- Timestamp:
- 2016-03-08T11:12:40+01:00 (8 years ago)
- Location:
- branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC
- Files:
-
- 31 edited
Legend:
- Unmodified
- Added
- Removed
-
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zbio.F90
r6371 r6372 599 599 600 600 !!====================================================================== 601 END MODULE p2zbio601 END MODULE p2zbio -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P2Z/p2zsms.F90
r6371 r6372 84 84 85 85 !!====================================================================== 86 END MODULE p2zsms86 END MODULE p2zsms -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zbio.F90
r6371 r6372 109 109 110 110 !!====================================================================== 111 END MODULE p4zbio 111 END MODULE p4zbio 112 -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zche.F90
r6371 r6372 31 31 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sio3eq ! chemistry of Si 32 32 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fekeq ! chemistry of Fe 33 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,: ):: chemc ! Solubilities of O2 and CO234 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: chemo2 ! Solubilities of O2 and CO233 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: chemc ! Solubilities of O2 and CO2 34 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: chemo2 ! Solubilities of O2 and CO2 35 35 36 36 REAL(wp), PUBLIC :: atcox = 0.20946 ! units atm … … 76 76 REAL(wp) :: st1 = 0.14 ! constants for calculate concentrations for sulfate 77 77 REAL(wp) :: st2 = 1./96.062 ! (Morris & Riley 1966) 78 REAL(wp) :: ks0 = 141.328 79 REAL(wp) :: ks1 = -4276.1 80 REAL(wp) :: ks2 = -23.093 81 REAL(wp) :: ks3 = -13856. 82 REAL(wp) :: ks4 = 324.57 83 REAL(wp) :: ks5 = -47.986 84 REAL(wp) :: ks6 = 35474. 85 REAL(wp) :: ks7 = -771.54 86 REAL(wp) :: ks8 = 114.723 87 REAL(wp) :: ks9 = -2698. 88 REAL(wp) :: ks10 = 1776. 89 REAL(wp) :: ks11 = 1. 90 REAL(wp) :: ks12 = -0.001005 78 91 79 92 REAL(wp) :: ft1 = 0.000067 ! constants for calculate concentrations for fluorides 80 93 REAL(wp) :: ft2 = 1./18.9984 ! (Dickson & Riley 1979 ) 94 REAL(wp) :: kf0 = -12.641 95 REAL(wp) :: kf1 = 1590.2 96 REAL(wp) :: kf2 = 1.525 97 REAL(wp) :: kf3 = 1.0 98 REAL(wp) :: kf4 = -0.001005 99 100 REAL(wp) :: cb0 = -8966.90 ! Coeff. for 1. dissoc. of boric acid 101 REAL(wp) :: cb1 = -2890.53 ! (Dickson and Goyet, 1994) 102 REAL(wp) :: cb2 = -77.942 103 REAL(wp) :: cb3 = 1.728 104 REAL(wp) :: cb4 = -0.0996 105 REAL(wp) :: cb5 = 148.0248 106 REAL(wp) :: cb6 = 137.1942 107 REAL(wp) :: cb7 = 1.62142 108 REAL(wp) :: cb8 = -24.4344 109 REAL(wp) :: cb9 = -25.085 110 REAL(wp) :: cb10 = -0.2474 111 REAL(wp) :: cb11 = 0.053105 112 113 REAL(wp) :: cw0 = -13847.26 ! Coeff. for dissoc. of water (Dickson and Riley, 1979 ) 114 REAL(wp) :: cw1 = 148.9652 115 REAL(wp) :: cw2 = -23.6521 116 REAL(wp) :: cw3 = 118.67 117 REAL(wp) :: cw4 = -5.977 118 REAL(wp) :: cw5 = 1.0495 119 REAL(wp) :: cw6 = -0.01615 81 120 82 121 ! ! volumetric solubility constants for o2 in ml/L … … 161 200 DO ji = 1, jpi 162 201 ! ! SET ABSOLUTE TEMPERATURE 163 ztkel = tsn(ji,jj,1,jp_tem) + 273.1 5202 ztkel = tsn(ji,jj,1,jp_tem) + 273.16 164 203 zt = ztkel * 0.01 165 204 zt2 = zt * zt … … 170 209 ! ! AND FOR THE ATMOSPHERE FOR NON IDEAL GAS 171 210 zcek1 = ca0 + ca1 / zt + ca2 * zlogt + ca3 * zt2 + zsal * ( ca4 + ca5 * zt + ca6 * zt2 ) 211 ! ! LN(K0) OF SOLUBILITY OF O2 and N2 in ml/L (EQ. 8, GARCIA AND GORDON, 1992) 212 ztgg = LOG( ( 298.15 - tsn(ji,jj,1,jp_tem) ) / ztkel ) ! Set the GORDON & GARCIA scaled temperature 213 ztgg2 = ztgg * ztgg 214 ztgg3 = ztgg2 * ztgg 215 ztgg4 = ztgg3 * ztgg 216 ztgg5 = ztgg4 * ztgg 217 zoxy = ox0 + ox1 * ztgg + ox2 * ztgg2 + ox3 * ztgg3 + ox4 * ztgg4 + ox5 * ztgg5 & 218 + zsal * ( ox6 + ox7 * ztgg + ox8 * ztgg2 + ox9 * ztgg3 ) + ox10 * zsal2 219 172 220 ! ! SET SOLUBILITIES OF O2 AND CO2 173 chemc(ji,jj) = EXP( zcek1 ) * 1.e-6 * rhop(ji,jj,1) / 1000. ! mol/(L uatm) 221 chemc(ji,jj,1) = EXP( zcek1 ) * 1.e-6 * rhop(ji,jj,1) / 1000. ! mol/(L uatm) 222 chemc(ji,jj,2) = ( EXP( zoxy ) * o2atm ) * oxyco ! mol/(L atm) 174 223 ! 