Timeline
2019-09-10:
- 18:35 Changeset [11529] by
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ENHANCE-02_ISF: fixes for ice sheet coupling (ticket #2142)
- 18:28 Changeset [11528] by
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dev_r10984_HPC-13 : update mpp doc
- 17:46 Changeset [11527] by
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Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Removal of TOP-specific time indices (Nnn_trc etc.). This completes the removal of the trc sub-timestepping option and dynamics, active tracers and passive tracers must now have common time-steps. Note time-filtering for passive tracers is done in trc_trp (trc_atf) but the (now shared) time indices are not swapped until after calls to tra_atf, dyn_atf and ssh_atf in step. Calls to trc routines after trc_atf have had their time-index arguments adjusted accordingly. These changes have been fully SETTE-tested.
- 17:20 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 17:02 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 16:24 Changeset [11526] by
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update doc namelists
- 16:18 Changeset [11525] by
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dev_r10984_HPC-13 : merge with trunk@,11524 see #2285
- 16:09 Changeset [11524] by
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Bugfixes
- 14:21 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 13:17 Changeset [11523] by
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ENHANCE-02_ISF: rm debug print + simplification + rm remaining old namelist parameter (ticket #2142))
- 13:03 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 12:21 Changeset [11522] by
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Review the beginning of the manual
Move the changelog to the common part shared between 3 manuals
Add few paragraphs on the development workflow
Improve the introduction of the manual
- 11:49 Changeset [11521] by
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ENHANCE-02_ISF: fix issue with ice sheet coupling and conservation + other minor changes (ticket #2142)
- 10:28 Changeset [11520] by
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debug spitz12
2019-09-09:
- 20:41 Changeset [11519] by
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debug bdy in case no sea ice
- 19:57 Changeset [11518] by
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add the final touch to the famous gaston's branch. More precisely, add the possibility to have melt ponds as input file when using bdy
- 18:56 Ticket #2039 (HPC-13_Mixed_precision_study-13.1_Assessment) closed by
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fixed
- 17:04 Changeset [11517] by
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minor updates
- 16:35 Changeset [11516] by
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Create HPC-02 branch - ticket #2009
- 16:07 Changeset [11515] by
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Style changes
- logo for DOI links
- Tweak cmds to apply manual color to chapter headings
- Fix headings on bibliography and indexes sections
- Remove minitoc pkg and use instead appropriate \chaptertoc custom cmd
- 15:38 Changeset [11514] by
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debug ponds with bdy (fraction instead of concentration)
- 14:31 Changeset [11513] by
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correct scale factors for ice rheology
- 12:19 2019WP/ENHANCE-09_Jerome_freesurface edited by
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(diff)
- 12:05 Changeset [11512] by
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dev_r10984_HPC-13 : merge with trunk@11511, see #2285
- 11:51 2019WP/AGRIF-05_jchanut_vert_coord_interp edited by
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(diff)
- 11:43 2019WP/ENHANCE-10_Jerome_ztilde edited by
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(diff)
2019-09-06:
- 19:41 Changeset [11511] by
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improve conservation checks
- 18:08 Changeset [11510] by
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add ponds for bdy
- 18:07 Changeset [11509] by
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Merge in all the 1D river runoff code as I comitted to the GO6 package branch (skipping anything to do with Antarctic and Greenland icesheet mass).
- 17:53 Changeset [11508] by
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Make branch to pass icesheet mass to the ocean to feed iceberg calving and icesheet melt
- 17:19 Changeset [11507] by
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add a new functionality for bdy ice by allowing the user to have input files for ice/snw temperature and salinity instead of setting a constant value. Also, input files can have any number of categories
- 15:24 Working Groups edited by
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(diff)
- 15:09 2019WP/HPC-08_Mirek Andrejczuk_fldread_with_XIOS edited by
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(diff)
- 13:47 2019WP/ASINTER-05_Brodeau_Advanced_Bulk edited by
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(diff)
- 13:46 2020WP/ASINTER-03_laurent_bulk_and_wave edited by
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(diff)
- 13:44 2020WP/ASINTER-03_laurent_bulk_and_wave edited by
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(diff)
- 13:16 2019WP/ASINTER-05_Brodeau_Advanced_Bulk edited by
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(diff)
- 11:41 Changeset [11506] by
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Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Small correction to trcstp.F90 to restore SETTE restartability (GYRE_PISCES, at least) with the current state of the branch. Next stage will be to remove the TOP-specific time indices (Nnn_trc etc.)
