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Changeset 9394 for branches/2017/dev_merge_2017/DOC/tex_main – NEMO

Ignore:
Timestamp:
2018-03-13T21:21:44+01:00 (6 years ago)
Author:
nicolasmartin
Message:

Fix several typos, reverse (biblio then index) and shrink the manual backmatter (columns, font size, separator height) #1793

Location:
branches/2017/dev_merge_2017/DOC/tex_main
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.bib

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    109113  pages = {269--284}, 
    110114  doi = {10.1016/j.ocemod.2003.09.003}, 
    111   url = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003} 
    112115} 
    113116 
     
    192195  pages = {1942--1954}, 
    193196  doi = {10.1016/j.dsr.2009.06.004}, 
    194   url = {http://dx.doi.org/10.1016/j.dsr.2009.06.004} 
    195197} 
    196198 
     
    221223  volume = {107}, 
    222224  doi = {10.1029/2001JC000922}, 
    223   url = {http://dx.doi.org/10.1029/2001JC000922} 
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    225226 
     
    232233  volume = {1}, pages = {71--106}, 
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    236236 
     
    257257  pages = {543--567}, 
    258258  doi = {10.1007/s10236-006-0082-1}, 
    259   url = {http://dx.doi.org/10.1007/s10236-006-0082-1} 
    260259} 
    261260 
     
    350349  pages = {909--925}, 
    351350  doi = {10.1007/s00382-008-0429-z}, 
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    353351} 
    354352 
     
    371369  pages = {L03609}, 
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    374371} 
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    383380  pages = {6599-6615}, 
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    386382} 
    387383 
     
    486482   volume = {61-62}, 
    487483   issn = {03770265}, 
    488    url = {http://dx.doi.org/10.1016/j.dynatmoce.2013.02.002}, 
    489484   doi = {10.1016/j.dynatmoce.2013.02.002}, 
    490485   journal = DAO, 
     
    511506  pages = {174--184}, 
    512507  doi = {10.1016/j.ocemod.2009.01.004}, 
    513   url = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004} 
    514508} 
    515509 
     
    533527issn = "1463-5003", 
    534528doi = "http://dx.doi.org/10.1016/j.ocemod.2013.02.004", 
    535 url = "http://www.sciencedirect.com/science/article/pii/S1463500313000309", 
    536529} 
    537530 
     
    544537NUMBER = {5}, 
    545538PAGES = {1285--1297}, 
    546 URL = {http://www.geosci-model-dev.net/8/1285/2015/}, 
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    580571} 
    581572 
     
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    636627  doi = {10.1016/S1463-5003(02)00009-4}, 
    637   url = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4} 
    638628} 
    639629 
     
    655645  pages = {1--14}, 
    656646  doi = {10.1016/j.ocemod.2008.05.005}, 
    657   url = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005} 
    658647} 
    659648 
     
    675664  volume = {30},  number = {6}, 
    676665  doi = {10.1029/2002GL016473}, 
    677   url = {http://dx.doi.org/10.1029/2002GL016473} 
    678666} 
    679667 
     
    790778   journal = {J. Climate}, 
    791779   pages = {1192--1208}, 
    792         url = {http://dx.doi.org/10.1175/2007JCLI1508.1} 
    793780} 
    794781@ARTICLE{Dandonneau_al_S04, 
     
    824811   title = {On Antarctic Bottom Water consumption in the abyssal ocean}, 
    825812   issn = {0022-3670}, 
    826    url = {http://dx.doi.org/10.1175/JPO-D-14-0201.1}, 
    827    doi = {10.1175/JPO-D-14-0201.1}, 
     813   doi= {10.1175/JPO-D-14-0201.1}, 
    828814   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.}, 
    829815   journal = {Journal of Physical Oceanography}, 
     
    836822   title = {The impact of a variable mixing efficiency on the abyssal overturning}, 
    837823   issn = {0022-3670}, 
    838    url = {http://dx.doi.org//10.1175/JPO-D-14-0259.1}, 
    839824   doi = {10.1175/JPO-D-14-0259.1}, 
    840825   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.}, 
     
    889874  pages = {GB3017}, 
    890875  doi = {10.1029/2003GB002150}, 
    891   url = {http://dx.doi.org/10.1029/2003GB002150} 
    892876} 
    893877 
     
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    943   url = {http://dx.doi.org/10.1029/2003GL018906} 
    944927} 
    945928 
     
    978961  volume = {10},  number = {1-2}, 
    979962  pages = {257--273}, 
    980   url = {http://dx.doi.org/10.1007/s10652-009-9159-y} 
     963  doi = {10.1007/s10652-009-9159-y} 
    981964} 
    982965 
     
    1001984  pages = {L12605}, 
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    1003   url = {http://dx.doi.org/10.1029/2005GL022463} 
    1004986} 
    1005987 
     
    11901172  pages = {14703--14726} 
    11911173} 
     1174 
    11921175@ARTICLE{Gerdes1991, 
    11931176   Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen}, 
     
    11971180   Pages = {211--226}, 
    11981181   Title = {The influence of numerical advection schemes on the results of ocean general circulation models}, 
    1199    Url = {http://dx.doi.org/10.1007/BF00210006}, 
    12001182   Volume = {5}, 
    12011183   Year = {1991}, 
     
