Changeset 9394 for branches/2017/dev_merge_2017/DOC/tex_main
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- 2018-03-13T21:21:44+01:00 (6 years ago)
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branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.bib
r9388 r9394 100 100 @STRING{Tellus = {Tellus}} 101 101 102 %% No dash for repeated names 103 @IEEEtranBSTCTL{IEEEexample:BSTcontrol, 104 CTLdash_repeated_names = "no" 105 } 102 106 103 107 @ARTICLE{Adcroft_Campin_OM04, … … 109 113 pages = {269--284}, 110 114 doi = {10.1016/j.ocemod.2003.09.003}, 111 url = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003}112 115 } 113 116 … … 192 195 pages = {1942--1954}, 193 196 doi = {10.1016/j.dsr.2009.06.004}, 194 url = {http://dx.doi.org/10.1016/j.dsr.2009.06.004}195 197 } 196 198 … … 221 223 volume = {107}, 222 224 doi = {10.1029/2001JC000922}, 223 url = {http://dx.doi.org/10.1029/2001JC000922}224 225 } 225 226 … … 232 233 volume = {1}, pages = {71--106}, 233 234 doi = {10.1029/2001JC000922}, 234 url = {http://dx.doi.org/10.1029/2001JC000922}235 235 } 236 236 … … 257 257 pages = {543--567}, 258 258 doi = {10.1007/s10236-006-0082-1}, 259 url = {http://dx.doi.org/10.1007/s10236-006-0082-1}260 259 } 261 260 … … 350 349 pages = {909--925}, 351 350 doi = {10.1007/s00382-008-0429-z}, 352 url = {http://dx.doi.org/10.1007/s00382-008-0429-z}353 351 } 354 352 … … 371 369 pages = {L03609}, 372 370 doi = {10.1029/2007GL032644}, 373 url = {http://dx.doi.org/10.1029/2007GL032644}374 371 } 375 372 … … 383 380 pages = {6599-6615}, 384 381 doi = {10.1175/2008JCLI2404.1}, 385 url = {http://dx.doi.org/10.1175/2008JCLI2404.1}386 382 } 387 383 … … 486 482 volume = {61-62}, 487 483 issn = {03770265}, 488 url = {http://dx.doi.org/10.1016/j.dynatmoce.2013.02.002},489 484 doi = {10.1016/j.dynatmoce.2013.02.002}, 490 485 journal = DAO, … … 511 506 pages = {174--184}, 512 507 doi = {10.1016/j.ocemod.2009.01.004}, 513 url = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004}514 508 } 515 509 … … 533 527 issn = "1463-5003", 534 528 doi = "http://dx.doi.org/10.1016/j.ocemod.2013.02.004", 535 url = "http://www.sciencedirect.com/science/article/pii/S1463500313000309",536 529 } 537 530 … … 544 537 NUMBER = {5}, 545 538 PAGES = {1285--1297}, 546 URL = {http://www.geosci-model-dev.net/8/1285/2015/},547 539 DOI = {10.5194/gmd-8-1285-2015} 548 540 } … … 577 569 pages = {C12003}, 578 570 doi = {10.1029/2004JC002378}, 579 url = {http://dx.doi.org/10.1029/2004JC002378}580 571 } 581 572 … … 635 626 pages = {347--361}, 636 627 doi = {10.1016/S1463-5003(02)00009-4}, 637 url = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4}638 628 } 639 629 … … 655 645 pages = {1--14}, 656 646 doi = {10.1016/j.ocemod.2008.05.005}, 657 url = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005}658 647 } 659 648 … … 675 664 volume = {30}, number = {6}, 676 665 doi = {10.1029/2002GL016473}, 677 url = {http://dx.doi.org/10.1029/2002GL016473}678 666 } 679 667 … … 790 778 journal = {J. Climate}, 791 779 pages = {1192--1208}, 792 url = {http://dx.doi.org/10.1175/2007JCLI1508.1}793 780 } 794 781 @ARTICLE{Dandonneau_al_S04, … … 824 811 title = {On Antarctic Bottom Water consumption in the abyssal ocean}, 825 812 issn = {0022-3670}, 826 url = {http://dx.doi.org/10.1175/JPO-D-14-0201.1}, 827 doi = {10.1175/JPO-D-14-0201.1}, 813 doi= {10.1175/JPO-D-14-0201.1}, 828 814 abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.