Changes between Version 3 and Version 4 of 2021WP/VLD-05_Coward_SETTE_inputs

Timestamp:

2021-03-15T16:19:47+01:00 (3 years ago)

Author:

acc

Comment:

--

2021WP/VLD-05_Coward_SETTE_inputs

@@ -28 +28 @@
 === Implementation
 
-'''Stage 1''': Collect all input file sets for SETTE 4.2_RC (current trunk). Confirm successful SETTE results and store reference set of SETTE results. Remove redundant files and variables from contents. Make sure sensible chunking and compression choices have been made in all cases. Produce clean 'r4.2_RC_FULL' set
+'''Stage 1''': Collect all input file sets for SETTE 4.2_RC (current trunk). Confirm successful SETTE results and store reference set of SETTE results. Remove redundant files and variables from contents. Make sure sensible chunking and compression choices have been made in all cases. Produce clean 'r4.2_RC_FULL' set. [#Stage_1_details details here]
 
 '''Stage 2''': Reduce data volumes by selecting only sufficient forcing data for twice the period of each standard test. Run SETTE with reduced set and confirm unchanged results. Create recommended 'r4.2_RC' set
@@ -39 +39 @@
 
 
-'''Stage 1 details'''
+=== Stage 1 details
 
 Stage 1 involves gathering all SETTE input files and systematically checking contents for redundancy and opportunities for compression. Where chunking and compression have already been applied, it is also important to check the current settings for validity. Here is a typical example from the {{{AGRIF_DEMO_v4.x.tar}}} set:
@@ -181 +181 @@
 #
 }}}
-
+The process is similar for the other configurations based on the following original sets:
+
+{{{
+mkdir -p ../r4.2_RC_FULL
+cp -pr AGRIF_DEMO_v4.x ../r4.2_RC_FULL/AGRIF_DEMO_v4.2_RC_FULL
+cp -pr AMM12_v4.0 ../r4.2_RC_FULL/AMM12_v4.2_RC_FULL
+cp -pr ICE_AGRIF_v4.x ../r4.2_RC_FULL/ICE_AGRIF_v4.2_RC_FULL
+cp -pr ISOMIP+_v4.0 ../r4.2_RC_FULL/ISOMIP+_v4.2_RC_FULL
+cp -pr ORCA2_ICE_v4.x ../r4.2_RC_FULL/ORCA2_ICE_v4.2_RC_FULL
+cp -pr ORCA2_OFF_v4.x ../r4.2_RC_FULL/ORCA2_OFF_v4.2_RC_FULL
+cp -pr SAS_v4.x ../r4.2_RC_FULL/SAS_v4.2_RC_FULL
+cp -pr WED025_v4.2 ../r4.2_RC_FULL/WED025_v4.2_RC_FULL
+}}}
+
+It is worth noting a few redundant files that can simply be removed:
+{{{
+#
+# Remove missing (and erroneously placed) links
+#
+rm AMM12_r4.2_RC_FULL/bdydta/bdydta
+rm AMM12_r4.2_RC_FULL/fluxes/fluxes
+#
+# Remove old, unused versions
+#
+rm ORCA2_ICE_r4.2_RC_FULL/weights_core2_orca2_bicub.nc.old
+rm ORCA2_ICE_r4.2_RC_FULL/weights_core2_orca2_bilin.nc.old
+#
+# Remove old, unused versions superceded by domain configuration files
+#
+rm WED025_r4.2_RC_FULL/bathy_meter_WED025.nc
+rm WED025_r4.2_RC_FULL/coordinates_WED025.nc
+}}}
+The full set of commands used to create the r4.2_RC_FULL set is (in additional to thise already shown):
+{{{
+########## AMMcmds ##########
+cd AMM12_v4.2_RC_FULL
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn x,32 --cnk_dmn y,32 --cnk_dmn z,6 --cnk_dmn t,1 --4 --dfl_lvl 3 amm12_restart_oce.nc new_amm12_restart_oce.nc
+mv new_amm12_restart_oce.nc amm12_restart_oce.nc
+#
+ncks --4 --no_abc --cnk_dmn=x,32 --cnk_dmn=y,32 --cnk_dmn=z,6 --cnk_dmn=t,1 --dfl_lvl 3 --cnk_plc='xpl' AMM_R12_sco_domcfg.nc new_AMM_R12_sco_domcfg.nc