- 11:31 Changeset [11505] by
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Deleting useless CNRS specific development branches
- 09:23 Changeset [11504] by
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2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Strip out all references to nn_dttrc
and the trcsub.F90 module. Notes:
- This version of the code currently breaks the GYRE_PISCES test in SETTE.
- With the removal of this option, TOP should use the OCE time index variables, eg. Nbb_trc → Nbb, nittrc000 → nit0000 etc.
2019-09-05:
- 19:58 Changeset [11503] by
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add -Dkey_nosignedzero on METO cray compiler arch file
- 17:43 Working Groups edited by
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(diff)
- 17:40 Working Groups edited by
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(diff)
- 17:39 Working Groups edited by
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(diff)
- 17:30 Working Groups edited by
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(diff)
- 17:00 Changeset [11502] by
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Make branch.
- 14:44 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 14:43 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 09:33 Ticket #2315 (ENHANCE-11_CEthe_Shaconemo_diags) created by
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BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
2019-09-04:
- 23:23 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 19:41 Changeset [11501] by
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introduce a point-to-point conservation check, stop the model if it fails and write the issue in a file
- 15:53 2019WP/HPC-06_SimonM-extendedhaloes edited by
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(diff)
- 15:51 2019WP edited by
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(diff)
- 15:49 Changeset [11500] by
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In sbc_cpl_ice_flx add IF blocks so that code is only called on timesteps when coupling occurs.
- 15:48 Changeset [11499] by
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Branch for testing conservation of coupling interface and adding effieciency improvements to the interface
- 14:25 Ticket #2218 (PUBS-06_Z_coordinates_comparison) closed by
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fixed
- 12:18 Changeset [11498] by
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Removal of branch fix_ticket2302_sette (ticket #2302)
- 12:14 Ticket #2302 (SETTE fails to complete the AGRIF_DEMO test if ADD_NOSIGNEDZERO has been ...) closed by
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fixed: In 11497: […]
- 12:14 Changeset [11497] by
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Merge of branch fix_ticket2302_sette into main SETTE version (ticket #2302)
- 10:36 Changeset [11496] by
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Create HPC-12 branch - ticket #2011
2019-09-03:
- 22:33 New reply on Beginner created by
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[CPP] NEMO 4.0 and the keys
- 22:15 Changelog edited by
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(diff)
- 22:00 New reply on Skilled created by
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[land-proc] NEMO 3.6 + XIOS 2.0 segfault issue while removing land grid cells (invalid pointer - xios_server)
- 21:57 New reply on Beginner created by
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[inputs] AMM12 files moved?
- 21:52 New reply on Beginner created by
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[XIOS] Can not running nemo
- 21:46 New reply on Skilled created by
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[AGRIF] Intel build (with key_agrif) based on ORCA2_LIM seg faults
- 21:21 New reply on Interoperability created by
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[XIOS] XIOS detached mode
- 21:06 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 20:36 New reply on Skilled created by
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[BDY] Nesting with dyn3d open boundary conditions
- 20:28 New reply on Skilled created by
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[tides] Setting up a Barotropic tide forcing NEMO configuration
- 20:27 New reply on Skilled created by
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[FLO] key_floats: simulations freeze
- 20:26 New reply on Skilled created by
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[tides] Boundary Tide: real and imaginary components
- 20:21 New reply on Skilled created by
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[LIM3] Question about diffusion operator
- 20:21 New reply on Skilled created by
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[strait] Volume of the domain - transport at the strait
- 20:20 New reply on Skilled created by
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[BDY] Boundary Forcing files
- 20:19 New reply on Skilled created by
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[FLO] Problem with nfloat in iom.f90
- 20:18 New reply on Skilled created by
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[BDY] &nambdy options and CFL
- 20:01 New reply on Interoperability created by
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[IO] NEMO3.3 mean and instantaneous output
- 17:54 New reply on Interoperability created by
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[OASIS] NEMO 4.0 / OASIS3-MCT 4.0 compatibility
- 17:45 Changeset [11495] by
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ENHANCE-02_ISF: fix issue in the computation of utbl and vtbl + cosmetic change (ticket #2142)