175 224 END DO … … 184 233 !CDIR NOVERRCHK 185 234 DO ji = 1, jpi 186 ztkel = tsn(ji,jj,jk,jp_tem) + 273.1 5235 ztkel = tsn(ji,jj,jk,jp_tem) + 273.16 187 236 zsal = tsn(ji,jj,jk,jp_sal) + ( 1.- tmask(ji,jj,jk) ) * 35. 188 237 zsal2 = zsal * zsal … … 214 263 215 264 ! SET ABSOLUTE TEMPERATURE 216 ztkel = tsn(ji,jj,jk,jp_tem) + 273.1 5265 ztkel = tsn(ji,jj,jk,jp_tem) + 273.16 217 266 zsal = tsn(ji,jj,jk,jp_sal) + ( 1.-tmask(ji,jj,jk) ) * 35. 218 267 zsqrt = SQRT( zsal ) … … 235 284 236 285 ! DISSOCIATION CONSTANT FOR SULFATES on free H scale (Dickson 1990) 237 zcks = EXP(-4276.1 * ztr + 141.328 - 23.093 * zlogt & 238 & + (-13856. * ztr + 324.57 - 47.986 * zlogt) * zisqrt & 239 & + (35474. * ztr - 771.54 + 114.723 * zlogt) * zis & 240 & - 2698. * ztr * zis**1.5 + 1776.* ztr * zis2 & 241 & + LOG(1.0 - 0.001005 * zsal)) 242 ! 243 aphscale(ji,jj,jk) = ( 1. + zst / zcks ) 286 zcks = EXP( ks1 * ztr + ks0 + ks2 * zlogt & 287 & + ( ks3 * ztr + ks4 + ks5 * zlogt ) * zisqrt & 288 & + ( ks6 * ztr + ks7 + ks8 * zlogt ) * zis & 289 & + ks9 * ztr * zis * zisqrt + ks10 * ztr *zis2 + LOG( ks11 + ks12 *zsal ) ) 244 290 245 291 ! DISSOCIATION CONSTANT FOR FLUORIDES on free H scale (Dickson and Riley 79) 246 zckf = EXP( 1590.2*ztr - 12.641 + 1.525*zisqrt & 247 & + LOG(1.0d0 - 0.001005d0*zsal) & 248 & + LOG(1.0d0 + zst/zcks)) 292 zckf = EXP( kf1 * ztr + kf0 + kf2 * zisqrt + LOG( kf3 + kf4 * zsal ) ) 249 293 250 294 ! DISSOCIATION CONSTANT FOR CARBONATE AND BORATE 251 zckb= (-8966.90 - 2890.53*zsqrt - 77.942*zsal & 252 & + 1.728*zsal15 - 0.0996*zsal*zsal)*ztr & 253 & + (148.0248 + 137.1942*zsqrt + 1.62142*zsal) & 254 & + (-24.4344 - 25.085*zsqrt - 0.2474*zsal) & 255 & * zlogt + 0.053105*zsqrt*ztkel 256 295 zckb = ( cb0 + cb1 * zsqrt + cb2 * zsal + cb3 * zsal15 + cb4 * zsal * zsal ) * ztr & 296 & + ( cb5 + cb6 * zsqrt + cb7 * zsal ) & 297 & + ( cb8 + cb9 * zsqrt + cb10 * zsal ) * zlogt + cb11 * zsqrt * ztkel & 298 & + LOG( ( 1.+ zst / zcks + zft / zckf ) / ( 1.+ zst / zcks ) ) 257 299 258 300 zck1 = c10 * ztr + c11 + c12 * zlogt + c13 * zsal + c14 * zsal * zsal … … 260 302 261 303 ! PKW (H2O) (DICKSON AND RILEY, 1979) 262 zckw = -13847.26*ztr + 148.9652 - 23.6521 * zlogt & 263 & + (118.67*ztr - 5.977 + 1.0495 * zlogt) & 264 & * zsqrt - 0.01615 * zsal 304 zckw = cw0 * ztr + cw1 + cw2 * zlogt + ( cw3 * ztr + cw4 + cw5 * zlogt ) * zsqrt + cw6 * zsal 305 265 306 266 307 ! APPARENT SOLUBILITY PRODUCT K'SP OF CALCITE IN SEAWATER … … 337 378 !! *** ROUTINE p4z_che_alloc *** 338 379 !!---------------------------------------------------------------------- 339 ALLOCATE( sio3eq(jpi,jpj,jpk), fekeq(jpi,jpj,jpk), chemc(jpi,jpj), chemo2(jpi,jpj,jpk), & 340 & STAT=p4z_che_alloc ) 380 ALLOCATE( sio3eq(jpi,jpj,jpk), fekeq(jpi,jpj,jpk), chemc(jpi,jpj,2), chemo2(jpi,jpj,jpk), STAT=p4z_che_alloc ) 341 381 ! 342 382 IF( p4z_che_alloc /= 0 ) CALL ctl_warn('p4z_che_alloc : failed to allocate arrays.') … … 356 396 357 397 !!====================================================================== 358 END MODULE p4zche398 END MODULE p4zche -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zflx.F90