+mv new_AMM_R12_sco_domcfg.nc AMM_R12_sco_domcfg.nc
+#
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn x,32 --cnk_dmn y,32 --cnk_dmn time_counter,1 --4 --dfl_lvl 3 amm12_rivers.nc new_amm12_rivers.nc
+mv new_amm12_rivers.nc amm12_rivers.nc
+#
+cd fluxes/
+mkdir new
+for f in *.nc; do ncks --no_abc --cnk_plc='xpl' --cnk_dmn x,32 --cnk_dmn y,32 --cnk_dmn t,1 --4 --dfl_lvl 3 $f new/$f; done
+cd new
+mv amm* ../
+cd ../
+rmdir new
+cd ../
+#
+cd bdydta
+mkdir new
+for f in amm12_bdyT_tra*; do ncks --no_abc --cnk_plc='xpl' --cnk_dmn x,64 --cnk_dmn y,1 --cnk_dmn=deptht,51 --cnk_dmn time_counter,1 --4 --dfl_lvl 3 $f new/$f; done
+cd new
+mv amm* ../
+cd ../
+rmdir new
+cd ../
+#
+cd ../
+}}}
+{{{
+########## ICEcmds ##########
+cd ICE_AGRIF_v4.2_RC_FULL
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,49 --cnk_dmn y,49 initice.nc new_initice.nc
+mv new_initice.nc initice.nc
+cd ../
+}}}
+{{{
+########## ISOcmds ##########
+cd ISOMIP+_v4.2_RC_FULL
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,42 --cnk_dmn nav_lev,1 --cnk_dmn time_counter,1  domain_cfg.nc new_domain_cfg.nc
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,21 --cnk_dmn t,1 isomip+_NEMO_242_geom_ocean3.nc new_isomip+_NEMO_242_geom_ocean3.nc
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,21 --cnk_dmn t,1 isomip+_NEMO_242_geom_ocean4.nc new_isomip+_NEMO_242_geom_ocean4.nc
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,21 --cnk_dmn z,10 nemo_base_COLD.nc new_nemo_base_COLD.nc
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,21 --cnk_dmn z,10 nemo_base_WARM.nc new_nemo_base_WARM.nc
+ncks --no_abc --cnk_dmn x,52 --cnk_dmn y,21 --cnk_dmn z,10 resto.nc new_resto.nc
+mv new_domain_cfg.nc domain_cfg.nc
+mv new_isomip+_NEMO_242_geom_ocean3.nc isomip+_NEMO_242_geom_ocean3.nc
+mv new_isomip+_NEMO_242_geom_ocean4.nc isomip+_NEMO_242_geom_ocean4.nc
+mv new_nemo_base_COLD.nc nemo_base_COLD.nc
+mv new_nemo_base_WARM.nc nemo_base_WARM.nc
+mv new_resto.nc resto.nc
+cd ../
+}}}
+{{{
+########## ORCA2_ICEcmds ##########
+cd ORCA2_ICE_v4.2_RC_FULL
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn lon,30 --cnk_dmn lat,30 weights_core2_orca2_bicub.nc new_weights_core2_orca2_bicub.nc
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn lon,30 --cnk_dmn lat,30 weights_core2_orca2_bilin.nc new_weights_core2_orca2_bilin.nc
+mv new_weights_core2_orca2_bilin.nc weights_core2_orca2_bilin.nc
+mv new_weights_core2_orca2_bicub.nc weights_core2_orca2_bicub.nc
+#
+# ncar_precip.15JUNE2009_fill.nc ncar_rad.15JUNE2009_fill.nc slp.15JUNE2009_fill.nc
+#     LAT LON TIME
+# q_10.15JUNE2009_fill.nc t_10.15JUNE2009_fill.nc u_10.15JUNE2009_fill.nc v_10.15JUNE2009_fill.nc
+#     lat lon time
+#
+# Note CORE forcing datasets contain some redundant variables; only keep those actually used
+#
