889[OCE] 
    89 WriteFrequency="1Y 1M 5D" 
     90WriteFrequency="5D 1M 1Y" 
    9091#WriteFrequency="5D" 
    9192Restart= n 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml

    r3295 r4633  
    428428            <field ref="traj_group" name="floats_group"       freq_op="432000" /> 
    429429        </file> 
     430 
     431 
     432        <file id="5d_ptrc_T" name="auto" description="pisces sms variables" > 
     433          <field ref="DIC"      /> 
     434          <field ref="O2"       /> 
     435          <field ref="NCHL"     /> 
     436          <field ref="DCHL"     /> 
     437          <field ref="NO3"      /> 
     438       </file> 
     439 
    430440 
    431441       <file id="5d_diad_T" name="auto" description="additional pisces diagnostics" > 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/IGCM00/COMP/opa9.card

    r4142 r4633  
    7373 
    7474[OutputFiles] 
    75 List=   (${PREFIX_WF1}_grid_T.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_T.nc,               Post_1Y_grid_T),\ 
     75List=   (${PREFIX_WF1}_grid_T.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_T.nc,               Post_5D_grid_T),\ 
     76        (${PREFIX_WF1}_grid_U.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_U.nc,               Post_5D_grid_U) ,\ 
     77        (${PREFIX_WF1}_grid_V.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_V.nc,               Post_5D_grid_V),\ 
     78        (${PREFIX_WF1}_grid_W.nc,         ${R_OUT_OCE_WF1}/${PREFIX}_${WF1}_grid_W.nc,               Post_5D_grid_W),\ 
    7679        (${PREFIX_WF2}_grid_T.nc,         ${R_OUT_OCE_WF2}/${PREFIX}_${WF2}_grid_T.nc,               Post_1M_grid_T),\ 
    77         (${PREFIX_WF3}_grid_T.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_T.nc,               Post_1M_grid_T),\ 
    78         (${PREFIX_WF3}_grid_U.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_U.nc,               Post_1M_grid_U) ,\ 
    79         (${PREFIX_WF3}_grid_V.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_V.nc,               Post_1M_grid_V),\ 
    80         (${PREFIX_WF3}_grid_W.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_W.nc,               Post_1M_grid_W),\ 
     80        (${PREFIX_WF3}_grid_T.nc,         ${R_OUT_OCE_WF3}/${PREFIX}_${WF3}_grid_T.nc,               Post_1Y_grid_T),\ 
    8181        (mesh_mask.nc     ,               ${R_OUT_OCE_O}/${config_UserChoices_JobName}_mesh_mask.nc, NONE),\ 
    8282        (output.abort.nc  ,               ${R_OUT_OCE_D}/${PREFIX}_output.abort.nc,                  NONE),\ 
    8383        (output.init.nc   ,               ${R_OUT_OCE_O_I}/${config_UserChoices_JobName}_${PeriodDateBegin}_output.init.nc, NONE) 
    84  
    8584 
    8685[Post_1Y_grid_T] 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/IGCM00/COMP/pisces.card

    r2528 r4633  
    99[BoundaryFiles] 
    1010List= () 
    11 ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_DIC_nomask.nc, .), \ 
    12             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_Alkalini_nomask.nc, .), \ 
    13             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_O2_nomask.nc, .), \ 
    14             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_NO3_nomask.nc, .), \ 
    15             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_PO4_nomask.nc, .), \ 
    16             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_Si_nomask.nc,  .), \ 
    17             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_DOC_nomask.nc, .), \ 
    18             (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_1m_Fer_nomask.nc, .), \ 
     11ListNonDel= (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_DIC_nomask.nc, .), \ 
     12            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_Alkalini_nomask.nc, .), \ 
     13            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_O2_nomask.nc, .), \ 
     14            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_NO3_nomask.nc, .), \ 
     15            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_PO4_nomask.nc, .), \ 
     16            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_Si_nomask.nc,  .), \ 
     17            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_DOC_nomask.nc, .), \ 
     18            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/data_Fer_nomask.nc, .), \ 
    1919            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/kRGB61.txt, .), \ 
    2020            (${R_BC}/OCE/${config_UserChoices_TagName}/${opa9_UserChoices_OPA_version}/dust.orca.nc, .), \ 
     