- 17:06 2019WP edited by
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(diff)
- 15:54 New topic on Forks created by
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[usp-cfg] How to build ORCA05 case and create input files
- 12:46 Changeset [11494] by
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ENHANCE-02_ISF: switch on isf param in WED025 and fix bugs in isf param code + cosmetic changes (ticket #2142)
2019-09-02:
- 20:03 Changeset [11493] by
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Revision of the method for determining the test revision in the identictest test to bring it in line with the method used in other tests (ticket #2302)
- 19:39 Changeset [11492] by
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Ensuring of output from the identictest test for all variants of incomplete tests (ticket #2302)
- 19:10 Changeset [11491] by
- 18:59 Changeset [11490] by
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Ensuring of output from the test for all variants of incomplete tests (ticket #2302)
- 18:04 New topic on Interoperability created by
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[OASIS] NEMO 4.0 / OASIS3-MCT 4.0 compatibility
- 15:30 Changeset [11489] by
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ENHANCE-02_ISF: move ln_isf out of namsbc and add an easy way to run with isf cavity and no ice shelf melt (ticket #2142)
2019-08-30:
- 20:45 Ticket #2231 (Failure of ORCA2_ICE_PISCES SETTE test) closed by
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fixed: The reported SETTE test failure appears to be resolved by [10808] and …
- 19:59 Changeset [11488] by
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ENHANCE-02_ISF: mask isf output in the open ocean + activation of bdy and tide in WED025 (ticket #2142)
- 16:59 Changeset [11487] by
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ENHANCE-02_ISF: add WED025 configuration (si3, bdy, isf, tide), (ticket #2142)
- 16:57 Changeset [11486] by
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ENHANCE-02_ISF: bug on top drag coeficient value (ticket #2142)
- 11:31 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
2019-08-29:
- 15:05 Changeset [11485] by
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Ticket #2195 add namelist variable enabling using XIOS to read tsd
- 14:58 Changeset [11484] by
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Merge in changes from GMED ticket 408 - Richard's fix for compatibility with OASIS-MCT v4.0
- 14:40 2019WP/HPC-11_Mirek_Andrejczuk_IO_with_XIOS edited by
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(diff)
- 14:39 2019WP/HPC-05_Mirek Andrejczuk_IOdev edited by
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(diff)
- 14:07 Changeset [11483] by
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2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Update more header comments and change logs.
Also remove debugging output from trcstp.F90 and correct bug in step_c1d.F90. Note C1D untested in this branch.
- 13:15 Changeset [11482] by
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Ticket #2195 read initial conditions with XIOS
- 11:29 Changeset [11481] by
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2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Delete this branch of branch as changes now merged into main branch.
- 11:23 Changeset [11480] by
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2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Merge in changes from branch of branch.
Main changes:
- "nxt" modules renamed as "atf" and now just do Asselin time filtering. The time level swapping is achieved by swapping indices.
- Some additional prognostic grid variables changed to use a time dimension.
Notes:
- This merged branch passes SETTE tests but does not identical results to the SETTE tests with the trunk@10721 unless minor bugs to do with Euler timestepping and the OFF timestepping are fixed in the trunk (NEMO tickets #2310 and #2311).
- The nn_dttrc > 1 option for TOP (TOP has a different timestep to OCE) doesn't work. But it doesn't work in the trunk or NEMO 4.0 release either.
- 09:20 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
2019-08-28:
- 18:05 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 18:02 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 17:43 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 17:39 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 17:24 Changeset [11479] by
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Allocate space for a_i_last_couple after number of ice categories has been loaded.
- 16:24 Scientific Advisory Board/Agenda/2019-09-12 edited by
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(diff)
- 14:06 New topic on Jobs created by
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[post-doc] Ocean Modeller - Overflows | Closing 8 Sep. 2019
- 11:56 New topic on Interoperability created by
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[AGRIF] ORCA2_ICE_PISCES error with trc_dta_ini
- 11:30 Changeset [11478] by
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Include initial version of updated pressure correction by Mike Bell.
- 11:27 Changeset [11477] by
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Update the pressure correction bias scheme
- 10:02 Changeset [11476] by
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ticket #2314 merge last GO8 branch
- 09:22 Changeset [11475] by
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2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Update header comments etc
and rename dom_vvl_sf_swp → dom_vvl_sf_update.