+ncks --4 --dfl_lvl 1 --no_abc -v T_10_MOD --cnk_plc='xpl' --cnk_dmn lon,32 --cnk_dmn lat,32 --cnk_dmn time,1  t_10.15JUNE2009_fill.nc new_t_10.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v U_10_MOD --cnk_plc='xpl' --cnk_dmn lon,32 --cnk_dmn lat,32 --cnk_dmn time,1  u_10.15JUNE2009_fill.nc new_u_10.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v V_10_MOD --cnk_plc='xpl' --cnk_dmn lon,32 --cnk_dmn lat,32 --cnk_dmn time,1  v_10.15JUNE2009_fill.nc new_v_10.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v Q_10_MOD --cnk_plc='xpl' --cnk_dmn lon,32 --cnk_dmn lat,32 --cnk_dmn time,1  q_10.15JUNE2009_fill.nc new_q_10.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v LWDN_MOD,SWDN_MOD --cnk_plc='xpl' --cnk_dmn LON,32 --cnk_dmn LAT,32 --cnk_dmn time,1  ncar_rad.15JUNE2009_fill.nc new_ncar_rad.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v PRC_MOD1,SNOW --cnk_plc='xpl' --cnk_dmn LON,32 --cnk_dmn LAT,32 --cnk_dmn time,1  ncar_precip.15JUNE2009_fill.nc new_ncar_precip.15JUNE2009_fill.nc
+#
+ncks --4 --dfl_lvl 1 --no_abc -v SLP --cnk_plc='xpl' --cnk_dmn LON,32 --cnk_dmn LAT,32 --cnk_dmn TIME,1  slp.15JUNE2009_fill.nc new_slp.15JUNE2009_fill.nc
+#
+for f in new*; do ff=${f/new_}; mv $f $ff; done
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  sdw_ecwaves_orca2.nc new_sdw_ecwaves_orca2.nc
+mv new_sdw_ecwaves_orca2.nc sdw_ecwaves_orca2.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn z,4 --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  data_1m_potential_temperature_nomask.nc new_data_1m_potential_temperature_nomask.nc
+mv new_data_1m_potential_temperature_nomask.nc data_1m_potential_temperature_nomask.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn z,4 --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  data_1m_salinity_nomask.nc new_data_1m_salinity_nomask.nc
+mv new_data_1m_salinity_nomask.nc data_1m_salinity_nomask.nc
+#
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn t,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn z,4 ORCA_R2_zps_domcfg.nc new_ORCA_R2_zps_domcfg.nc
+mv new_ORCA_R2_zps_domcfg.nc ORCA_R2_zps_domcfg.nc
+#
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 int_wave_mix.nc new_int_wave_mix.nc
+mv new_int_wave_mix.nc int_wave_mix.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn z,4 --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  sali_ref_clim_monthly.nc new_sali_ref_clim_monthly.nc
+mv new_sali_ref_clim_monthly.nc sali_ref_clim_monthly.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  runoff_core_monthly.nc new_runoff_core_monthly.nc
+mv new_runoff_core_monthly.nc runoff_core_monthly.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  sst_data.nc new_sst_data.nc
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30 --cnk_dmn time_counter,1  sss_data.nc new_sss_data.nc
+mv new_sst_data.nc sst_data.nc
+mv new_sss_data.nc sss_data.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn X1,30 --cnk_dmn Y1,30 --cnk_dmn time_counter,1  subbasins.nc new_subbasins.nc
+mv new_subbasins.nc subbasins.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  slaReferenceLevel.nc new_slaReferenceLevel.nc
+mv new_slaReferenceLevel.nc slaReferenceLevel.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn z,4 resto.nc new_resto.nc
+mv new_resto.nc resto.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn d01,30 --cnk_dmn d02,30  mask_itf.nc new_mask_itf.nc
+mv new_mask_itf.nc mask_itf.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn z,4 --cnk_dmn t,1 eddy_viscosity_2D.nc new_eddy_viscosity_2D.nc