    12191201   title = {Global prediction of abyssal hill root-mean-square heights from small-scale altimetric gravity variability}, 
    12201202   issn = {2156-2202}, 
    1221    url = {http://dx.doi.org/10.1029/2010JB007867}, 
    12221203   doi = {10.1029/2010JB007867}, 
    12231204   abstract = {Abyssal hills, which are pervasive landforms on the seafloor of the Earth's oceans, represent a potential tectonic record of the history of mid-ocean ridge spreading. However, the most detailed global maps of the seafloor, derived from the satellite altimetry-based gravity field, cannot be used to deterministically characterize such small-scale ({\textless}10 km) morphology. Nevertheless, the small-scale variability of the gravity field can be related to the statistical properties of abyssal hill morphology using the upward continuation formulation. In this paper, I construct a global prediction of abyssal hill root-mean-square (rms) heights from the small-scale variability of the altimetric gravity field. The abyssal hill-related component of the gravity field is derived by first masking distinct features, such as seamounts, mid-ocean ridges, and continental margins, and then applying a newly designed adaptive directional filter algorithm to remove fracture zone/discontinuity fabric. A noise field is derived empirically by correlating the rms variability of the small-scale gravity field to the altimetric noise field in regions of very low relief, and the noise variance is subtracted from the small-scale gravity variance. Suites of synthetically derived, abyssal hill formed gravity fields are generated as a function of water depth, basement rms heights, and sediment thickness and used to predict abyssal hill seafloor rms heights from corrected small-scale gravity rms height. The resulting global prediction of abyssal hill rms heights is validated qualitatively by comparing against expected variations in abyssal hill morphology and quantitatively by comparing against actual measurements of rms heights. Although there is scatter, the prediction appears unbiased.}, 
     
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    24132371 
     
    24332391  and H. Sasaki and K. Takahashi and F. Svensson}, 
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    24802435 
     
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    26162570} 
    26172571 
     
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    27972746} 
    27982747 
     
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    28082756} 
    28092757 
     
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    2828   url = {http://dx.doi.org/10.5194/gmd-8-2991-2015} 
    28292776} 
    28302777 
     
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    28872833} 
    28882834 
     
    29032849  pages = {submitted}, 
    29042850} 
     2851 
    29052852@ARTICLE{Simmons_al_OM04, 
    29062853  author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver}, 
     
    29982945  pages = {3029--3042}, 
    29992946  doi = {10.1016/j.dsr2.2004.09.008}, 
    3000   url = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008} 
    30012947} 
    30022948 
     
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    30102956  doi = {10.1029/2002GL015633}, 
    3011   url = {http://dx.doi.org/10.1029/2002GL015633} 
    30122957} 
    30132958 
     
    31423087  pages = {568--580}, 
    31433088  doi = {10.1007/s10236-006-0069-y}, 
    3144   url = {http://dx.doi.org/10.1007/s10236-006-0069-y} 
    31453089} 
    31463090 
     
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    32353179  doi = {10.1016/j.ocemod.2008.10.005}, 
    3236   url = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005} 
    32373180} 
    32383181 
     
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    32573200  doi = {10.1016/j.ocemod.2003.12.003}, 
    3258   url = {http://dx.doi.org/j.ocemod.2003.12.003} 
    32593201} 
    32603202 
     
    33233265  pages = {108--123}, 
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    3325   url = {http://dx.doi.org/10.1016/j.dynatmoce.2009.02.001} 
    33263267} 
    33273268 
     
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    3336   url = {http://dx.doi.org/10.1029/2007GL029275} 
    33373277} 
    33383278 
  • branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.sty

    r9393 r9394  
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    20 \usepackage{subfiles}   % subdocs 
     9\usepackage{natbib}     %% bib 
     10\usepackage{caption}    %% caption 
     11\usepackage{xcolor}     %% color 
     12\usepackage{silence}    %% compilation 
     13\usepackage{times}      %% font 
     14\usepackage{hyperref}   %% hyper 
     15\usepackage{idxlayout}  %% index 
     16\usepackage{enumitem}   %% list 
     17\usepackage{minted}     %% listing 
     18\usepackage{amsmath}    %% maths 
     19\usepackage{fancyhdr}   %% page 
     20\usepackage{minitoc}    %% toc 
     21\usepackage{subfiles}   %% subdocs 
    2122 
    2223 
     
    3435   colorlinks 
    3536} 
     37\idxlayout{font=footnotesize, columns=3} 
     38\renewcommand{\bibfont}{\footnotesize} 
     39\renewcommand{\bibsep}{3pt} 
    3640 
    3741 
     
    4145\pagestyle{fancy} 
    4246\bibliographystyle{../tex_sub/ametsoc} 
     47 
    4348 
    4449%% Additionnal fonts 
     
    121126%% New commands 
    122127 
    123 \newcommand{ \gmcomment}[1]{} 
    124 \newcommand{ \sfcomment}[1]{} 
     128\newcommand{\gmcomment}[1]{} 
     129\newcommand{\sfcomment}[1]{} 
    125130\newcommand{\sgacomment}[1]{} 
    126131 
     
    161166\newcommand{\mygstrut}[2]{\rule[#1 em]{0pt}{#2 em}} 
    162167\newcommand{\mystrut}{\rule[-.9 em]{0pt}{1.79 em}} 
     168 
     169\newcommand{\doi}[1]{\href{http://dx.doi.org/#1}{full-text}} 
  • branches/2017/dev_merge_2017/DOC/tex_main/NEMO_manual.tex

    r9393 r9394  
    140140 
    141141 
     142%% Bibliography 
     143 
     144\cleardoublepage 
     145\phantomsection 
     146\addcontentsline{toc}{chapter}{Bibliography} 
     147\bibliography{../tex_main/NEMO_manual} 
     148 
     149 
    142150%% Index 
    143151 
     152\cleardoublepage 
     153\phantomsection 
    144154\addcontentsline{toc}{chapter}{Index} 
    145155\printindex 
    146156 
    147157 
    148 %% Bibliography 
    149  
    150 \addcontentsline{toc}{chapter}{Bibliography} 
    151 \bibliography{../tex_main/NEMO_manual} 
    152  
    153  
    154158\end{document} 
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