Changeset 7567 for branches/UKMO/CO6_shelfclimate/NEMOGCM/NEMO/OPA_SRC/IOM
- Timestamp:
- 2017-01-16T20:11:00+01:00 (8 years ago)
- Location:
- branches/UKMO/CO6_shelfclimate/NEMOGCM/NEMO/OPA_SRC/IOM
- Files:
-
- 3 edited
-
in_out_manager.F90 (modified) (5 diffs)
-
iom.F90 (modified) (5 diffs)
-
restart.F90 (modified) (3 diffs)
Legend:
- Unmodified
- Added
- Removed
-
branches/UKMO/CO6_shelfclimate/NEMOGCM/NEMO/OPA_SRC/IOM/in_out_manager.F90
r7566 r7567 30 30 CHARACTER(lc) :: cn_ocerst_outdir !: restart output directory 31 31 LOGICAL :: ln_rstart !: start from (F) rest or (T) a restart file 32 LOGICAL :: ln_rstdate !: datestamping of restarts 32 33 LOGICAL :: ln_rst_list !: output restarts at list of times (T) or by frequency (F) 33 34 INTEGER :: nn_no !: job number … … 41 42 INTEGER :: nn_write !: model standard output frequency 42 43 INTEGER :: nn_stock !: restart file frequency 43 INTEGER, DIMENSION(10 ) :: nn_stocklist !: restart dump times44 INTEGER, DIMENSION(100) :: nn_stocklist !: restart dump times 44 45 LOGICAL :: ln_dimgnnn !: type of dimgout. (F): 1 file for all proc 45 46 !: (T): 1 file per proc … … 47 48 LOGICAL :: ln_cfmeta !: output additional data to netCDF files required for compliance with the CF metadata standard 48 49 LOGICAL :: ln_clobber !: clobber (overwrite) an existing file 50 !JT 51 LOGICAL :: ln_NOOS !: NOOS transects diagnostics 52 !JT 49 53 INTEGER :: nn_chunksz !: chunksize (bytes) for NetCDF file (works only with iom_nf90 routines) 50 54 #if defined key_netcdf4 … … 83 87 INTEGER :: nwrite !: model standard output frequency 84 88 INTEGER :: nstock !: restart file frequency 85 INTEGER, DIMENSION(10 ) :: nstocklist !: restart dump times89 INTEGER, DIMENSION(100) :: nstocklist !: restart dump times 86 90 87 91 !!---------------------------------------------------------------------- … … 131 135 INTEGER :: numdct_in = -1 !: logical unit for transports computing 132 136 INTEGER :: numdct_vol = -1 !: logical unit for voulume transports output 133 INTEGER :: numdct_heat = -1 !: logical unit for heat transports output 134 INTEGER :: numdct_salt = -1 !: logical unit for salt transports output 137 !JT INTEGER :: numdct_heat = -1 !: logical unit for heat transports output 138 !JT INTEGER :: numdct_salt = -1 !: logical unit for salt transports output 139 !JT 140 INTEGER :: numdct_temp = -1 !: logical unit for heat transports output 141 INTEGER :: numdct_sal = -1 !: logical unit for salt transports output 142 143 INTEGER :: numdct_NOOS = -1 !: logical unit for NOOS transports output 144 INTEGER :: numdct_NOOS_h = -1 !: logical unit for NOOS hourly transports output 145 !JT 135 146 INTEGER :: numfl = -1 !: logical unit for floats ascii output 136 147 INTEGER :: numflo = -1 !: logical unit for floats ascii output -
branches/UKMO/CO6_shelfclimate/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90
