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Users/SetupNewConfiguration (diff) – NEMO

Changes between Version 14 and Version 15 of Users/SetupNewConfiguration


Ignore:
Timestamp:
2017-03-29T19:38:12+02:00 (7 years ago)
Author:
nicolasmartin
Comment:

--

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  • Users/SetupNewConfiguration

    v14 v15  
     1= Setup a new configuration 
     2 
     3[[PageOutline(2)]] 
     4 
    15Last edition: '''[[Wikinfo(changed_ts)]]''' by '''[[Wikinfo(changed_by)]]''' 
    26 
    3 == SETUP A NEW CONFIGURATION STARTING FROM AN EXISTING ONE == 
     7== Starting from an existing one 
    48 
    59To create and compile a new configuration starting from a reference configuration (ORCA_LIM3 in the following example)[[BR]] 
    … …  
    1418[[BR]] 
    1519 
    16 == SETUP A REGIONAL CONFIGURATION USING SIREN == 
     20== Use of SIREN for a regional configuration 
    1721 
    1822This software called SIREN, allows you to set up regional configuration of NEMO.[[BR]] 
    … …  
    2630As demonstrator for a first start, a set of GLORYS files (global reanalysis on ORCA025 grid), as well as examples of namelists are available [http://prodn.idris.fr/thredds/catalog/ipsl_public/rron463/catalog.html?dataset=DatasetScanipsl_public/rron463/INPUT_SIREN.tar here].[[BR]] 
    2731 
    28 SIREN documentation: [https://forge.ipsl.jussieu.fr/nemo/doxygen/index.html# here]. [[BR]] 
     32SIREN documentation: [/doxygen/index.html# here]. [[BR]] 
    2933 
    30   
    31 Forum : Pease post your questions or comments regarding the use of SIREN in the NEMO configuration manager forum [http://forge.ipsl.jussieu.fr/nemo/discussion/forum/2 here].[[BR]] 
     34Forum : Please post your questions or comments regarding the use of SIREN in the NEMO configuration manager forum [/discussion/forum/2 here].[[BR]] 
    3235 
    3336 
    3437 
    35 == Others Pre-processing utilities == 
    36   
     38== Others Pre-processing utilities 
    3739 
    38 '''AGRIF nesting tool: '''[[BR]]  
    39    [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/AGRIF-nesting-tool How to create ] the grid coordinates, the surface forcing and the initial conditions required by each child model.[[BR]] 
     40[[PageOutline(3, , inline, unnumbered)]] 
    4041 
    41 '''Data interpolation with [http://www.mpimet.mpg.de/fileadmin/software/cdo/ cdo]:''' [[BR]] 
    42     The aim is to remap from/to a regular geographic grid to/from an other curvilinear grid, especially the ORCA one. see [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/cdo-interpolation here].[[BR]] 
     42=== AGRIF nesting tool 
     43[/wiki/Users/SetupNewConfiguration/AGRIF-nesting-tool How to create ] the grid coordinates, the surface forcing and the initial conditions required by each child model. 
    4344 
    44 '''Data compression:''' [[BR]] 
    45    for netdcf files: [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/Data-utilities-with-netcdf example] for COREII forcing files.[[BR]] 
     45=== Data interpolation with [http://www.mpimet.mpg.de/fileadmin/software/cdo/ cdo] 
     46The aim is to remap from/to a regular geographic grid to/from an other curvilinear grid, especially the ORCA one. see [/wiki/Users/SetupNewConfiguration/cdo-interpolation here]. 
    4647 
     48=== Data compression 
     49For netdcf files: [/wiki/Users/SetupNewConfiguration/Data-utilities-with-netcdf example] for COREII forcing files. 
    4750 
    48 '''Weight creation for online interpolation :'''[[BR]] 