}, 829 815 journal = {Journal of Physical Oceanography}, … … 836 822 title = {The impact of a variable mixing efficiency on the abyssal overturning}, 837 823 issn = {0022-3670}, 838 url = {http://dx.doi.org//10.1175/JPO-D-14-0259.1},839 824 doi = {10.1175/JPO-D-14-0259.1}, 840 825 abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.}, … … 889 874 pages = {GB3017}, 890 875 doi = {10.1029/2003GB002150}, 891 url = {http://dx.doi.org/10.1029/2003GB002150}892 876 } 893 877 … … 941 925 pages = {L01305}, 942 926 doi = {10.1029/2003GL018906}, 943 url = {http://dx.doi.org/10.1029/2003GL018906}944 927 } 945 928 … … 978 961 volume = {10}, number = {1-2}, 979 962 pages = {257--273}, 980 url = {http://dx.doi.org/10.1007/s10652-009-9159-y}963 doi = {10.1007/s10652-009-9159-y} 981 964 } 982 965 … … 1001 984 pages = {L12605}, 1002 985 doi = {10.1029/2005GL022463}, 1003 url = {http://dx.doi.org/10.1029/2005GL022463}1004 986 } 1005 987 … … 1190 1172 pages = {14703--14726} 1191 1173 } 1174 1192 1175 @ARTICLE{Gerdes1991, 1193 1176 Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen}, … … 1197 1180 Pages = {211--226}, 1198 1181 Title = {The influence of numerical advection schemes on the results of ocean general circulation models}, 1199 Url = {http://dx.doi.org/10.1007/BF00210006},1200 1182 Volume = {5}, 1201 1183 Year = {1991}, … … 1219 1201 title = {Global prediction of abyssal hill root-mean-square heights from small-scale altimetric gravity variability}, 1220 1202 issn = {2156-2202}, 1221 url = {http://dx.doi.org/10.1029/2010JB007867},1222 1203 doi = {10.1029/2010JB007867}, 1223 1204 abstract = {Abyssal hills, which are pervasive landforms on the seafloor of the Earth's oceans, represent a potential tectonic record of the history of mid-ocean ridge spreading. However, the most detailed global maps of the seafloor, derived from the satellite altimetry-based gravity field, cannot be used to deterministically characterize such small-scale ({\textless}10 km) morphology. Nevertheless, the small-scale variability of the gravity field can be related to the statistical properties of abyssal hill morphology using the upward continuation formulation. In this paper, I construct a global prediction of abyssal hill root-mean-square (rms) heights from the small-scale variability of the altimetric gravity field. The abyssal hill-related component of the gravity field is derived by first masking distinct features, such as seamounts, mid-ocean ridges, and continental margins, and then applying a newly designed adaptive directional filter algorithm to remove fracture