    3636List=   (${PREFIX_WFT1}_ptrc_T.nc, ${R_OUT_MBG_WFT1}/${PREFIX}_${WFT1}_ptrc_T.nc, NONE), \ 
    3737        (${PREFIX_WFT1}_diad_T.nc, ${R_OUT_MBG_WFT1}/${PREFIX}_${WFT1}_diad_T.nc, NONE), \ 
    38         (${PREFIX_WFT2}_ptrc_T.nc, ${R_OUT_MBG_WFT2}/${PREFIX}_${WFT2}_ptrc_T.nc, Post_1M_ptrc_T), \ 
    39         (${PREFIX_WFT3}_diad_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_diad_T.nc, Post_5D_ptrc_T) 
     38        (${PREFIX_WFT2}_ptrc_T.nc, ${R_OUT_MBG_WFT2}/${PREFIX}_${WFT2}_ptrc_T.nc, NONE), \ 
     39        (${PREFIX_WFT3}_ptrc_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_ptrc_T.nc, NONE), \ 
     40        (${PREFIX_WFT3}_diad_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_diad_T.nc, NONE) 
    4041 
     42 
     43[Post_1M_ptrc_T] 
     44Patches= () 
     45GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter) 
     46TimeSeriesVars = (DCHL, NCHL, NO3) 
     47 
     48[Post_5D_diad_T] 
     49Patches = () 
     50GatherWithInternal = (nav_lon, nav_lat, time_counter) 
     51TimeSeriesVars = (Cflx) 
     52 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/IGCM00/config.card

    r4142 r4633  
    1111#-- (<8 chars MAX for JobName) 
    1212JobName=OR2LP 
     13SpaceName=PROD 
    1314LongName="SCRIPT_V1" 
    1415TagName=ORCA2_LIM2_PISCES 
     
    8788#D-- OCE - 
    8889[OCE] 
    89 WriteFrequency="1Y 1M 5D" 
     90WriteFrequency="5D 1M 1Y" 
     91#WriteFrequency="5D" 
    9092Restart= n 
    9193##-- Last day of the experience used as restart 
     
    113115#D-- MBG - 
    114116[MBG] 
    115 WriteFrequency="1Y 1M 5D" 
     117WriteFrequency="5D 1M 1Y" 
    116118Restart= n 
    117119##-- Last day of the experience used as restart 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/IGCM00/COMP/pisces.card

    r2528 r4633  
    88#-- available directories are:  v3, cpl 
    99#-- NOTE: if you use your own directory you have to comment it 
    10 OPA_dyn=v3 
     10OPA_version=v3_4 
    1111#============================================================== 
    1212 
     
