Changes between Version 49 and Version 50 of user/flavoni/libIGCM/iom_put

Timestamp:

2009-11-27T15:24:59+01:00 (14 years ago)

Author:

flavoni

Comment:

--

user/flavoni/libIGCM/iom_put

@@ -19 +19 @@
 [[BR]]
 
- '''today 30/10/2009 if you download ./model NEMO_IGCM you can't use iom_put'''. [[BR]]
+27/11/2009: downloading NEMO_DEV you have iomput by default (tag v3_2)
 
-=== If you want activate iom_put ===
+=== By default iom_put is activated ===
  
- If you want to activate iom_put you have to:
-
- * download model NEMO_IGCM: [[BR]]
- {{{
- cd modipsl/util 
- ./model NEMO_IGCM 
- }}}
-
-
- * comment lines in dommsk: [[BR]]
- {{{
-        ij0 = 115   ;   ij1 = 115 
-         ii0 = 145   ;   ii1 = 146   ;   fmask( mi0(ii0):mi1(ii1) , mj0(ij0):mj1(ij1) , 1:jpk ) = 4.0e0 
-         ij0 = 116   ;   ij1 = 116 
-         ii0 = 145   ;   ii1 = 146   ;   fmask( mi0(ii0):mi1(ii1) , mj0(ij0):mj1(ij1) , 1:jpk ) = 4.0e0 
-  }}}
-
- * put in namelist
- {{{
-  rn_bfri1    =    0.e-4 
- }}}
-
-  * Add key in modipsl/config/ORCA2_LIM/scripts/BB_make.ldef
+  *  key in modipsl/config/ORCA2_LIM/scripts/BB_make.ldef
  {{{
  key_iomput
  }}} 
 
- * Do an ins_make : [[BR]]
- {{{
- ./modipsl/util/ins_make
- }}}
- 
- * Go in ORCA2_LIM directory : [[BR]]
- {{{
- cd modipsl/config/ORCA2_LIM
- }}}
 
- * Compile : [[BR]]
- {{{
- gmake
- }}}
+ * namelist in IGCM00 is the same that namelist in EXP00 (nothing to change if you want to use iodef.xml by default, like an example)
 
- * you can copy modified files (opa9.driver, opa9.card, lim2.card, POST directory) that you find in: [[BR]]
- {{{
- brodie: /workdir/rech/eee/reee605/LIBIGCM_NEMO/LIKE-COUPLED/test_claire/  
- mercure: /work/cont003/flavoni/LIBIGCM_NEMO/LIKE-COUPLED/test_iom_lib14_rev1661_WR/modipsl/config/ORCA2_LIM/IGCM_lim14_io/COMP  
- }}}
+ * iodef.xml in IGCM00 is the same that namelist in EXP00 (nothing to change if you want to use iodef.xml by default, like an example)
 
- * Change in opa9.card: [[BR]]
- {{{
- io_xml='''y'''  
- }}}
- 
-----
-
- === My job: modifications done till 30/10/2009 to prepare files for using iom_put: ===
-
- Modifications done till now were necessary if not it was not possible to have good file for iodef.xml
-
- 1. Changed revision for nemo in modispl/util/mod.def in NEMO_IGCM:
-
- #-H- NEMO_IGCM  NEMO trunk revision '''1661''' [[BR]]  (revision without bottom friction bug)
- 
-
- in '''lim2.card'''  
-
- 2. changed PREFIX name for output .nc file  [[BR]]
- [OutputFiles]  [[BR]]
- List= ('''${PREFIX_NEMO}'''_icemod.nc, ${R_OUT_ICE_NWRITE}/${PREFIX}_${WF1}_icemod.nc, Post_1M_icemod)
- 
- 3. removed deptht (for monitoring, no good to do ncrcat in 3 dimensions for ice)   [[BR]]
- [Post_1M_icemod] [[BR]]
- GatherWithInternal = (nav_lon, nav_lat, time_counter)
-
- 4. removed ileadfra '''for the moment'''  [[BR]]
- TimeSeriesVars = (iicethic, isnowthi, iicevelu, iicevelv)
-
- NOTE: for this moment ileadfra removed because in iomdef.xml there are new variables' names (like IPPC requested) and ileadfra there is no more in output from nemo's code, waiting for that nemo put in output 1-soicecov (=ileadfra)
+ * To have post traitement different by default you need to create POST directory in IGCM00 [[BR]]
 