zone/discontinuity fabric. A noise field is derived empirically by correlating the rms variability of the small-scale gravity field to the altimetric noise field in regions of very low relief, and the noise variance is subtracted from the small-scale gravity variance. Suites of synthetically derived, abyssal hill formed gravity fields are generated as a function of water depth, basement rms heights, and sediment thickness and used to predict abyssal hill seafloor rms heights from corrected small-scale gravity rms height. The resulting global prediction of abyssal hill rms heights is validated qualitatively by comparing against expected variations in abyssal hill morphology and quantitatively by comparing against actual measurements of rms heights. Although there is scatter, the prediction appears unbiased.}, … … 1246 1227 pages = {L05609}, 1247 1228 doi = {10.1029/2006GL028210}, 1248 url = {http://dx.doi.org/10.1029/2006GL028210}1249 1229 } 1250 1230 … … 1256 1236 volume = {43}, 1257 1237 pages = {838--862}, 1258 url ={http://dx.doi.org/10.1175/JPO-D-11-0188.1}1238 doi = {10.1175/JPO-D-11-0188.1} 1259 1239 } 1260 1240 … … 1298 1278 pages = {1--46}, 1299 1279 doi = {10.1016/j.ocemod.2008.08.007}, 1300 url = {http://dx.doi.org/10.1016/j.ocemod.2008.08.007}1301 1280 } 1302 1281 … … 1339 1318 volume = {128}, 1340 1319 pages = {2935–-2946}, 1341 url = {http://dx.doi.org/10.1175/1520-0493(2000)128}1320 doi = {10.1175/1520-0493(2000)128} 1342 1321 } 1343 1322 … … 1488 1467 pages = {70--86}, 1489 1468 doi = {10.1016/j.ocemod.2009.12.003}, 1490 url = {http://dx.doi.org/10.1016/j.ocemod.2009.12.003},1491 1469 issn = {1463-5003}, 1492 1470 } … … 1553 1531 pages = {891--908}, 1554 1532 doi = {10.1007/s00382-008-0416-4}, 1555 url = {http://dx.doi.org/10.1007/s00382-008-0416-4}1556 1533 } 1557 1534 … … 1645 1622 volume = {35}, number = {4}, 1646 1623 pages = {669--683}, 1647 url = {http://dx.doi.org/10.1007/s00382-009-0655-z}1624 doi = {10.1007/s00382-009-0655-z} 1648 1625 } 1649 1626 … … 1663 1640 volume = {44}, 1664 1641 issn = {0022-3670}, 1665 url = {http://dx.doi.org/10.1175/JPO-D-14-0027.1},1666 1642 doi = {10.1175/JPO-D-14-0027.1}, 1667 1643 number = {10}, … … 1801 1777 pages = {891--904}, 1802 1778 doi = {10.1007/s00382-009-0642-4}, 1803 url = {http://dx.doi.org/10.1007/s00382-009-0642-4}1804 1779 } 1805 1780 … … 1812 1787 pages = {289--309}, 1813 1788 doi = {10.1007/s10236-008-0155-4}, 1814 url = {http://dx.doi.org/10.1007/s10236-008-0155-4}1815 1789 } 1816 1790 … … 1823 1797 pages = {L04604}, 1824 1798 doi = {10.1029/2006GL028405}, 1825 url = {http://dx.doi.org/10.1029/2006GL028405}1826 1799 } 1827 1800 … … 1834 1807 pages = {275--288}, 1835 1808 doi = {10.1007/s10236-008-0154-5}, 1836 url = {http://dx.doi.org/10.1007/s10236-008-0154-5}1837 1809 } 1838 1810 … … 1862 1834 issn = "1463-5003", 1863 1835 doi = "http://dx.doi.org/10.1016/j.ocemod.2012.04.007", 1864 url = "http://www.sciencedirect.com/science/article/pii/S1463500312000674",1865 1836 } 1866 1837 … … 