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Changeset 4996 for trunk/NEMOGCM/CONFIG – NEMO

Changeset 4996 for trunk/NEMOGCM/CONFIG


Ignore:
Timestamp:
2014-12-22T12:56:38+01:00 (9 years ago)
Author:
cetlod
Message:

trunk : New diagnostics in PISCES model, see ticket #1424

Location:
trunk/NEMOGCM/CONFIG
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • trunk/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml

    r4696 r4996  
    4646     <field field_ref="svoce"        name="vos"     long_name="sea_surface_y_velocity"    /> 
    4747   </file> 
    48     
     48 
     49        <file id="file4" name_suffix="_bioscalar" description="pisces sms variables" > 
     50          <field field_ref="tdenit"   name="tdenit"   unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field> 
     51          <field field_ref="tnfix"    name="tnfix"    unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field> 
     52          <field field_ref="tcflx"    name="tcflx"    unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field> 
     53          <field field_ref="tcflxcum" name="tcflxcum" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field> 
     54          <field field_ref="tcexp"    name="tcexp"    unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field> 
     55          <field field_ref="tintpp"   name="tintpp"   unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field> 
     56          <field field_ref="pno3tot"  name="pno3tot"  unit="umolN"  > pno3tot * 16. / 122. * 1e6 </field> 
     57          <field field_ref="psiltot"  name="psiltot"  unit="umolC"  > psiltot * 1e6  </field> 
     58          <field field_ref="palktot"  name="palktot"  unit="umolC"  > palktot * 1e6  </field> 
     59        <field field_ref="pfertot"  name="pfertot"  unit="nmolFe" > pfertot * 1e9  </field> 
     60                                                                                                                             </file> 
    4961      </file_group> 
    5062 
     
    5365      <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE.">  <!-- 5d files -->    
    5466 
    55    <file id="file4" name_suffix="_grid_T" description="ocean T grid variables" > 
     67   <file id="file5" name_suffix="_grid_T" description="ocean T grid variables" > 
    5668     <field field_ref="toce"         name="thetao"   long_name="sea_water_potential_temperature"               /> 
    5769     <field field_ref="soce"         name="so"       long_name="sea_water_salinity"                            /> 
     
    7284   </file> 
    7385    
    74    <file id="file5" name_suffix="_grid_U" description="ocean U grid variables" > 
     86   <file id="file6" name_suffix="_grid_U" description="ocean U grid variables" > 
    7587     <field field_ref="uoce"         name="uo"      long_name="sea_water_x_velocity"      /> 
    7688     <field field_ref="suoce"        name="uos"     long_name="sea_surface_x_velocity"    /> 
     
    8193   </file> 
    8294    
    83    <file id="file6" name_suffix="_grid_V" description="ocean V grid variables" > 
     95   <file id="file7" name_suffix="_grid_V" description="ocean V grid variables" > 
    8496     <field field_ref="voce"         name="vo"      long_name="sea_water_y_velocity"      /> 
    8597     <field field_ref="svoce"        name="vos"     long_name="sea_surface_y_velocity"    /> 
     
    90102   </file> 
    91103    
    92    <file id="file7" name_suffix="_grid_W" description="ocean W grid variables" > 
     104   <file id="file8" name_suffix="_grid_W" description="ocean W grid variables" > 
    93105     <field field_ref="woce"         name="wo"      long_name="ocean vertical velocity"         /> 
    94106     <field field_ref="avt"          name="difvho"  long_name="ocean_vertical_heat_diffusivity" /> 
    95107   </file> 
    96108    
    97    <file id="file8" name_suffix="_icemod" description="ice variables" > 
     109   <file id="file9" name_suffix="_icemod" description="ice variables" > 
    98110     <field field_ref="ice_pres"                     /> 
    99111     <field field_ref="snowthic_cea" name="snd"     long_name="surface_snow_thickness"   /> 
     
    114126      <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 
    115127 
    116    <file id="file9" name_suffix="_ptrc_T" description="pisces sms variables" > 
     128   <file id="file10" name_suffix="_ptrc_T" description="pisces sms variables" > 
    117129          <field field_ref="DIC"      /> 
    118130          <field field_ref="Alkalini" /> 
     
    126138   </file> 
    127139    
    128    <file id="file10" name_suffix="_diad_T" description="additional pisces diagnostics" > 
     140   <file id="file11" name_suffix="_diad_T" description="additional pisces diagnostics" > 
    129141          <field field_ref="Cflx"     /> 
    130142          <field field_ref="Dpco2"    /> 
     
    140152      <file_group id="1y"  output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 
    141153 
    142    <file id="file11" name_suffix="_ptrc_T" description="pisces sms variables" > 
     154   <file id="file12" name_suffix="_ptrc_T" description="pisces sms variables" > 
    143155          <field field_ref="DIC"      /> 
    144156          <field field_ref="Alkalini" /> 
     