 
- in '''opa9.card'''
-
- 5. changed PREFIX name for output .nc file  [[BR]]
- [OutputFiles]  [[BR]]
- List= ('''${PREFIX_NEMO}''''_grid_T.nc, ${R_OUT_OCE_NWRITE}/${PREFIX}_${WF1}_grid_T.nc, Post_1M_grid_T),\ [[BR]]
- ('''${PREFIX_NEMO}'''_grid_U.nc, ${R_OUT_OCE_NWRITE}/${PREFIX}_${WF1}_grid_U.nc, Post_1M_grid_U),\ [BR]]
- ('''${PREFIX_NEMO}'''_grid_V.nc, ${R_OUT_OCE_NWRITE}/${PREFIX}_${WF1}_grid_V.nc, Post_1M_grid_V),\ [[BR]]
- ('''${PREFIX_NEMO}'''_grid_W.nc, ${R_OUT_OCE_NWRITE}/${PREFIX}_${WF1}_grid_W.nc, Post_1M_grid_W),\ [[BR]]
-
- (in opa9.driver ${PREFIX_NEMO} is:  [[BR]]
- ${PREFIX_NEMO}=${PREFIX}_{WF1}  if we use iomput [[BR]]
- ${PREFIX_NEMO}=${PREFIX_NWRITE}_${DATE_OPA} if not )   [[BR]]
-
- in '''opa9.driver''' 
-
- 6. possibility to use io_server (but not testing now) [[BR]]
- ##--Variables used for XMLIO_SERVER configuration file  [[BR]]
- # using_server: .TRUE.(.FALSE.) to use(bypass) the io_server  [[BR]]
- PAT_SERVER=$( supergrep using_server ${SUBMIT_DIR}/PARAM/xmlio_server.def )  [[BR]]
-
-
- 7. Added output_frequency in days, if not xml file is not correct  [[BR]]
- (( output_frequency_oce = $WriteFrequencyInDays * 86400 )) [[BR]]
- (( output_frequency_ice = $WriteFrequencyInDays * 86400 )) 
-
- 8. replaced output filenames in xml file [[BR]]
- sed -e "s/<file_name_grid_T>/ \"${PREFIX_NEMO}_grid_T.nc\"/" \ [[BR]]
- -e "s/<file_name_grid_U>/ \"${PREFIX_NEMO}_grid_U.nc\"/" \ [[BR]]
- -e "s/<file_name_grid_V>/ \"${PREFIX_NEMO}_grid_V.nc\"/" \ [[BR]]
- -e "s/<file_name_grid_W>/ \"${PREFIX_NEMO}_grid_W.nc\"/" \ [[BR]]
- -e "s/<file_name_icemod>/ \"${PREFIX_NEMO}_icemod.nc\"/" \ [[BR]]
- -e "s/<output_frequency_oce>/ \"${output_frequency_oce}\"/g" \ [[BR]]
- -e "s/<output_frequency_ice>/ \"${output_frequency_ice}\"/g" \ [[BR]]
- iodef.xml > iodef.xml.tmp 
-
- IGCM_sys_Mv iodef.xml.tmp iodef.xml [[BR]]
-
-
- 9. determine number of day(s) in WriteFrequency :  [[BR]]
-   case ${config_UserChoices_OCE_WriteFrquency} in
-            1Y|1y)
-                (( WriteFrequencyInDays = $( IGCM_date_DaysInYear $year ) )) ;;
-            1M|1m)
-                (( WriteFrequencyInDays = $( IGCM_date_DaysInMonth $year $month ) )) ;;
-            5D|5d)
-                (( WriteFrequencyInDays=5 )) ;;
-            1D|1d)
-                (( WriteFrequencyInDays=1 )) ;;
-            *)
-                IGCM_debug_Exit "IGCM_config_OCE_WriteFrquency " ${config_UserChoices_OCE_WriteFrquency} " invalid write frquency length : choose in 1Y, 1M, 5D, 1D."
-                IGCM_debug_Verif_Exit ;;
-   esac
-
- 10. Created POST directory under $SUBMIT_DIR:  [[BR]]
- In POST directrory there are:   [[BR]]
+ Create POST directory under $SUBMIT_DIR:  [[BR]]
+ In POST directrory you can put:   [[BR]]
  monitoring01_lim2_ORCA2.cfg  [[BR]]
  monitoring01_opa9_ORCA2.cfg  [[BR]]
   