1875 1846 pages = {124--148}, 1876 1847 doi = {10.1016/j.ocemod.2015.06.006}, 1877 url = {http://dx.doi.org/10.1016/j.ocemod.2015.06.006}1878 1848 } 1879 1849 … … 1911 1881 volume = {34}, number = {1-2}, 1912 1882 doi = {10.1016/j.ocemod.2010.04.001}, 1913 url = {http://dx.doi.org/10.1016/j.ocemod.2010.04.001}1914 1883 } 1915 1884 … … 1959 1928 pages = {363--404}, 1960 1929 doi = {10.1029/94RG01872}, 1961 url = {http://dx.doi.org/10.1029/94RG01872}1962 1930 } 1963 1931 … … 2001 1969 pages = {1--14}, 2002 1970 doi = {10.1016/j.ocemod.2008.11.007}, 2003 url = {http://dx.doi.org/10.1016/j.ocemod.2008.11.007}2004 1971 } 2005 1972 … … 2020 1987 pages = {88-94}, 2021 1988 doi = {10.1016/j.ocemod.2009.06.006}, 2022 url = {http://dx.doi.org/10.1016/j.ocemod.2009.06.006}2023 1989 } 2024 1990 … … 2030 1996 volume = {37}, pages = {139--152}, 2031 1997 doi = {10.1016/j.ocemod.2011.02.001}, 2032 url = {http://dx.doi.org/10.1016/j.ocemod.2011.02.001}2033 1998 } 2034 1999 … … 2058 2023 year = {2002}, 2059 2024 doi = {10.1029/2001JC000841}, 2060 url = {http://dx.doi.org/10.1029/2001JC000841}2061 2025 } 2062 2026 … … 2070 2034 pages = {3345}, 2071 2035 doi = {10.1029/2002JC001704}, 2072 url = {http://dx.doi.org/10.1029/2002JC001704}2073 2036 } 2074 2037 … … 2081 2044 pages = {L21602}, 2082 2045 doi = {10.1029/2009GL040145}, 2083 url = {http://dx.doi.org/10.1029/2009GL040145}2084 2046 } 2085 2047 … … 2244 2206 year = {1991}, 2245 2207 author = {G. Madec and M. Cr\'{e}pon} 2246 2208 } 2247 2209 2248 2210 @ARTICLE{Madec1997, … … 2349 2311 pages = {61--89}, 2350 2312 doi = {10.1016/j.ocemod.2007.07.005}, 2351 url = {http://dx.doi.org/10.1016/j.ocemod.2007.07.005}2352 2313 } 2353 2314 … … 2360 2321 NUMBER = {5}, 2361 2322 PAGES = {1547--1562}, 2362 url = {HTTP://www.geosci-model-dev.net/8/1547/2015/},2363 2323 DOI = {10.5194/gmd-8-1547-2015} 2364 2324 } … … 2373 2333 issn = {1463-5003}, 2374 2334 doi = {10.1016/j.ocemod.2010.05.001}, 2375 url = {http://dx.doi.org/10.1016/j.ocemod.2010.05.001}2376 2335 } 2377 2336 … … 2409 2368 pages = {1--26}, 2410 2369 doi = {10.1007/s00382-009-0640-6}, 2411 url = {http://dx.doi.org/10.1007/s00382-009-0640-6}2412 2370 } 2413 2371 … … 2433 2391 and H. Sasaki and K. Takahashi and F. Svensson}, 2434 2392 doi = {10.1007/978-3-540-74384-2}, 2435 url = {http://dx.doi.org/10.1007/978-3-540-74384-2}2436 2393 } 2437 2394 … … 2447 2404 pages = {L07703}, 2448 2405 doi = {10.1029/2004GL021980}, 2449 url = {http://dx.doi.org/10.1029/2004GL021980}2450 2406 } 2451 2407 … … 2476 2432 year = {2004}, 2477 2433 doi = {10.1175/2517.1}, 2478 URL = {http://journals.ametsoc.org/doi/abs/10.1175/2517.1}2479 2434 } 2480 2435 … … 2613 2568 pages = {71--92}, 2614 2569 doi = {10.1175/2008JCLI2261.1}, 2615 url = {http://dx.doi.org/10.1175/2008JCLI2261.1}2616 2570 } 2617 2571 … … 2670 2624 pages = {193--254}, 2671 2625 doi = {10.2307/1993202}, 2672 url = {http://dx.doi.org/10.2307/1993202}2673 2626 } 2674 2627 … … 2742 2695 pages = {L14314}, 2743 2696 doi = {10.1029/2004GL019764}, 