    167179   </file> 
    168180 
    169    <file id="file12" name_suffix="_diad_T" description="additional pisces diagnostics" > 
     181   <file id="file13" name_suffix="_diad_T" description="additional pisces diagnostics" > 
    170182          <field field_ref="PH"       /> 
    171183          <field field_ref="CO3"      /> 
  • trunk/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml

    r4153 r4996  
    3030      <file_group id="6h" output_freq="6h"  output_level="10" enabled=".TRUE."/> <!-- 6h files --> 
    3131      
    32       <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE."/> <!-- 1d files --> 
     32      <file_group id="1d" output_freq="1d"  output_level="10" enabled=".TRUE."> <!-- 1d files --> 
     33        <file id="file1" name_suffix="_bioscalar" description="pisces sms variables" > 
     34           <field field_ref="tdenit"   name="tdenit"   unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field> 
     35           <field field_ref="tnfix"    name="tnfix"    unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field> 
     36           <field field_ref="tcflx"    name="tcflx"    unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field> 
     37           <field field_ref="tcflxcum" name="tcflxcum" unit="PgC"    operation="instant" > tcflxcum * -1. * 12. / 1e15 </field> 
     38           <field field_ref="tcexp"    name="tcexp"    unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field> 
     39           <field field_ref="tintpp"   name="tintpp"   unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field> 
     40           <field field_ref="pno3tot"  name="pno3tot"  unit="umolN"  > pno3tot * 16. / 122. * 1e6 </field> 
     41           <field field_ref="psiltot"  name="psiltot"  unit="umolC"  > psiltot * 1e6  </field> 
     42           <field field_ref="palktot"  name="palktot"  unit="umolC"  > palktot * 1e6  </field> 
     43           <field field_ref="pfertot"  name="pfertot"  unit="nmolFe" > pfertot * 1e9  </field> 
     44        </file> 
     45      </file_group> 
     46 
    3347      <file_group id="3d" output_freq="3d"  output_level="10" enabled=".TRUE."/> <!-- 3d files -->     
    3448      <file_group id="5d" output_freq="5d"  output_level="10" enabled=".TRUE."/>  <!-- 5d files -->    
     
    3650      <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 
    3751 
    38    <file id="file1" name_suffix="_ptrc_T" description="pisces sms variables" > 
     52   <file id="file2" name_suffix="_ptrc_T" description="pisces sms variables" > 
    3953          <field field_ref="DIC"      /> 
    4054          <field field_ref="Alkalini" /> 
     
    4862   </file> 
    4963    
    50    <file id="file2" name_suffix="_diad_T" description="additional pisces diagnostics" > 
     64   <file id="file3" name_suffix="_diad_T" description="additional pisces diagnostics" > 
    5165          <field field_ref="Cflx"     /> 
    5266          <field field_ref="Dpco2"    /> 
     
    6175      <file_group id="1y"  output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 
    6276 
    63    <file id="file3" name_suffix="_ptrc_T" description="pisces sms variables" > 
     77   <file id="file4" name_suffix="_ptrc_T" description="pisces sms variables" > 
    6478          <field field_ref="DIC"      /> 
    6579          <field field_ref="Alkalini" /> 
     
    88102   </file> 
    89103 
    90    <file id="file4" name_suffix="_diad_T" description="additional pisces diagnostics" > 
     104   <file id="file5" name_suffix="_diad_T" description="additional pisces diagnostics" > 
    91105          <field field_ref="PH"       /> 
    92106          <field field_ref="CO3"      /> 
  • trunk/NEMOGCM/CONFIG/SHARED/field_def.xml

    r4990 r4996  
    599599       <field id="EPSI100"     long_name="Export of Silicate at 100 m"             unit="mol/m2/s"                     /> 
    600600       <field id="EPCAL100"    long_name="Export of Calcite at 100 m"              unit="mol/m2/s"                     /> 
     601       <field id="EXPC"        long_name="Export of carbon"                        unit="molC/m2/s"  grid_ref="grid_T_3D" /> 
     602       <field id="EXPFE"       long_name="Export of biogenic iron"                 unit="molFe/m2/s" grid_ref="grid_T_3D" /> 
     603       <field id="EXPSI"       long_name="Export of Silicate"                      unit="molSi/m2/s" grid_ref="grid_T_3D" /> 
     604       <field id="EXPCAL"      long_name="Export of Calcite"                       unit="molC/m2/s"  grid_ref="grid_T_3D" /> 
    601605       <field id="Cflx"        long_name="DIC flux"                                unit="mol/m2/s"                     /> 
    602606       <field id="Oflx"        long_name="Oxygen flux"                             unit="mol/m2/s"                     /> 
     