- In monitoring01_lim2_ORCA2.cfg I removed ileadfra because now this variable does not exists, and if I don't use "dynamic monitoring" I can't have ICE monitoring (monitoring don't create monitoring images if there is one or more variables that does not exist). 
-
+ (In monitoring01_lim2_ORCA2.cfg I removed ileadfra because now this variable does not exists) 
  see https://forge.ipsl.jussieu.fr/nemo/wiki/private/libIGCM/postprocessingpage
 
@@ -168 +47 @@
  '''open problems''':
  1. Don't have ATLAS for "ice cover": because new variable is named soicecov and in atlas is written ileadfra
- 2. to do: calcul for 2 frequencies (waiting for a new iodef.xml)
-
-
-=== Tests on vargas ===
-
- * Directory :
- 1- /workgpfs/rech/psl/rpsl003/VARGAS/NEMO/CLIM_IOM/modipsl/config/ORCA2_LIM
- 2- /workgpfs/rech/psl/rpsl003/VARGAS/NEMO/CLIM_IOM2/modipsl/config/ORCA2_LIM
- * Main idea : 
-  * use xml.def to list fields and file for differents types of output (1M, 1D, 1Y, ...)
-    * Usefull for grid_[TUVW] and icemod files
-    * old fashion for diaptr
-  * use -1 for 1Y length simulation to have monthly (variable length) outputs
-   * OK for xml files
-   * nead adjustment for old fashion (diaptr) files
- * Modifications :
-  * BB_make.ldef (key_iomput added)
-  * Sources : commented lines in dommsk
-  * COMP directory :
-   * opa9.driver :
-     * use Vxx_enable variable to set information in xml.def file (1M enable for example)
-   * opa9.card :
-     * add a list of possible files : ORCA2_1m_grid_T.nc ...
-     * add a Patch for time counter (to rename the first time axis time_counter, t_ave_01month allowable, works when no tule_counter rename is required)
-       * See : /workgpfs/rech/psl/rpsl003/VARGAS/NEMO/CLIM_IOM/modipsl/libIGCM/libIGCM_post/IGCM_Patch_20091030_histcom_time_axis.ksh
-     * delete sophtldf variable in monitoring list
-   * lim2.card :
-     * add a list of possible files : ORCA2_1m_icemod.nc ...
-     * add a Patch for time counter (to rename the first time axis time_counter, t_ave_01month allowable, works when no tule_counter rename is required)
-     * delete deptht variable in gather list
-  * PARAM directory :
-   * add iodef.xml
-   * xmlio_server.def
-  * POST directory :
-   * add monitoring01_lim2.cfg file :
-    * a copy (take care : without _ORCA2) of /home/rech/psl/rpsl035/atlas/monitoring01_lim2_ORCA2.cfg
-    * without ileadfra_south and ileadfra_north lines
-
- * 4 tests : All tests have been done with 1Y atlas/monitoring :
-  * Modifications in config.card for all tests :
- {{{
-JobNumProcTot=16
-RebuildFrequency=1Y
-DateEnd=2002-12-31
-TimeSeriesFrequency=1Y
-SeasonalFrequency=1Y
-WriteFrequency="1M 1D"
-WriteFrequency="1M 1D"
-}}}
-  * Name of tests
-
- || PeriodLength || 1M || 1Y ||
- || 360d || NLIO5 / CLIM_IOM/.../IGCM360MO '''OK''' || NLIO7 / CLIM_IOM/.../IGCM360 '''OK''' ||
- || leap || NLIO20 /IGCM365MO6 '''KO monitoring''' || NLIO15 / IGCM3656 '''KO impossible for diaptr''' ||
- || leap || NLIOD5 / CLIM_IOM2/.../IGCM365MO2 '''OK''' || NLIOD4 '''KO impossible yet''' false for xml files ||
-
-==== NLIO5 ====
- * Status : OK
- * Directory 1
- * Modifications in IGCM360MO/config.card
- {{{
-JobName=NLIO5
-PeriodLength=1M
-}}}
- * Issues already known :
-   * No mask in atlas for continents
-   * ileadfra maps empty