r7566 r7567 44 44 USE ioipsl, ONLY : ju2ymds ! for calendar 45 45 USE crs ! Grid coarsening 46 46 47 47 IMPLICIT NONE 48 48 PUBLIC ! must be public to be able to access iom_def through iom … … 55 55 PUBLIC iom_init, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_gettime, iom_rstput, iom_put 56 56 PUBLIC iom_getatt, iom_use, iom_context_finalize 57 57 58 59 !JT REGION MEANS 60 !INTEGER , PUBLIC :: n_regions_output = 100 61 62 INTEGER , PUBLIC :: n_regions_output 63 !JT REGION MEANS 64 58 65 PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d 59 66 PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d … … 106 113 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_bnds 107 114 !!---------------------------------------------------------------------- 115 116 117 118 !JT REGION MEANS 119 !! read namelist to see if the region mask code is called, if so read the region mask, and count the regions. 120 121 122 REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: tmpregion !: temporary region_mask 123 INTEGER, DIMENSION(3) :: zdimsz ! number of elements in each of the 3 dimensions (i.e., lon, lat, no of masks, 297, 375, 4) for an array 124 INTEGER :: zndims ! number of dimensions in an array (i.e. 3, ) 125 INTEGER :: inum, nmasks,ierr,maskno,idmaskvar,tmpint 126 REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: tmp_region_mask_real ! tempory region_mask of reals 127 128 LOGICAL :: ln_diaregmean ! region mean calculation 129 130 131 INTEGER :: ios ! Local integer output status for namelist read 132 LOGICAL :: ln_diaregmean_ascii ! region mean calculation ascii output 133 LOGICAL :: ln_diaregmean_bin ! region mean calculation binary output 134 LOGICAL :: ln_diaregmean_nc ! region mean calculation netcdf output 135 136 137 138 NAMELIST/nam_diaregmean/ ln_diaregmean,ln_diaregmean_ascii,ln_diaregmean_bin,ln_diaregmean_nc 139 140 ! read in Namelist. 141 !!---------------------------------------------------------------------- 142 ! 143 REWIND ( numnam_ref ) ! Read Namelist nam_diatmb in referdiatmbence namelist : TMB diagnostics 144 READ ( numnam_ref, nam_diaregmean, IOSTAT=ios, ERR= 901 ) 145 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaregmean in reference namelist', lwp ) 146 147 REWIND( numnam_cfg ) ! Namelist nam_diatmb in configuration namelist TMB diagnostics 148 READ ( numnam_cfg, nam_diaregmean, IOSTAT = ios, ERR = 902 ) 149 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nam_diaregmean in configuration namelist', lwp ) 150 IF(lwm) WRITE ( numond, nam_diaregmean ) 151 152 IF (ln_diaregmean) THEN 153 154 ! Open region mask for region means, and retrieve the size of the mask (number of levels) 155 CALL iom_open ( 'region_mask.nc', inum ) 156 idmaskvar = iom_varid( inum, 'mask', kdimsz=zdimsz, kndims=zndims, ldstop = .FALSE.) 157 nmasks = zdimsz(3) 158 159 ! read in the region mask (which contains floating point numbers) into a temporary array of reals. 160 ALLOCATE( tmp_region_mask_real(jpi,jpj,nmasks), STAT= ierr ) 161 IF( ierr /= 0 ) CALL ctl_stop( 'dia_regmean_init: failed to allocate tmp_region_mask_real array' ) 162 163 ! Use jpdom_unknown to read in a n layer mask. 164 tmp_region_mask_real(:,:,:) = 0 165 CALL iom_get( inum, jpdom_unknown, 'mask', tmp_region_mask_real(1:nlci,1:nlcj,1:nmasks), & 166 & kstart = (/ mig(1),mjg(1),1 /), kcount = (/ nlci,nlcj,nmasks /) ) 167 168 CALL iom_close( inum ) 169 !Convert the region mask of reals into one of integers. 170 171 172 n_regions_output = 0 173 DO maskno = 1,nmasks 174 tmpint = maxval(int(tmp_region_mask_real(:,:,maskno))) 175 CALL mpp_max( tmpint ) 176 n_regions_output = n_regions_output + (tmpint + 1) 177 END DO 178 179 180 181 WRITE(numout,*) 'IOM: n_regions_output: ',n_regions_output 182 183 ELSE 184 n_regions_output = 1 185 ENDIF 186 187 188 189 !JT REGION MEANS 190 191 192 193 108 194 #if ! defined key_xios2 109 195 ALLOCATE( z_bnds(jpk,2) ) … … 227 313 CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) 228 314 CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) 315 316 317 318 ! JT Region means. 