r6371 r6372 84 84 ! 85 85 INTEGER :: ji, jj, jm, iind, iindm1 86 REAL(wp) :: ztc, ztc2, ztc3, z tc4, zws, zkgwan86 REAL(wp) :: ztc, ztc2, ztc3, zws, zkgwan 87 87 REAL(wp) :: zfld, zflu, zfld16, zflu16, zfact 88 88 REAL(wp) :: zph, zah2, zbot, zdic, zalk, zsch_o2, zalka, zsch_co2 … … 135 135 136 136 ! CALCULATE [ALK]([CO3--], [HCO3-]) 137 zalk = zalka - ( akw3(ji,jj,1) / zph - zph / aphscale(ji,jj,1) & 138 & + zbot / ( 1.+ zph / akb3(ji,jj,1) ) ) 137 zalk = zalka - ( akw3(ji,jj,1) / zph - zph + zbot / ( 1.+ zph / akb3(ji,jj,1) ) ) 139 138 140 139 ! CALCULATE [H+] AND [H2CO3] … … 163 162 ztc2 = ztc * ztc 164 163 ztc3 = ztc * ztc2 165 ztc4 = ztc2 * ztc2166 164 ! Compute the schmidt Number both O2 and CO2 167 zsch_co2 = 2 116.8 - 136.25 * ztc + 4.7353 * ztc2 - 0.092307 * ztc3 + 0.0007555 * ztc4168 zsch_o2 = 19 20.4 - 135.6 * ztc + 5.2122 * ztc2 - 0.109390 * ztc3 + 0.0009377 * ztc4165 zsch_co2 = 2073.1 - 125.62 * ztc + 3.6276 * ztc2 - 0.043126 * ztc3 166 zsch_o2 = 1953.4 - 128.0 * ztc + 3.9918 * ztc2 - 0.050091 * ztc3 169 167 ! wind speed 170 168 zws = wndm(ji,jj) * wndm(ji,jj) 171 169 ! Compute the piston velocity for O2 and CO2 172 zkgwan = 0. 251 * zws170 zkgwan = 0.3 * zws + 2.5 * ( 0.5246 + 0.016256 * ztc + 0.00049946 * ztc2 ) 173 171 zkgwan = zkgwan * xconv * ( 1.- fr_i(ji,jj) ) * tmask(ji,jj,1) 174 172 # if defined key_degrad … … 184 182 DO ji = 1, jpi 185 183 ! Compute CO2 flux for the sea and air 186 zfld = satmco2(ji,jj) * patm(ji,jj) * tmask(ji,jj,1) * chemc(ji,jj ) * zkgco2(ji,jj) ! (mol/L) * (m/s)184 zfld = satmco2(ji,jj) * patm(ji,jj) * tmask(ji,jj,1) * chemc(ji,jj,1) * zkgco2(ji,jj) ! (mol/L) * (m/s) 187 185 zflu = zh2co3(ji,jj) * tmask(ji,jj,1) * zkgco2(ji,jj) ! (mol/L) (m/s) ? 188 186 oce_co2(ji,jj) = ( zfld - zflu ) * rfact2 * e1e2t(ji,jj) * tmask(ji,jj,1) * 1000. … … 191 189 192 190 ! Compute O2 flux 193 zfld16 = patm(ji,jj) * chemo2(ji,jj,1) * tmask(ji,jj,1) * zkgo2(ji,jj) ! (mol/L) * (m/s)191 zfld16 = atcox * patm(ji,jj) * chemc(ji,jj,2) * tmask(ji,jj,1) * zkgo2(ji,jj) ! (mol/L) * (m/s) 194 192 zflu16 = trb(ji,jj,1,jpoxy) * tmask(ji,jj,1) * zkgo2(ji,jj) 195 193 zoflx(ji,jj) = zfld16 - zflu16 … … 224 222 ENDIF 225 223 IF( iom_use( "Dpco2" ) ) THEN 226 zw2d(:,:) = ( satmco2(:,:) * patm(:,:) - zh2co3(:,:) / ( chemc(:,: ) + rtrn ) ) * tmask(:,:,1)224 zw2d(:,:) = ( satmco2(:,:) * patm(:,:) - zh2co3(:,:) / ( chemc(:,:,1) + rtrn ) ) * tmask(:,:,1) 227 225 CALL iom_put( "Dpco2" , zw2d ) 228 226 ENDIF 229 227 IF( iom_use( "Dpo2" ) ) THEN 230 zw2d(:,:) = ( atcox * patm(:,:) - atcox * trn(:,:,1,jpoxy) / ( chemo2(:,:,1) + rtrn ) ) * tmask(:,:,1)228 zw2d(:,:) = ( atcox * patm(:,:) - trb(:,:,1,jpoxy) / ( chemc(:,:,2) + rtrn ) ) * tmask(:,:,1) 231 229 CALL iom_put( "Dpo2" , zw2d ) 232 230 ENDIF … … 240 238 trc2d(:,:,jp_pcs0_2d + 1) = zoflx(:,:) * 1000 * tmask(:,:,1) 241 239 trc2d(:,:,jp_pcs0_2d + 2) = zkgco2(:,:) * tmask(:,:,1) 242 trc2d(:,:,jp_pcs0_2d + 3) = ( satmco2(:,:) * patm(:,:) - zh2co3(:,:) / ( chemc(:,: ) + rtrn ) ) * tmask(:,:,1)240 trc2d(:,:,jp_pcs0_2d + 3) = ( satmco2(:,:) * patm(:,:) - zh2co3(:,:) / ( chemc(:,:,1) + rtrn ) ) * tmask(:,:,1) 243 241 ENDIF 244 242 ENDIF … … 402 400 403 401 !!====================================================================== 404 END MODULE p4zflx402 END MODULE p4zflx -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zint.F90
r6371 r6372 81 81 82 82 !!====================================================================== 83 END MODULE p4zint83 END MODULE p4zint -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlim.F90
r6371 r6372 265 265 266 266 !!====================================================================== 267 END MODULE p4zlim267 END MODULE p4zlim -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zlys.F90