    49    see [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/Weight-creator here] and [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/cdo-interpolation here]. [[BR]] 
     51=== Weight creation for online interpolation 
     52See [/wiki/Users/SetupNewConfiguration/Weight-creator here] and [/wiki/Users/SetupNewConfiguration/cdo-interpolation here]. 
    5053 
    51 '''Bathymetry:'''[[BR]] 
    52     [https://forge.ipsl.jussieu.fr/nemo/wiki/Users/SetupNewConfiguration/OPABAT OPABAT] is a group of Fortran and IDL routines which allows to build a bathymetry on the grid of the dynamical oceanic part, OPA.[[BR]] 
     54=== Bathymetry 
     55[/wiki/Users/SetupNewConfiguration/OPABAT OPABAT] is a group of Fortran and IDL routines which allows to build a bathymetry on the grid of the dynamical oceanic part, OPA. 
    5356 
    54 '''Data interpolation:'''[[BR]] 
    55     The aim is to remap from a regular geographic grid to an other curvilinear grid, especially the ORCA one. It will be provide by [http://sosie.sourceforge.net/ SOSIE ][[BR]] 
     57=== Data interpolation 
     58The aim is to remap from a regular geographic grid to an other curvilinear grid, especially the ORCA one. It will be provide by [http://sosie.sourceforge.net/ SOSIE] 
    5659 
    57 '''Setting up MPP configuration tool:'''[[BR]] 
    58     This Fortran based tool provides to the user information to choose the best domain decomposition. The proposed solution will be the one with an optimized number of processos in suppressing eventual useless land processors.[[BR]] 
    59         Documentation: [https://forge.ipsl.jussieu.fr/nemo/attachment/wiki/Users/SetupNewConfiguration/mpp_nc.pdf mpp_nc.pdf] 727.78 kB[[BR]] 
    60         Tar file     : [https://forge.ipsl.jussieu.fr/nemo/attachment/wiki/Users/SetupNewConfiguration/mpp_prep-1.0.tar.gz mpp_prep-1.0.tar.gz] 965.85 kB[[BR]] 
     60=== Setting up MPP configuration tool 
     61This Fortran based tool provides to the user information to choose the best domain decomposition. The proposed solution will be the one with an optimized number of processos in suppressing eventual useless land processors. 
     62* Documentation: [attachment:wiki:Users/SetupNewConfiguration:mpp_nc.pdf mpp_nc.pdf] 
     63* Tar file     : [attachment:wiki:Users/SetupNewConfiguration:mpp_prep-1.0.tar.gz mpp_prep-1.0.tar.gz] 
    6164 
    62 '''Conversion of restart files''' [[BR]] 
    63     This Fortran based tool performs light changes on restart files (NetCDF or DIMG format) to ensure their compatibility with the new IOM package in the standard version of NEMO i.e. since the tag nemo_v2 and later:[[BR]] 
    64     [https://forge.ipsl.jussieu.fr/nemo/attachment/wiki/Users/SetupNewConfiguration/Chge_Rst_files.tar Chge_Rst_files.tar] 80.00 kB[[BR]] 
     65=== Conversion of restart files 
     66This Fortran based tool performs light changes on restart files (NetCDF or DIMG format) to ensure their compatibility with the new IOM package in the standard version of NEMO i.e. since the tag nemo_v2 and later: [attachment:wiki:Users/SetupNewConfiguration:Chge_Rst_files.tar Chge_Rst_files.tar] 
    6567 
    66 '''ORCA grids generator'''[[BR]] 
    67     This Fortran based tool allows to generate an ORCA grid type: [https://forge.ipsl.jussieu.fr/nemo/attachment/wiki/Users/SetupNewConfiguration/gridgen_CECILL.tar gridgen_CECILL.tar] 290.00 kB[[BR]] 
    68  
    69  
    70  
    71  
    72  
    73  
     68=== ORCA grids generator 
     69This Fortran based tool allows to generate an ORCA grid type: [attachment:wiki:Users/SetupNewConfiguration:gridgen_CECILL.tar gridgen_CECILL.tar]