2744 url = {http://dx.doi.org/10.1029/2004GL019764}2745 2697 } 2746 2698 … … 2752 2704 volume = {30}, number = {2}, 2753 2705 doi = {10.1029/2002GL016003}, 2754 url = {http://dx.doi.org/10.1029/2002GL016003}2755 2706 } 2756 2707 … … 2763 2714 NUMBER = {15}, 2764 2715 PAGES = {4077--4098}, 2765 URL = {HTTP://www.biogeosciences.net/11/4077/2014/},2766 2716 DOI = {10.5194/bg-11-4077-2014} 2767 2717 } … … 2794 2744 issn = "1463-5003", 2795 2745 doi = "10.1016/j.ocemod.2015.04.002", 2796 url = "http://dx.doi.org/10.1016/j.ocemod.2015.04.002"2797 2746 } 2798 2747 … … 2805 2754 year = "2015", 2806 2755 doi = "10.1175/JPO-D-15-0080.1", 2807 url = "http://dx.doi.org/10.1175/JPO-D-15-0080.1"2808 2756 } 2809 2757 … … 2826 2774 volume = {8}, pages={2991--3005}, 2827 2775 doi = {10.5194/gmd-8-2991-2015}, 2828 url = {http://dx.doi.org/10.5194/gmd-8-2991-2015}2829 2776 } 2830 2777 … … 2884 2831 pages = {3090}, 2885 2832 doi = {10.1029/2001JC001047}, 2886 url = {http://dx.doi.org/10.1029/2001JC001047}2887 2833 } 2888 2834 … … 2903 2849 pages = {submitted}, 2904 2850 } 2851 2905 2852 @ARTICLE{Simmons_al_OM04, 2906 2853 author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver}, … … 2998 2945 pages = {3029--3042}, 2999 2946 doi = {10.1016/j.dsr2.2004.09.008}, 3000 url = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008}3001 2947 } 3002 2948 … … 3009 2955 pages = {2106}, 3010 2956 doi = {10.1029/2002GL015633}, 3011 url = {http://dx.doi.org/10.1029/2002GL015633}3012 2957 } 3013 2958 … … 3142 3087 pages = {568--580}, 3143 3088 doi = {10.1007/s10236-006-0069-y}, 3144 url = {http://dx.doi.org/10.1007/s10236-006-0069-y}3145 3089 } 3146 3090 … … 3234 3178 pages = {33--53}, 3235 3179 doi = {10.1016/j.ocemod.2008.10.005}, 3236 url = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005}3237 3180 } 3238 3181 … … 3256 3199 pages = {81--113}, 3257 3200 doi = {10.1016/j.ocemod.2003.12.003}, 3258 url = {http://dx.doi.org/j.ocemod.2003.12.003}3259 3201 } 3260 3202 … … 3323 3265 pages = {108--123}, 3324 3266 doi = {10.1016/j.dynatmoce.2009.02.001}, 3325 url = {http://dx.doi.org/10.1016/j.dynatmoce.2009.02.001}3326 3267 } 3327 3268 … … 3334 3275 pages = {L08706}, 3335 3276 doi = {10.1029/2007GL029275}, 3336 url = {http://dx.doi.org/10.1029/2007GL029275}3337 3277 } 3338 3278 -
branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.sty
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branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.tex
r9393 r9394 140 140 141 141 142 %% Bibliography 143 144 \cleardoublepage 145 \phantomsection 146 \addcontentsline{toc}{chapter}{Bibliography} 147 \bibliography{../tex_main/NEMO_manual} 148 149 142 150 %% Index 143 151 152 \cleardoublepage 153 \phantomsection 144 154 \addcontentsline{toc}{chapter}{Index} 145 155 \printindex 146 156 147 157 148 %% Bibliography149 150 \addcontentsline{toc}{chapter}{Bibliography}151 \bibliography{../tex_main/NEMO_manual}152 153 154 158 \end{document}
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