r6371 r6372 91 91 zalka = trb(ji,jj,jk,jptal) / zfact 92 92 ! CALCULATE [ALK]([CO3--], [HCO3-]) 93 zalk = zalka - ( akw3(ji,jj,jk) / zph - zph / ( aphscale(ji,jj,jk) + rtrn ) & 94 & + borat(ji,jj,jk) / ( 1. + zph / akb3(ji,jj,jk) ) ) 93 zalk = zalka - ( akw3(ji,jj,jk) / zph - zph + borat(ji,jj,jk) / ( 1. + zph / akb3(ji,jj,jk) ) ) 95 94 ! CALCULATE [H+] and [CO3--] 96 95 zaldi = zdic - zalk … … 153 152 IF( iom_use( "DCAL" ) ) CALL iom_put( "DCAL" , zcaldiss(:,:,:) * 1.e+3 * rfact2r * tmask(:,:,:) ) 154 153 ELSE 155 IF( ln_diatrc ) THEN 156 trc3d(:,:,:,jp_pcs0_3d ) = -1. * LOG10( hi(:,:,:) ) * tmask(:,:,:) 157 trc3d(:,:,:,jp_pcs0_3d + 1) = zco3(:,:,:) * tmask(:,:,:) 158 trc3d(:,:,:,jp_pcs0_3d + 2) = aksp(:,:,:) / calcon * tmask(:,:,:) 159 ENDIF 154 trc3d(:,:,:,jp_pcs0_3d ) = -1. * LOG10( hi(:,:,:) ) * tmask(:,:,:) 155 trc3d(:,:,:,jp_pcs0_3d + 1) = zco3(:,:,:) * tmask(:,:,:) 156 trc3d(:,:,:,jp_pcs0_3d + 2) = aksp(:,:,:) / calcon * tmask(:,:,:) 160 157 ENDIF 161 158 ! … … 226 223 #endif 227 224 !!====================================================================== 228 END MODULE p4zlys225 END MODULE p4zlys -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmeso.F90
r6371 r6372 340 340 341 341 !!====================================================================== 342 END MODULE p4zmeso342 END MODULE p4zmeso -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmicro.F90
r6371 r6372 273 273 274 274 !!====================================================================== 275 END MODULE p4zmicro275 END MODULE p4zmicro -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zmort.F90
r6371 r6372 277 277 278 278 !!====================================================================== 279 END MODULE p4zmort279 END MODULE p4zmort -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zopt.F90
r6371 r6372 439 439 440 440 !!====================================================================== 441 END MODULE p4zopt441 END MODULE p4zopt -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zprod.F90
r6371 r6372 629 629 630 630 !!====================================================================== 631 END MODULE p4zprod631 END MODULE p4zprod -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsbc.F90
r6371 r6372 519 519 520 520 !!====================================================================== 521 END MODULE p4zsbc521 END MODULE p4zsbc -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsed.F90
r6371 r6372 72 72 CHARACTER (len=25) :: charout 73 73 REAL(wp), POINTER, DIMENSION(:,: ) :: zpdep, zsidep, zwork1, zwork2, zwork3 74 REAL(wp), POINTER, DIMENSION(:,:) :: zsedcal, zsedsi, zsedc75 74 REAL(wp), POINTER, DIMENSION(:,: ) :: zdenit2d, zironice, zbureff 76 75 REAL(wp), POINTER, DIMENSION(:,: ) :: zwsbio3, zwsbio4, zwscal … … 84 83 ! Allocate temporary workspace 85 84 CALL wrk_alloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) 86 CALL wrk_alloc( jpi, jpj, zsedcal, zsedsi, zsedc )87 85 CALL wrk_alloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) 88 86 CALL wrk_alloc( jpi, jpj, jpk, zsoufer ) … … 93 91 zwork2 (:,:) = 0.e0 94 92 zwork3 (:,:) = 0.e0 95 zsedsi (:,:) = 0.e096 zsedcal (:,:) = 0.e097 zsedc (:,:) = 0.e098 93 99 94 ! Iron input/uptake due to sea ice : Crude parameterization based on Lancelot et al. … … 303 298 tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + zcaloss * zrivalk * 2.0 304 299 tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zcaloss * zrivalk 305 zsedcal(ji,jj) = (1.0 - zrivalk) * zcaloss / zdep306 zsedsi (ji,jj) = (1.0 - zrivsil) * zsiloss / zdep307 300 #endif 308 301 END DO … … 343 336 tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + rno3 * (zolimit + (1.