Changes between Version 42 and Version 43 of Working Groups/TOP/TOP-User Quick Guide


Ignore:
Timestamp:
2018-08-31T20:40:44+02:00 (2 years ago)
Author:
nicolasmartin
Comment:

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  • Working Groups/TOP/TOP-User Quick Guide

    v42 v43  
    124124[[BR]] 
    125125 
     126[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=13, end=26, line_numbers=0)]] 
    126127|||| &'''namtrc_run'''      !   run information || 
    127128|| nn_dttrc || Time step frequency for TOP computation (if >1 substepping is used) || 
     
    131132|| cn_trcrst_in [[BR]]cn_trcrst_indir || Suffix of tracers INPUT restart file[[BR]]Root directory for the location of INPUT restart files || 
    132133|| cn_trcrst_out[[BR]]cn_trcrst_outdir || suffix of tracers OUTPUT restart file[[BR]]Root directory for the location of OUTPUT restart files || 
     134 
     135[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=27, end=49, line_numbers=0)]] 
    133136|||| &'''namtrc'''          !   tracers definition || 
    134137|| jp_bgc || Number of passive tracers of the BGC model || 
     
    139142|| jp_dia3d, jp_dia2d || Number of 3D/2D diagnostic variables to populate dedicated array beside the direct usage of iom_put calls. || 
    140143|| sn_tracer(''##'') || Data structure to specify tracer name and metadata for the chosen BGC module. Here set initialization and Boundary conditions. See structure description after this table. || 
     144 
     145[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=56, end=64, line_numbers=0)]] 
    141146|||| &'''namtrc_dta'''      !    Initialisation from data input file || 
    142147|| sn_trcdta(##) || Data structure to read tracers Initial conditions according to sn_tracer%llinit option. See structure description after this table. || 
    143148|| rf_trfac(''##'') || Multiplicative factor for initialized tracer. If omitted default is 1.0. || 
    144149|| cn_dir || Root directory for the location of INPUT data files || 
     150 
     151[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=65, end=80, line_numbers=0)]] 
    145152|||| &'''namtrc_adv'''      !   advection scheme for passive tracer || 
    146153|| ln_trcadv_OFF || No passive tracer advection || 
     
    150157|| ln_trcadv_ubs[[BR]]nn_ubs_v || UBS scheme[[BR]]= 2 , vertical 2nd order FCT || 
    151158|| ln_trcadv_qck || QUICKEST scheme || 
     159 
     160[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=81, end=90, line_numbers=0)]] 
    152161|||| &'''namtrc_ldf'''      !   lateral diffusion scheme for passive tracer || 
    153162|| ln_trcldf_OFF || No passive tracer diffusion  || 
     
    155164|| rn_ldf_multi || Multiplier of active tracers mixing coefficient (aht)  || 
    156165|| rn_fact_lap || Equatorial enhanced zonal eddy diffusivity (laplacian only)  || 
     166 
     167[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=91, end=95, line_numbers=0)]] 
    157168|||| &'''namtrc_rad'''      !  treatment of negative concentrations || 
    158169|| ln_trcrad || Artificially correct negative concentrations (T) or not (F) || 
     170 
     171[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=96, end=103, line_numbers=0)]] 
    159172|||| &'''namtrc_dmp'''      !   passive tracer newtonian damping || 
    160173|| nn_zdmp_tr || Vertical shape of damping term[[BR]]0 : damping throughout the water column[[BR]]1 : no damping in the mixing layer (kz  criteria)[[BR]]2 : no damping in the mixed layer (rho crieria) || 
    161174|| cn_resto_tr || NetCDF filename with input damping coefficients || 
     175 
     176[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=104, end=111, line_numbers=0)]] 
    162177|||| &namtrc_ice      !    Representation of sea ice growth & melt effects || 
    163178|| nn_ice_tr || Tracer concentration in sea ice. Available options[[BR]]-1 (no vvl: identical cc in ice and ocean / vvl: cc_ice = 0)[[BR]]0 (no vvl: cc_ice = zero / vvl: cc_ice = )[[BR]]1 prescribed to a namelist value (implemented in pisces or through user definition in trcice_my_trc) || 
     179 
     180[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=112, end=124, line_numbers=0)]] 
    164181|||| &'''namtrc_trd'''      !   diagnostics on tracer trends                       ('key_trdtrc') || 
    165182|| nn_trd_trc || Time step frequency and tracers trends || 
     