    1616[BoundaryFiles] 
    1717List= () 
    18 ListNonDel= (${R_BC}/${config_UserChoices_TagName}/DYN/${pisces_UserChoices_OPA_dyn}/NEMOV3_mesh_mask.nc, mesh_mask.nc), \ 
    19             (${R_BC}/${config_UserChoices_TagName}/DYN/${pisces_UserChoices_OPA_dyn}/NEMOV3_5d_21210101_21211231_grid_T.nc, .), \ 
    20             (${R_BC}/${config_UserChoices_TagName}/DYN/${pisces_UserChoices_OPA_dyn}/NEMOV3_5d_21210101_21211231_grid_U.nc, .), \ 
    21             (${R_BC}/${config_UserChoices_TagName}/DYN/${pisces_UserChoices_OPA_dyn}/NEMOV3_5d_21210101_21211231_grid_V.nc, .), \ 
    22             (${R_BC}/${config_UserChoices_TagName}/DYN/${pisces_UserChoices_OPA_dyn}/NEMOV3_5d_21210101_21211231_grid_W.nc, .), \ 
    23             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_DIC_nomask.nc, .), \ 
    24             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_Alkalini_nomask.nc, .), \ 
    25             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_O2_nomask.nc, .), \ 
    26             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_NO3_nomask.nc, .), \ 
    27             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_PO4_nomask.nc, .), \ 
    28             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_Si_nomask.nc,  .), \ 
    29             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_DOC_nomask.nc, .), \ 
    30             (${R_BC}/${config_UserChoices_TagName}/INI/data_1m_Fer_nomask.nc, .), \ 
    31             (${R_BC}/${config_UserChoices_TagName}/ANC/kRGB61.txt, .), \ 
    32             (${R_BC}/${config_UserChoices_TagName}/ANC/dust.orca.nc, .), \ 
    33             (${R_BC}/${config_UserChoices_TagName}/ANC/bathy.orca.nc, .), \ 
    34             (${R_BC}/${config_UserChoices_TagName}/ANC/river.orca.nc, .), \ 
    35             (${R_BC}/${config_UserChoices_TagName}/ANC/ndeposition.orca.nc, .) 
     18ListNonDel= (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/NEMONEW_mesh_mask.nc, mesh_mask.nc), \ 
     19            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/NEMONEW_5d_21210101_21211231_grid_T.nc, dyna_grid_T.nc), \ 
     20            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/NEMONEW_5d_21210101_21211231_grid_U.nc, dyna_grid_U.nc)), \ 
     21            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/NEMONEW_5d_21210101_21211231_grid_V.nc, dyna_grid_V.nc)), \ 
     22            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/NEMONEW_5d_21210101_21211231_grid_W.nc, dyna_grid_W.nc)), \ 
     23            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_DIC_nomask.nc, .), \ 
     24            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_Alkalini_nomask.nc, .), \ 
     25            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_O2_nomask.nc, .), \ 
     26            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_NO3_nomask.nc, .), \ 
     27            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_PO4_nomask.nc, .), \ 
     28            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_Si_nomask.nc,  .), \ 
     29            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_DOC_nomask.nc, .), \ 
     30            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/data_Fer_nomask.nc, .), \ 
     31            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/kRGB61.txt, .), \ 
     32            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/dust.orca.nc, .), \ 
     33            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/bathy.orca.nc, .), \ 
     34            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/river.orca.nc, .), \ 
     35            (${R_BC}/${config_UserChoices_TagName}/${pisces_UserChoices_OPA_version}/ndeposition.orca.nc, .) 
    3636 
    3737[ParametersFiles] 
     
    4848List=   (ocean.output) 
    4949 
     50 
    5051[OutputFiles] 
    5152List=   (${PREFIX_WFT1}_ptrc_T.nc, ${R_OUT_MBG_WFT1}/${PREFIX}_${WFT1}_ptrc_T.nc, NONE), \ 
    5253        (${PREFIX_WFT1}_diad_T.nc, ${R_OUT_MBG_WFT1}/${PREFIX}_${WFT1}_diad_T.nc, NONE), \ 
    53         (${PREFIX_WFT2}_ptrc_T.nc, ${R_OUT_MBG_WFT2}/${PREFIX}_${WFT2}_ptrc_T.nc, Post_1M_ptrc_T), \ 
    54         (${PREFIX_WFT3}_diad_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_diad_T.nc, Post_5D_diad_T) 
     54        (${PREFIX_WFT2}_ptrc_T.nc, ${R_OUT_MBG_WFT2}/${PREFIX}_${WFT2}_ptrc_T.nc, NONE), \ 
     55        (${PREFIX_WFT3}_ptrc_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_ptrc_T.nc, NONE), \ 
     56        (${PREFIX_WFT3}_diad_T.nc, ${R_OUT_MBG_WFT3}/${PREFIX}_${WFT3}_diad_T.nc, NONE) 
     57 
    5558 
    5659[Post_1M_ptrc_T] 
  • branches/2012/dev_v3_4_STABLE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/IGCM00/config.card

    r4142 r4633  
    1111#-- (<8 chars MAX for JobName) 
    1212JobName=PISCES 
     13SpaceName=PROD 
    1314LongName="SCRIPT_V1" 
    1415TagName=ORCA2_OFF_PISCES 
     
    8485[MBG] 
    8586##-- frequency  
    86 WriteFrequency="1Y 1M 5D" 
     87WriteFrequency="5D 1M 1Y" 
    8788##--  restart 
    8889Restart= n 
Note: See TracChangeset for help on using the changeset viewer.