+rdenit) * (zpdenit + zdenitt) ) 344 337 tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zpdenit + zolimit + zdenitt 345 sdenit(ji,jj) = rdenit * zpdenit / zdep 346 zsedc(ji,jj) = (1. - zrivno3) * zwstpoc / zdep 338 sdenit(ji,jj) = rdenit * zpdenit * fse3t(ji,jj,ikt) 347 339 #endif 348 340 END DO … … 400 392 CALL iom_put( "INTNFIX" , zwork1 ) 401 393 ENDIF 402 IF( iom_use("SedCal" ) ) CALL iom_put( "SedCal", zsedcal(:,:) * 1.e+3 )403 IF( iom_use("SedSi" ) ) CALL iom_put( "SedSi", zsedsi (:,:) * 1.e+3 )404 IF( iom_use("SedC" ) ) CALL iom_put( "SedC", zsedc (:,:) * 1.e+3 )405 IF( iom_use("Sdenit" ) ) CALL iom_put( "Sdenit", sdenit (:,:) * 1.e+3 * rno3 )406 394 ENDIF 407 395 ELSE … … 417 405 ! 418 406 CALL wrk_dealloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) 419 CALL wrk_dealloc( jpi, jpj, zsedcal , zsedsi, zsedc )420 407 CALL wrk_dealloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) 421 408 CALL wrk_dealloc( jpi, jpj, jpk, zsoufer ) … … 449 436 450 437 !!====================================================================== 451 END MODULE p4zsed438 END MODULE p4zsed -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsink.F90
r6371 r6372 913 913 914 914 !!====================================================================== 915 END MODULE p4zsink915 END MODULE p4zsink -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/P4Z/p4zsms.F90
r6371 r6372 38 38 39 39 REAL(wp) :: alkbudget, no3budget, silbudget, ferbudget, po4budget 40 REAL(wp) :: xfact1, xfact2 , xfact340 REAL(wp) :: xfact1, xfact2 41 41 INTEGER :: numco2, numnut, numnit !: logical unit for co2 budget 42 42 … … 474 474 !!--------------------------------------------------------------------- 475 475 ! 476 INTEGER, INTENT( in ) :: kt ! ocean time-step index 477 REAL(wp) :: zrdenittot, zsdenittot, znitrpottot 476 INTEGER , INTENT( in ) :: kt ! ocean time-step index 477 REAL(wp) :: zfact 478 REAL(wp) :: zrdenittot, zsdenittot, znitrpottot 478 479 CHARACTER(LEN=100) :: cltxt 479 480 REAL(wp), DIMENSION(jpi,jpj,jpk) :: zvol … … 491 492 xfact1 = rfact2r * 12. / 1.e15 * ryyss ! conversion molC/kt --> PgC/yr 492 493 xfact2 = 1.e+3 * rno3 * 14. / 1.e12 * ryyss ! conversion molC/l/s ----> TgN/m3/yr 493 xfact3 = 1.e+3 * rfact2r * rno3 ! conversion molC/l/kt ----> molN/m3/s494 494 cltxt='time-step Alkalinity Nitrate Phosphorus Silicate Iron' 495 495 IF( lwp ) WRITE(numnut,*) TRIM(cltxt) … … 574 574 IF( iom_use( "Sdenit" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN 575 575 zsdenittot = glob_sum ( sdenit(:,:) * e1e2t(:,:) ) 576 CALL iom_put( "Sdenit", sdenit(:,:) * xfact3* tmask(:,:,1) ) ! Nitrate reduction in the sediments576 CALL iom_put( "Sdenit", sdenit(:,:) * zfact * tmask(:,:,1) ) ! Nitrate reduction in the sediments 577 577 ENDIF 578 578 -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/sms_pisces.F90
r6371 r6372 101 101 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: hi !: ??? 102 102 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: excess !: ??? 103 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aphscale !:104 105 103 106 104 !!* Temperature dependancy of SMS terms … … 156 154 & ak23(jpi,jpj,jpk) , aksp (jpi,jpj,jpk) , & 157 155 & akw3(jpi,jpj,jpk) , borat (jpi,jpj,jpk) , & 158 & hi (jpi,jpj,jpk) , excess(jpi,jpj,jpk) , & 159 & aphscale(jpi,jpj,jpk), STAT=ierr(4) ) 156 & hi (jpi,jpj,jpk) , excess(jpi,jpj,jpk) , STAT=ierr(4) ) 160 157 ! 161 158 !* Temperature dependancy of SMS terms -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/PISCES/trcini_pisces.F90