2019-08-27:
- 18:50 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 18:23 Changeset [11474] by
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Ticket #2314 merge NEMO_4.0_old_tidal_mixing
- 17:15 Changeset [11473] by
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Ticket #2314 rename MO intel architecture file
- 16:42 Changeset [11472] by
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ticket #2314 merge NEMO_4.0_GO6_mixing
- 16:38 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 16:31 Changeset [11471] by
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Branch for ticket #2314
- 16:28 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 16:26 Ticket #2314 (NEMO_SI3_decoupled) created by
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==== Context Reference branch for work on GO8 configuration to have …
- 15:30 Working Groups/Kernel edited by
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(diff)
- 15:17 Working Groups/Kernel/Members Aug2019 created by
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- 15:02 Working Groups/Kernel edited by
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(diff)
- 14:58 Working Groups/Kernel edited by
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(diff)
- 14:54 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 14:49 Working Groups/Kernel edited by
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(diff)
- 14:40 Working Groups/Kernel edited by
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(diff)
- 14:27 Working Groups/Kernel edited by
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(diff)
- 14:22 Working Groups/Kernel edited by
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(diff)
- 13:54 Working Groups/Kernel edited by
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(diff)
- 11:37 Ticket #2313 (Possible uninitialised variables in sbccpl) created by
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==== Context In the following lines of code the syntax in the ELSE IF …
2019-08-26:
2019-08-23:
- 19:59 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 19:46 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 19:12 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
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(diff)
- 14:37 Working Groups/HPC edited by
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(diff)
- 14:37 Working Groups/HPC edited by
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(diff)
- 14:16 Working Groups/HPC edited by
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(diff)
- 14:05 Working Groups/HPC/Members June2019 edited by
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(diff)
- 12:23 Changeset [11470] by
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Branch to test SLA assim changes in NWS
- 12:13 Working Groups/HPC/Members June2019 edited by
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(diff)
- 11:53 Working Groups/HPC/Members June2019 created by
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- 11:49 Working Groups/HPC edited by
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(diff)
- 11:49 Working Groups/HPC/Members2018 created by
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- 11:47 Working Groups/HPC edited by
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(diff)
- 11:43 Working Groups/HPC edited by
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(diff)
- 11:39 Working Groups/HPC edited by
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(diff)
- 11:38 Working Groups/HPC/Home Page2014 created by
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- 11:12 Working Groups/HPC edited by
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(diff)
- 11:09 Working Groups/HPC/Main Activities2018 created by
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- 11:05 Working Groups/HPC edited by
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(diff)
- 11:02 Working Groups/HPC edited by
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Regrouping the page (diff)
- 10:38 Changeset [11469] by
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Remove branch which has been merged into the main obs oper branch.
- 10:37 Changeset [11468] by
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Merged changes to allow writing of climatological information to feedback files.
2019-08-22:
- 11:49 Changeset [11467] by
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Ticket #2197 allocate arrays at the beggining of the run
2019-08-21:
- 18:32 Scientific Advisory Board/Agenda/2019-01-23 edited by
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added minutes from the meeting (diff)
- 18:31 Scientific Advisory Board/Agenda/2019-01-23 edited by
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(diff)
- 09:18 Changeset [11466] by
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dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap: Bug fixes for ssh_atf routine in sshwzv.
2019-08-20:
- 18:03 Changeset [11465] by
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Branch dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap. Update VORTEX/MY_SRC/domvvl.F90 to be compatible with time swapping changes; now passes SETTE tests
- 15:39 Changeset [11464] by
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Commit changes which are in one of Jennie's orca12 branches.
- 14:14 Changeset [11463] by
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Branch: dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap. Minor bugfix in step.F90 to enable AGRIF SETTE tests to run. Also merged prettification changes to NST routines from the dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps branch. Neither AGRIF_DEMO nor VORTEX restart perfectly (drifting after 8 and 121 timesteps, respectively).
- 12:45 Changeset [11462] by
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Changes committed back to dev_r5518_obs_oper_update
- 12:41 Changeset [11461] by
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Updated check on min obs depth to use 3D depth array.
- 11:41 Changeset [11460] by
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Minor changes.
- 10:59 Changeset [11459] by
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Revision in chapter TRA : mainly removal obsolete CPP keys and update of namelist parameter
- 10:32 Changeset [11458] by
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Read mmpmask from domain_cfg instead of bottom_level
- 10:20 Changeset [11457] by
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Create a branch to read a mppmask instead of bottom level to remove processor
2019-08-19:
- 18:27 Changeset [11456] by
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First wrking version which produces correct seeming results.
- 17:36 Changeset [11455] by
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Commit version which compiles and runs. Not fully tested that it is producing the correct answer yet though.
- 17:28 Changeset [11454] by
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Final changes to make the branch work in uncoupled mode
- 16:05 Changeset [11453] by
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Add land mask when outputting wind field, to prevent XIOS errors when running
- 13:28 Changeset [11452] by
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Changes as in the original branch, plus one bug fix in oce.F90, plus changes to run with the branch but in uncoupled mode - although this is not complete yet
- 12:51 Changeset [11451] by
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Modified sheck on min obs deth to use 3D depth array.