    608612       <field id="Ironsed"     long_name="Iron deposition from sediment"           unit="mol/m2/s"  grid_ref="grid_T_3D"/> 
    609613 
     614 
    610615       <!-- PISCES with Kriest parametisation : variables available with key_kriest --> 
    611        <field id="POCFlx"      long_name="Particulate organic C flux"              unit="mol/m2/s"   grid_ref="grid_T_3D" /> 
    612        <field id="NumFlx"      long_name="Particle number flux"                    unit="nbr/m2/s"   grid_ref="grid_T_3D" /> 
    613        <field id="SiFlx"       long_name="Biogenic Si flux"                        unit="mol/m2/s"   grid_ref="grid_T_3D" /> 
    614        <field id="CaCO3Flx"    long_name="CaCO3 flux"                              unit="mol/m2/s"   grid_ref="grid_T_3D" /> 
    615        <field id="xnum"        long_name="Number of particles in aggregats"        unit="-"          grid_ref="grid_T_3D" /> 
    616        <field id="W1"          long_name="sinking speed of mass flux"              unit="m2/s"       grid_ref="grid_T_3D" /> 
    617        <field id="W2"          long_name="sinking speed of number flux"            unit="m2/s"       grid_ref="grid_T_3D" /> 
     616       <field id="EPN100"      long_name="Particulate number flux at 100 m"        unit="mol/m2/s"                     /> 
     617       <field id="EXPN"        long_name="Particulate number flux"                 unit="mol/m2/s"   grid_ref="grid_T_3D" /> 
     618       <field id="XNUM"        long_name="Number of particles in aggregats"        unit="-"          grid_ref="grid_T_3D" /> 
     619       <field id="WSC"         long_name="sinking speed of mass flux"              unit="m2/s"       grid_ref="grid_T_3D" /> 
     620       <field id="WSN"         long_name="sinking speed of number flux"            unit="m2/s"       grid_ref="grid_T_3D" /> 
     621 
     622      <!-- dbio_T on T grid : variables available with key_diaar5 --> 
     623       <field id="TPP"         long_name="Total Primary production of phyto"                   unit="molC/m3/s"  grid_ref="grid_T_3D" /> 
     624       <field id="TPNEW"       long_name="New Primary production of phyto"                     unit="molC/m3/s"  grid_ref="grid_T_3D" /> 
     625       <field id="TPBFE"       long_name="Total biogenic iron production"                      unit="molFe/m3/s" grid_ref="grid_T_3D" /> 
     626       <field id="INTDIC"      long_name="DIC content"                                         unit="kg/m2"   /> 
     627       <field id="O2MIN"       long_name="Oxygen minimum concentration"                        unit="molC/L" /> 
     628       <field id="ZO2MIN"      long_name="Depth of oxygen minimum concentration"               unit="m"       /> 
     629       <field id="INTNFIX"     long_name="Nitrogen fixation rate : vert. integrated"           unit="molN/m2/s"  /> 
     630       <field id="INTPPPHY"    long_name="Vertically integrated primary production by nanophy" unit="molC/m2/s"  /> 
     631       <field id="INTPPPHY2"   long_name="Vertically integrated primary production by diatom"  unit="molC/m2/s"  /> 
     632       <field id="INTPP"       long_name="Vertically integrated primary production by phyto"   unit="molC/m2/s"  /> 
     633       <field id="INTPNEW"     long_name="Vertically integrated new primary production"        unit="molC/m2/s"  /> 
     634       <field id="INTPBFE"     long_name="Vertically integrated of biogenic iron production"   unit="molFe/m2/s" /> 
     635       <field id="INTPBSI"     long_name="Vertically integrated of biogenic Si production"     unit="molSi/m2/s" /> 
     636       <field id="INTPCAL"     long_name="Vertically integrated of calcite production"         unit="molC/m2/s" /> 
    618637 
    619638       <!-- PISCES light : variables available with key_pisces_reduced --> 
     
    647666       <field id="qintC14b"    long_name="Cumulative air-sea flux of Bomb C14"      unit="mol/m2"     /> 
    648667       <field id="fdecay"      long_name="Radiactive decay of Bomb C14"             unit="mol/m3"  grid_ref="grid_T_3D"  /> 
     668     </field_group> 
     669 
     670    <field_group id="PISCES_scalar"  domain_ref="1point" > 
     671       <field id="pno3tot"         long_name="global mean nitrate concentration"                  unit="mol/l"   /> 
     672       <field id="psiltot"         long_name="global mean silicate concentration"                 unit="mol/l"   /> 
     673       <field id="palktot"         long_name="global mean alkalinity concentration"               unit="mol/l"   /> 
     674       <field id="pfertot"         long_name="global mean iron concentration"                     unit="mol/l"   /> 
     675       <field id="tcflx"           long_name="total Flux of Carbon out of the ocean"              unit="molC/s" /> 
     676       <field id="tcflxcum"        long_name="cumulative total Flux of Carbon out of the ocean"   unit="molC/s" /> 
     677       <field id="tcexp"           long_name="total Carbon export at 100m"                        unit="molC/s" /> 
     678       <field id="tintpp"          long_name="global total integrated primary production"         unit="molC/s" /> 
     679       <field id="tnfix"           long_name="global total nitrogen fixation"                     unit="molN/s" /> 
     680       <field id="tdenit"          long_name="Total denitrification"                              unit="molN/s" /> 
    649681     </field_group> 
    650682 
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