r6371 r6372 115 115 po4r = 1._wp / 122._wp 116 116 o2nit = 32._wp / 122._wp 117 rdenit = 105._wp / 16._wp 118 rdenita = 3._wp / 5._wp 117 119 o2ut = 133._wp / 122._wp 118 rdenit = ( ( o2ut + o2nit ) * 0.80 - rno3 - rno3 * 0.60 ) / rno3119 rdenita = 3._wp / 5._wp120 121 120 122 121 ! Initialization of tracer concentration in case of no restart -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trcdmp.F90
r6371 r6372 107 107 108 108 jl = n_trc_index(jn) 109 CALL trc_dta( kt, sf_trcdta(jl) ) ! read tracer data at nit000110 ztrcdta(:,:,:) = sf_trcdta(jl)%fnow(:,:,:) * tmask(:,:,:) * rf_trfac(jl)109 CALL trc_dta( kt, sf_trcdta(jl),rf_trfac(jl) ) ! read tracer data at nit000 110 ztrcdta(:,:,:) = sf_trcdta(jl)%fnow(:,:,:) 111 111 112 112 SELECT CASE ( nn_zdmp_tr ) … … 187 187 INTEGER :: ji , jj, jk, jn, jl, jc ! dummy loop indicesa 188 188 INTEGER :: isrow ! local index 189 REAL(wp), POINTER, DIMENSION(:,:,:) :: ztrcdta ! 3D workspace 189 190 190 191 !!---------------------------------------------------------------------- … … 277 278 IF(lwp) WRITE(numout,*) 278 279 ! 280 CALL wrk_alloc( jpi, jpj, jpk, ztrcdta ) ! Memory allocation 281 ! 279 282 DO jn = 1, jptra 280 283 IF( ln_trc_ini(jn) ) THEN ! update passive tracers arrays with input data read from file 281 284 jl = n_trc_index(jn) 282 CALL trc_dta( kt, sf_trcdta(jl) ) ! read tracer data at nit000 285 CALL trc_dta( kt, sf_trcdta(jl),rf_trfac(jl) ) ! read tracer data at nit000 286 ztrcdta(:,:,:) = sf_trcdta(jl)%fnow(:,:,:) 283 287 DO jc = 1, npncts 284 288 DO jk = 1, jpkm1 285 289 DO jj = nctsj1(jc), nctsj2(jc) 286 290 DO ji = nctsi1(jc), nctsi2(jc) 287 trn(ji,jj,jk,jn) = sf_trcdta(jl)%fnow(ji,jj,jk) * tmask(ji,jj,jk) * rf_trfac(jl)291 trn(ji,jj,jk,jn) = ztrcdta(ji,jj,jk) * tmask(ji,jj,jk) 288 292 trb(ji,jj,jk,jn) = trn(ji,jj,jk,jn) 289 293 ENDDO … … 293 297 ENDIF 294 298 ENDDO 295 !299 CALL wrk_dealloc( jpi, jpj, jpk, ztrcdta ) 296 300 ENDIF 297 301 ! -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trcldf.F90
r6371 r6372 56 56 INTEGER, INTENT( in ) :: kt ! ocean time-step index 57 57 !! 58 INTEGER :: ji, jj, jk, jn 59 REAL(wp) :: zdep 58 INTEGER :: jn 60 59 CHARACTER (len=22) :: charout 61 60 REAL(wp), POINTER, DIMENSION(:,:,:,:) :: ztrtrd … … 67 66 68 67 rldf = rldf_rat 69 ! 70 r_fact_lap(:,:,:) = 1. 71 DO jk= 1, jpk 72 DO jj = 1, jpj 73 DO ji = 1, jpi 74 IF( fsdept(ji,jj,jk) > 200. .AND. gphit(ji,jj) < 5. .AND. gphit(ji,jj) > -5. ) THEN 75 zdep = MAX( fsdept(ji,jj,jk) - 1000., 0. ) / 1000. 76 r_fact_lap(ji,jj,jk) = MAX( 1., rn_fact_lap * EXP( -zdep ) ) 77 ENDIF 78 END DO 79 END DO 80 END DO 81 ! 68 82 69 IF( l_trdtrc ) THEN 83 70 CALL wrk_alloc( jpi, jpj, jpk, jptra, ztrtrd ) -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trcnam_trp.F90
r6371 r6372 40 40 REAL(wp), PUBLIC :: rn_ahtrc_0 !: diffusivity coefficient for passive tracer (m2/s) 41 41 REAL(wp), PUBLIC :: rn_ahtrb_0 !: background diffusivity coefficient for passive tracer (m2/s) 42 REAL(wp), PUBLIC :: rn_fact_lap !: Enhanced zonal diffusivity coefficent in the equatorial domain43 42 44 43 ! !!: ** Treatment of Negative concentrations ( nam_trcrad ) … … 75 74 NAMELIST/namtrc_ldf/ ln_trcldf_lap , & 76 75 & ln_trcldf_bilap, ln_trcldf_level, & 77 & ln_trcldf_hor , ln_trcldf_iso , rn_ahtrc_0, rn_ahtrb_0, & 78 & rn_fact_lap 79 76 & ln_trcldf_hor , ln_trcldf_iso , rn_ahtrc_0, rn_ahtrb_0 80 77 NAMELIST/namtrc_zdf/ ln_trczdf_exp , nn_trczdf_exp 81 78 NAMELIST/namtrc_rad/ ln_trcrad … … 130 127 WRITE(numout,*) ' diffusivity coefficient rn_ahtrc_0 = ', rn_ahtrc_0 131 128 WRITE(numout,*) ' background hor. diffusivity rn_ahtrb_0 = ', rn_ahtrb_0 132 WRITE(numout,*) ' enhanced zonal diffusivity rn_fact_lap = ', rn_fact_lap133 129 ENDIF 134 130 -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trcnxt.F90