319 CALL iom_set_axis_attr( "region", (/ (REAL(ji,wp), ji=1,n_regions_output) /) ) 320 321 !CALL iom_set_axis_attr( "region", (/ (REAL(ji,wp), ji=1,100) /) ) 322 229 323 230 324 ! automatic definitions of some of the xml attributs … … 1246 1340 REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis 1247 1341 REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds 1342 1343 !INTEGER :: iind_JT 1344 1345 1346 !write(numout,*) 'IOM/iom.F90:iom_set_axis_attr: ',cdid 1347 1248 1348 IF ( PRESENT(paxis) ) THEN 1349 1350 !write(numout,*) 'IOM/iom.F90:iom_set_axis_attr paxis size for: ',cdid,SIZE(paxis) 1351 !write(numout,*) 'IOM/iom.F90:iom_set_axis_attr paxis values for: ',cdid,paxis 1352 !do iind_JT = 1,SIZE(paxis) 1353 ! write(numout,*) 'IOM/iom.F90:iom_set_axis_attr paxis individual values for: ',cdid,iind_JT,paxis(iind_JT) 1354 !end do 1355 1249 1356 #if ! defined key_xios2 1250 1357 IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, size=SIZE(paxis), value=paxis ) -
branches/UKMO/CO6_shelfclimate/NEMOGCM/NEMO/OPA_SRC/IOM/restart.F90
r7566 r7567 21 21 USE in_out_manager ! I/O manager 22 22 USE iom ! I/O module 23 USE ioipsl, ONLY : ju2ymds ! for calendar 23 24 USE eosbn2 ! equation of state (eos bn2 routine) 24 25 USE trdmxl_oce ! ocean active mixed layer tracers trends variables … … 54 55 !!---------------------------------------------------------------------- 55 56 INTEGER, INTENT(in) :: kt ! ocean time-step 57 INTEGER :: iyear, imonth, iday 58 REAL (wp) :: zsec 59 REAL (wp) :: zfjulday 56 60 !! 57 61 CHARACTER(LEN=20) :: clkt ! ocean time-step deine as a character 58 62 CHARACTER(LEN=50) :: clname ! ocean output restart file name 59 CHARACTER( lc):: clpath ! full path to ocean output restart file63 CHARACTER(LEN=150) :: clpath ! full path to ocean output restart file 60 64 !!---------------------------------------------------------------------- 61 65 ! … … 81 85 IF( kt == nitrst - 1 .OR. nstock == 1 .OR. ( kt == nitend .AND. .NOT. lrst_oce ) ) THEN 82 86 IF( nitrst <= nitend .AND. nitrst > 0 ) THEN 83 ! beware of the format used to write kt (default is i8.8, that should be large enough...) 84 IF( nitrst > 999999999 ) THEN ; WRITE(clkt, * ) nitrst 85 ELSE ; WRITE(clkt, '(i8.8)') nitrst 87 IF ( ln_rstdate ) THEN 88 zfjulday = fjulday + rdttra(1) / rday 89 IF( ABS(zfjulday - REAL(NINT(zfjulday),wp)) < 0.1 / rday ) zfjulday = REAL(NINT(zfjulday),wp) ! avoid truncation error 90 CALL ju2ymds( zfjulday, iyear, imonth, iday, zsec ) 91 WRITE(clkt, '(i4.4,2i2.2)') iyear, imonth, iday 92 IF ( ln_rst_list .AND. ( kt .NE. nitend) ) THEN 93 ! JT IF ( nstock_list_in_use_JT .AND. ( kt .NE. nitend - 1) ) THEN 94 WRITE(clkt, '(i4.4,2i2.2,a1,i10.10)') iyear, imonth, iday,'_',kt !JT 95 ENDIF 96 ELSE 97 ! beware of the format used to write kt (default is i8.8, that should be large enough...) 98 IF( nitrst > 999999999 ) THEN ; WRITE(clkt, * ) nitrst 99 ELSE ; WRITE(clkt, '(i8.8)') nitrst 100 ENDIF 86 101 ENDIF 87 102 ! create the file
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