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn z,4 --cnk_dmn t,1 eddy_viscosity_3D.nc new_eddy_viscosity_3D.nc
+mv new_eddy_viscosity_2D.nc eddy_viscosity_2D.nc
+mv new_eddy_viscosity_3D.nc eddy_viscosity_3D.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn t,1 geothermal_heating.nc new_geothermal_heating.nc
+mv new_geothermal_heating.nc geothermal_heating.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn time_counter,1 K1rowdrg.nc new_K1rowdrg.nc
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn time_counter,1 M2rowdrg.nc new_M2rowdrg.nc
+mv new_K1rowdrg.nc K1rowdrg.nc
+mv new_M2rowdrg.nc M2rowdrg.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn time_counter,1 calving.nc new_calving.nc
+mv new_calving.nc calving.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn time_counter,1 chlorophyll.nc new_chlorophyll.nc
+mv new_chlorophyll.nc chlorophyll.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30  --cnk_dmn time_counter,1 --cnk_dmn z,4 assim_background_increments.nc new_assim_background_increments.nc
+mv new_assim_background_increments.nc assim_background_increments.nc
+#
+ncks --4 --no_abc --cnk_plc='xpl' --cnk_dmn x,30 --cnk_dmn y,30 ahmcoef.nc new_ahmcoef.nc
+mv new_ahmcoef.nc ahmcoef.nc
+#
+cd ../
+}}}
+{{{
+########## ORCA2_OFFcmds ##########
+cd ORCA2_OFF_v4.2_RC_FULL
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn t,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn z,4 ORCA_R2_zps_domcfg.nc new_ORCA_R2_zps_domcfg.nc
+mv new_ORCA_R2_zps_domcfg.nc ORCA_R2_zps_domcfg.nc
+#
+ncks --no_abc  --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn deptht,4 dyna_grid_T.nc new_dyna_grid_T.nc
+#
+ncks --no_abc  --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn depthu,4 dyna_grid_U.nc new_dyna_grid_U.nc
+#
+ncks --no_abc  --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn depthv,4 dyna_grid_V.nc new_dyna_grid_V.nc
+#
+ncks --no_abc  --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn depthw,4 dyna_grid_W.nc new_dyna_grid_W.nc
+#
+mv new_dyna_grid_T.nc dyna_grid_T.nc
+mv new_dyna_grid_U.nc dyna_grid_U.nc
+mv new_dyna_grid_V.nc dyna_grid_V.nc
+mv new_dyna_grid_W.nc dyna_grid_W.nc
+#
+cd ../
+}}}
+{{{
+########## SAScmds ##########
+cd SAS_v4.2_RC_FULL
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn deptht,4 sas_grid_T.nc new_sas_grid_T.nc
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn depthu,4 sas_grid_U.nc new_sas_grid_U.nc
+ncks --no_abc --cnk_plc='xpl' --cnk_dmn time_counter,1 --cnk_dmn x,60 --cnk_dmn y,50 --cnk_dmn depthv,4 sas_grid_V.nc new_sas_grid_V.nc
+mv new_sas_grid_T.nc sas_grid_T.nc
+mv new_sas_grid_U.nc sas_grid_U.nc
+mv new_sas_grid_V.nc sas_grid_V.nc
+cd ../
+}}}
+{{{
+########## WEDcmds ##########
+cd WED025_v4.2_RC_FULL
+# u10 v10 t10 precip rsds q10 slp rlds snow
+# WED025 starts in middle of January; need 20 days from then = 35 days = 280 records @ 3hourly
+for v in u10 v10 t10 precip rsds q10 slp rlds snow
+do
+ ncks --cnk_dmn longitude,64 --cnk_dmn latitude,64 ${v}_JRA_y2000.nc 20d_${v}_JRA_y2000.nc
+done
+#
+for v in u10 v10 t10 precip rsds q10 slp rlds snow
+do
+ mv 20d_${v}_JRA_y2000.nc ${v}_JRA_y2000.nc
+done
+#
+ncks --cnk_dmn xbT,50 WED025_bdyT_tra_y1999.nc new_WED025_bdyT_tra_y1999.nc