r6371 r6372 102 102 ENDIF 103 103 104 #if defined key_agrif105 CALL Agrif_trc ! AGRIF zoom boundaries106 #endif107 104 ! Update after tracer on domain lateral boundaries 108 105 DO jn = 1, jptra … … 113 110 #if defined key_bdy 114 111 !! CALL bdy_trc( kt ) ! BDY open boundaries 112 #endif 113 #if defined key_agrif 114 CALL Agrif_trc ! AGRIF zoom boundaries 115 115 #endif 116 116 -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trcsbc.F90
r6371 r6372 170 170 END DO 171 171 ENDIF 172 !173 CALL lbc_lnk( sbc_trc(:,:,jn), 'T', 1. )174 172 ! Concentration dilution effect on tracers due to evaporation & precipitation 175 173 DO jj = 2, jpj -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/TRP/trctrp.F90
r6371 r6372 67 67 IF( lk_trabbl ) CALL trc_bbl( kstp ) ! advective (and/or diffusive) bottom boundary layer scheme 68 68 IF( ln_trcdmp ) CALL trc_dmp( kstp ) ! internal damping trends 69 IF( ln_trcdmp_clo ) CALL trc_dmp_clo( kstp ) ! internal damping trends on closed seas only 69 70 CALL trc_adv( kstp ) ! horizontal & vertical advection 70 71 CALL trc_ldf( kstp ) ! lateral mixing … … 77 78 CALL trc_nxt( kstp ) ! tracer fields at next time step 78 79 IF( ln_trcrad ) CALL trc_rad( kstp ) ! Correct artificial negative concentrations 79 IF( ln_trcdmp_clo ) CALL trc_dmp_clo( kstp ) ! internal damping trends on closed seas only80 80 81 81 #if defined key_agrif -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/oce_trc.F90
r6371 r6372 116 116 USE ldftra_oce , ONLY : aeiw => aeiw !: eddy induced velocity coef. at w-points (m2/s) 117 117 USE ldftra_oce , ONLY : lk_traldf_eiv => lk_traldf_eiv !: eddy induced velocity flag 118 USE ldftra_oce , ONLY : r_fact_lap => r_fact_lap !: enhanced zonal diffusivity coefficient119 118 120 119 !* vertical diffusion * -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/trcdta.F90
r6371 r6372 151 151 152 152 153 SUBROUTINE trc_dta( kt, sf_dta )153 SUBROUTINE trc_dta( kt, sf_dta, zrf_trfac ) 154 154 !!---------------------------------------------------------------------- 155 155 !! *** ROUTINE trc_dta *** … … 165 165 INTEGER , INTENT(in ) :: kt ! ocean time-step 166 166 TYPE(FLD), DIMENSION(1) , INTENT(inout) :: sf_dta ! array of information on the field to read 167 REAL(wp) , INTENT(in ) :: zrf_trfac ! multiplication factor 167 168 ! 168 169 INTEGER :: ji, jj, jk, jl, jkk, ik ! dummy loop indices … … 233 234 ENDIF 234 235 ! 236 sf_dta(1)%fnow(:,:,:) = sf_dta(1)%fnow(:,:,:) * zrf_trfac ! multiplicative factor 237 ! 235 238 IF( lwp .AND. kt == nit000 ) THEN 236 239 clndta = TRIM( sf_dta(1)%clvar ) -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/trcini.F90
r6371 r6372 61 61 INTEGER :: jk, jn, jl ! dummy loop indices 62 62 CHARACTER (len=25) :: charout 63 REAL(wp), POINTER, DIMENSION(:,:,:) :: ztrcdta ! 4D workspace 63 64 !!--------------------------------------------------------------------- 64 65 ! … … 120 121 IF( ln_trcdta .AND. nb_trcdta > 0 ) THEN ! Initialisation of tracer from a file that may also be used for damping 121 122 ! 123 CALL wrk_alloc( jpi, jpj, jpk, ztrcdta ) ! Memory allocation 124 ! 122 125 DO jn = 1, jptra 123 126 IF( ln_trc_ini(jn) ) THEN ! update passive tracers arrays with input data read from file 124 127 jl = n_trc_index(jn) 125 CALL trc_dta( nit000, sf_trcdta(jl) ) ! read tracer data at nit000126 trn(:,:,:,jn) = sf_trcdta(jl)%fnow(:,:,:) * tmask(:,:,:) * rf_trfac(jl)127 !128 CALL trc_dta( nit000, sf_trcdta(jl),rf_trfac(jl) ) ! read tracer data at nit000 129 ztrcdta(:,:,:) = sf_trcdta(jl)%fnow(:,:,:) 130 trn(:,:,:,jn) = ztrcdta(:,:,:) * tmask(:,:,:) 128 131 IF( .NOT.ln_trcdmp .AND. .NOT.ln_trcdmp_clo ) THEN !== deallocate data structure ==! 129 132 ! (data used only for initialisation) … … 135 138 ENDIF 136 139 ENDDO 137 !140 CALL wrk_dealloc( jpi, jpj, jpk, ztrcdta ) 138 141 ENDIF 139 142 ! -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/trcnam.F90