- 12:38 Changeset [11450] by
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Create a branch for fixing reassignment of depth of near-surface obs in obs_prep
- 10:54 Changeset [11449] by
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Committed first version of changes to output climatology values at obs locations in the fdbk files.
- 10:31 Changeset [11448] by
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Clean svn keywords
- 10:29 Changeset [11447] by
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Update of branch branches/UKMO/dev_r5518_new_runoff_coupling@9566 to r6232 for UKEP runs
- 10:17 Changeset [11446] by
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Remove OASIS3 legacy code from cpl_oasis.F90. Tested to not change results.
- 09:18 Changeset [11445] by
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#2216 revision of LBC chapter: main ones in bdy description and geometry
2019-08-16:
- 17:58 Changeset [11444] by
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Delete branch as now merged into dev_r5518_GO6_package_FOAMv14.
- 13:10 Changeset [11443] by
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Revert previous commit.
- 12:32 Changeset [11442] by
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Introduction of stochastic physics in NEMO, based on Andrea Storto's code.
For details, see ticket https://code.metoffice.gov.uk/trac/utils/ticket/251.
2019-08-15:
- 18:19 Changeset [11441] by
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Make test greater than zero.
- 16:43 Changeset [11440] by
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Update after Dan's review.
- 13:03 Changeset [11439] by
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Removed section which changed obs depths where depth shallower than some limit - if the depths are too shallow, the obs should be QCed out rather than assumed valid at a different depth.
- 11:35 Changeset [11438] by
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Allow the user to turn off the creation of abort files.
Merge in changes from dev_r5518_GO6_package_abort_switch revison 10675.
- 10:44 Changeset [11437] by
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Create a branch for including climatology in the fdbk files
2019-08-14:
- 16:16 Changeset [11436] by
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Get rid of modification to sbc_cpl_init and sbc_cpl_alloc so that number of models is no longer hard coded in the latter. This must be leftover from CICE
- 14:45 Changeset [11435] by
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Various corrections on chapters
Cleaning the indexes by fixing/removing wrong entries (or appending a ? to unknown items) and
improve the classification with new index definitions for CPP keys and namelist blocks:
- from \key{...} cmd, key_ prefix no longer precedes the index entry
- namelist block declaration moves from \ngn{nam...} to \nam{...} (i.e. \ngn{namtra\_ldf} → \nam{tra\_ldf}) The expected prefix nam is added to the printed word but not the index entry.
Now we have indexes with a better sorting instead of all CPP keys under 'K' and namelists blocks under 'N'.
Fix missing space issues with alias commands by adding a trailing backslash (\NEMO\, \ie\, \eg\, …).
There is no perfect solution for this, and I prefer not using a particular package to solve it.
Review the initial LaTeX code snippet for the historic changes in chapters
Finally, for readability and future diff visualisations, please avoid writing paragraphs with continuous lines.
Break the lines around 80 to 100 characters long
2019-08-13:
- 09:18 Changeset [11434] by
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dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap :
Bug fix for trctrp.F90 and rewrite of trcrad.F90.
This version passes all SETTE tests involving PISCES, but fails the following idealised tests at this stage:
ISOMIP, OVERFLOW, LOCK_EXCHANGE.
2019-08-12:
- 21:44 Changeset [11433] by
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Pre-implementation of new cover page and new headings style for reference manuals
Cover page
The layout of the frontpage has been completely redesigned,
a coloured banner has been added to emphasize the title and easily identify each manual
between them.
The chosen color for each document (blue for NEMO, gray for SI3 and green for TOP) will be
used throughout the manual for the links and in the chapter headings.
The list of authors (writers/editors/reviewers) for the version of the manual is given next to
the abstract, which is now included in the frontpage.
A link to an existing ORCID profile for the author precedes its name.
Few settings have been added to each definitions.tex in order to adjust the rendering of the cover page (vertical spaces above and below the title, a subtitle, the width for authors list and
abstract section)
Headings
- header: chapter number and title for even pages, same infos for section otherwise
- footer: name of the manual and page numbering with the total number of pages (reverse order between odd/even pages)
For the chapter heading, a new style 'Bjornstrup' from fncychap package is now use.
Abstract
Split the section in two paragraphs for all manuals
- Common description with almost the same sentences only customized by the general infos of the model
- Specific part for the characteristics of the model
Troubleshooting
As announced, I have introduced some icons from academicons and fontawesome packages.
It required to switch from pdflatex to xelatex for the compilation and it prevents from now
the building of the whole document.
Also the PDF generated does not look nice due to the font
Work in progress…