    169186|| ln_trdmld_trc_instant || Diagnose trends of instantaneous (T) or mean (F) ML T/S || 
    170187|| ln_trdtrc(##) || Compute trend for nth tracer. Array of logical values. || 
     188 
     189[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=125, end=133, line_numbers=0)]] 
    171190|||| &'''namtrc_bc'''       !   Forcing data for boundary conditions || 
    172191|| sn_trcsbc(''##''), sn_trccbc(##), sn_trcobc(##) || Data structure to read tracers boundary conditions according to sn_tracer%llsbc,sn_tracer%llcbc, sn_tracer%llobc options. See structure description after this table. || 
     
    175194|| ln_rnf_ctl || Remove runoff dilution on tracers with absent river load (only without VVL) || 
    176195|| rn_bc_time || Time scaling factor for SBC and CBC data (seconds in a day) || 
     196 
     197[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=134         , line_numbers=0)]] 
    177198|||| &'''namtrc_bdy'''      !   Setup of tracer boundary conditions || 
    178199|| cn_trc_dflt || Open Boundary Condition applied by default to all tracers || 
    179200|| cn_trc || Boundary conditions used for tracers with data files (selected in namtrc using sn_tracer%llobc) || 
    180201|| nn_trcdmp_bdy || Use damping timescales defined in nambdy of namelist[[BR]]0 : NO damping of tracers at open boundaries[[BR]]1 : Only for tracers forced with external data[[BR]]2 : Damping applied to all tracers || 
     202 
     203[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_top_ref, start=50, end=55, line_numbers=0)]] 
    181204|||| &'''namage'''         !   Water Age module || 
    182205|| rn_age_depth || Depth over which age tracer reset to zero || 
     
    234257Here below the description of namelist_trc_ref used to handle Carbon tracers modules, namely CFC and C14. 
    235258 
     259source:/NEMO/trunk/cfgs/SHARED/namelist_trc_ref 
     260[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_trc_ref, start=6, end=14, line_numbers=0)]] 
    236261|||| &'''namcfc'''     !   CFC || 
    237262|| ndate_beg || Initial calendar date (yymmdd) for CFC || 
    238263|| nyear_res ||Restoring time constant (year) || 
    239264|| clname || Name of formatted file with annual hemisperic CFCs concentration in the atmosphere (ppt) || 
     265 
     266[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_trc_ref, start=16, end=23, line_numbers=0)]] 
    240267|||| &'''namc14_typ'''     !  C14 - type of C14 tracer, default values of C14/C and pco2 || 
    241268|| kc14typ || Type of C14 tracer (0=equilibrium; 1=bomb transient; 2=past transient) || 
     
    243270|| pco2at || Default value for atmospheric pcO2 [atm] (used for equil run) || 
    244271|| rc14init || Default value for initialization of ocean C14/C (when no restart) || 
     272 
     273[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_trc_ref, start=25, end=31, line_numbers=0)]] 
    245274|||| &'''namc14_sbc'''     !  C14 - surface BC || 
    246275|| ln_chemh || Use (T) or not (F) Chemical enhancement in piston velocity || 
    247276|| xkwind || Coefficient for gas exchange velocity || 
    248277|| xdicsur || Reference DIC surface concentration (mol/m3) || 
     278 
     279[[IncludeSource(/NEMO/trunk/cfgs/SHARED/namelist_trc_ref, start=33, end=44, line_numbers=0)]] 
    249280|||| &'''namc14_fcg'''     !  files & dates || 
    250281|| cfileco2 || Name of formatted file with atmospheric co2 - Bomb ||