r6371 r6372 397 397 !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) 398 398 !!====================================================================== 399 END MODULE trcnam399 END MODULE trcnam -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/trcsms.F90
r6371 r6372 75 75 76 76 !!====================================================================== 77 END MODULE trcsms77 END MODULE trcsms -
branches/UKMO/dev_r5518_debug_isf_restart/NEMOGCM/NEMO/TOP_SRC/trcstp.F90
r6371 r6372 32 32 REAL(wp), DIMENSION(:,:,:), SAVE, ALLOCATABLE :: qsr_arr ! save qsr during TOP time-step 33 33 REAL(wp) :: rdt_sampl 34 INTEGER :: nb_rec_per_day 34 INTEGER :: nb_rec_per_days 35 35 INTEGER :: isecfst, iseclast 36 36 LOGICAL :: llnew … … 123 123 !! of diurnal cycle 124 124 !! 125 !! ** Method : store in TOP the qsr every hour ( or every time-step ifthe latter125 !! ** Method : store in TOP the qsr every hour ( or every time-step the latter 126 126 !! is greater than 1 hour ) and then, compute the mean with 127 127 !! a moving average over 24 hours. … … 134 134 IF( ln_cpl ) THEN 135 135 rdt_sampl = 86400. / ncpl_qsr_freq 136 nb_rec_per_day = ncpl_qsr_freq136 nb_rec_per_days = ncpl_qsr_freq 137 137 ELSE 138 138 rdt_sampl = MAX( 3600., rdt * nn_dttrc ) 139 nb_rec_per_day = INT( 86400 / rdt_sampl )139 nb_rec_per_days = INT( 86400 / rdt_sampl ) 140 140 ENDIF 141 141 ! 142 142 IF( lwp ) THEN 143 143 WRITE(numout,*) 144 WRITE(numout,*) ' Sampling frequency dt = ', rdt_sampl, 's',' Number of sampling per day nrec = ', nb_rec_per_day 144 WRITE(numout,*) ' Sampling frequency dt = ', rdt_sampl, 's',' Number of sampling per day nrec = ', nb_rec_per_days 145 145 WRITE(numout,*) 146 146 ENDIF 147 147 ! 148 ! !* Restart: read in restart file 149 IF( ln_rsttr .AND. iom_varid( numrtr, 'qsr_mean', ldstop = .FALSE. ) > 0 ) THEN 150 IF(lwp) WRITE(numout,*) 'trc_qsr_mean: qsr_mean read in the restart file' 151 CALL iom_get( numrtr, jpdom_autoglo, 'qsr_mean', qsr_mean ) ! A mean of qsr 152 ELSE !* no restart: set from nit000 values 153 IF(lwp) WRITE(numout,*) 'trc_qsr_mean: qsr_mean set to nit000 values' 154 qsr_mean(:,:) = qsr(:,:) 155 ENDIF 156 ! 157 ALLOCATE( qsr_arr(jpi,jpj,nb_rec_per_day ) ) 158 DO jn = 1, nb_rec_per_day 159 qsr_arr(:,:,jn) = qsr_mean(:,:) 148 ALLOCATE( qsr_arr(jpi,jpj,nb_rec_per_days ) ) 149 DO jn = 1, nb_rec_per_days 150 qsr_arr(:,:,jn) = qsr(:,:) 160 151 ENDDO 152 qsr_mean(:,:) = qsr(:,:) 161 153 ! 162 154 isecfst = nsec_year + nsec1jan000 ! number of seconds between Jan. 1st 00h of nit000 year and the middle of time step … … 171 163 & ' time = ', (iseclast+rdt*nn_dttrc/2.)/3600.,'hours ' 172 164 isecfst = iseclast 173 DO jn = 1, nb_rec_per_day - 1165 DO jn = 1, nb_rec_per_days - 1 174 166 qsr_arr(:,:,jn) = qsr_arr(:,:,jn+1) 175 167 ENDDO 176 qsr_arr (:,:,nb_rec_per_day ) = qsr(:,:)177 qsr_mean(:,: ) = SUM( qsr_arr(:,:,:), 3 ) / nb_rec_per_day 168 qsr_arr (:,:,nb_rec_per_days) = qsr(:,:) 169 qsr_mean(:,: ) = SUM( qsr_arr(:,:,:), 3 ) / nb_rec_per_days 178 170 ENDIF 179 171 ! 180 IF( lrst_trc ) THEN !* Write the mean of qsr in restart file181 IF(lwp) WRITE(numout,*)182 IF(lwp) WRITE(numout,*) 'trc_mean_qsr : write qsr_mean in restart file kt =', kt183 IF(lwp) WRITE(numout,*) '~~~~~~~'184 CALL iom_rstput( kt, nitrst, numrtw, 'qsr_mean', qsr_mean(:,:) )185 ENDIF186 !187 172 END SUBROUTINE trc_mean_qsr 188 173
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