+ncks --cnk_dmn xbT,50 WED025_bdyT_tra_y2000.nc new_WED025_bdyT_tra_y2000.nc
+ncks --cnk_dmn xbU,50 WED025_bdyU_u3d_y1999.nc new_WED025_bdyU_u3d_y1999.nc
+ncks --cnk_dmn xbU,50 WED025_bdyU_u3d_y2000.nc new_WED025_bdyU_u3d_y2000.nc
+ncks --cnk_dmn xbV,44 WED025_bdyV_u3d_y1999.nc new_WED025_bdyV_u3d_y1999.nc
+ncks --cnk_dmn xbV,44 WED025_bdyV_u3d_y2000.nc new_WED025_bdyV_u3d_y2000.nc
+mv new_WED025_bdyT_tra_y1999.nc WED025_bdyT_tra_y1999.nc
+mv new_WED025_bdyT_tra_y2000.nc WED025_bdyT_tra_y2000.nc
+mv new_WED025_bdyU_u3d_y1999.nc WED025_bdyU_u3d_y1999.nc
+mv new_WED025_bdyU_u3d_y2000.nc WED025_bdyU_u3d_y2000.nc
+mv new_WED025_bdyV_u3d_y1999.nc WED025_bdyV_u3d_y1999.nc
+mv new_WED025_bdyV_u3d_y2000.nc WED025_bdyV_u3d_y2000.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyT_tra_y1999.nc new_WED025_bdyT_tra_y1999.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyT_tra_y2000.nc new_WED025_bdyT_tra_y2000.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyU_u3d_y1999.nc new_WED025_bdyU_u3d_y1999.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyU_u3d_y2000.nc new_WED025_bdyU_u3d_y2000.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyV_u3d_y1999.nc new_WED025_bdyV_u3d_y1999.nc
+ncks --cnk_dmn time_counter,1 WED025_bdyV_u3d_y2000.nc new_WED025_bdyV_u3d_y2000.nc
+mv new_WED025_bdyT_tra_y1999.nc WED025_bdyT_tra_y1999.nc
+mv new_WED025_bdyT_tra_y2000.nc WED025_bdyT_tra_y2000.nc
+mv new_WED025_bdyU_u3d_y1999.nc WED025_bdyU_u3d_y1999.nc
+mv new_WED025_bdyU_u3d_y2000.nc WED025_bdyU_u3d_y2000.nc
+mv new_WED025_bdyV_u3d_y1999.nc WED025_bdyV_u3d_y1999.nc
+mv new_WED025_bdyV_u3d_y2000.nc WED025_bdyV_u3d_y2000.nc
+#
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 domain_cfg.nc new_domain_cfg.nc
+mv new_domain_cfg.nc domain_cfg.nc
+#
+ncks --no_abc --cnk_dmn lon,64 --cnk_dmn lat,64 weights_bilin_JRA.nc new_weights_bilin_JRA.nc
+ncks --no_abc --cnk_dmn lon,64 --cnk_dmn lat,64 weights_bicubic_JRA.nc new_weights_bicubic_JRA.nc
+mv new_weights_bilin_JRA.nc weights_bilin_JRA.nc
+mv new_weights_bicubic_JRA.nc weights_bicubic_JRA.nc
+#
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 --cnk_dmn time_counter,1 WED025_icb_y1999.nc new_WED025_icb_y1999.nc
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 --cnk_dmn time_counter,1 WED025_icb_y2000.nc new_WED025_icb_y2000.nc
+mv new_WED025_icb_y1999.nc WED025_icb_y1999.nc
+mv new_WED025_icb_y2000.nc WED025_icb_y2000.nc
+#
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 --cnk_dmn time_counter,1 --cnk_dmn z,15 WED025_init_JRA_200001.nc new_WED025_init_JRA_200001.nc
+mv new_WED025_init_JRA_200001.nc WED025_init_JRA_200001.nc
+#
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 --cnk_dmn time_counter,1 chlorophyll_WED025.nc new_chlorophyll_WED025.nc
+mv new_chlorophyll_WED025.nc chlorophyll_WED025.nc
+#
+ncks --no_abc --cnk_dmn x,64 --cnk_dmn y,64 --cnk_dmn time_counter,1 isfmlt_par.nc new_isfmlt_par.nc
+mv new_isfmlt_par.nc isfmlt_par.nc
+#
+ncks --no_abc --cnk_dmn xbt,50 --cnk_dmn xbu,50 --cnk_dmn xbv,44 coordinates_bdy_WED025.nc new_coordinates_bdy_WED025.nc
+mv new_coordinates_bdy_WED025.nc coordinates_bdy_WED025.nc
+#
+cd ../
+#
+}}}
 === Documentation updates