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIO5
-
-==== NLIO7 ====
- * Status : OK
- * Directory 1
- * Modifications in IGCM360/config.card
- {{{
-JobName=NLIO7
-}}}
- * Issues already known :
-   * No mask in atlas for continents
-   * ileadfra maps empty
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIO7
-
-==== NLIO15 ====
- * Status : KO
- * Directory 1
- * Modifications in IGCM3656/config.card
- {{{
-JobName=NLIO15
-CalendarType=leap
-}}}
- * Issues :
-  * diaptr not saved name : NLIO15_CU*_20010101_20011231_diaptr_0000.nc
-   * ZNL atlas empty
-   * Monitoring : only ICE variables, only 1 year, 
-   * will work better when diaptr files will exist
- * Issues already known :
-   * No mask in atlas for continents
-   * ileadfra maps empty
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIO15
-
-==== NLIO20 ====
- * Status : KO
- * Directory 1
- * Modifications in IGCM365MO6/config.card
- {{{
-JobName=NLIO20
-CalendarType=leap
-PeriodLength=1M
-}}}
- * Issues :
-    * Monitoring : only 1Y for some variables, 2Y for others. ?????
- * Issues already known :
-   * No mask in atlas for continents
-   * ileadfra maps empty
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIO20
-
-
-==== NLIOD4 ====
- * Status : KO
- * Directory 2  ..../NEMO/CLIM_IOM2/modipsl/...
- * libIGCM 195
- * Modifications in IGCM3654/COMP/opa9.driver
- * Modifications in IGCM3654/config.card
- {{{
-JobName=NLIOD4
-CalendarType=leap
-}}}
- * Issues :
-    * Monitoring KO :
-      * 22 values in Analyse/TS_MO/* files
-      * nb second per month (instead of -1) for diaptr and xml files : grid_[TUVW] and icemod
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIOD4
-
-==== NLIOD5 ====
- * Status : OK
- * Directory 2  ..../NEMO/CLIM_IOM2/modipsl/...
- * libIGCM 195
- * Modifications in IGCM3654/COMP/opa9.driver
- * Modifications in IGCM3654/config.card
- {{{
-JobName=NLIOD5
-CalendarType=leap
-PeriodLength=1M
-}}}
- * Issues :
-    * Monitoring OK :
-      * nb second per month (instead of -1) for diaptr and xml files : grid_[TUVW] and icemod
-      * Patch OK
- * Issues already known :
-   * No mask in atlas for continents
-   * ileadfra maps empty
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NLIOD5
-
-
-==== Tests without iomput ====
-
-=====  leap calendar =====
-
- * NL365 with 1M Period Length 
- * To verify the monitoring produced without iomput.
- * Sources : /workgpfs/rech/psl/rpsl003/VARGAS/NEMO/CLIM/modipsl/config/ORCA2_LIM/NL365 
- * See : http://dodsp.idris.fr/rpsl003/ORCA2_LIM2/NL365
- * Same problem on some variables. Only the first period of monitoring is shown.
-
-=====  360d calendar =====
-
- * with and without ln_mskland, to verify monitoring
- * NL360M (with ln_mskland=.true.)
- * CLIMV16 (with ln_msklnd=.false.) 
-
-==== Proposition 1 ====
-
-Add a directory IGCM01 on svn with key_iomput activated and with this files COMP, PARAM, POST files here : https://forge.ipsl.jussieu.fr/nemo/browser/branches/libIGCM/ORCA2_LIM
-
-==== Proposition 2 ====
-
-Organisation used for IPSLCM5_v2 configuration :
- * Use same directory with this modifications :
-  * Add a README file to explain how to switch to noiomput
-  * Copy opa9.card/opa9.driver lim2.card xxx.noiomput
-  * Adapt opa9.cardopa9.driver lim2.card to iomput
-
-=== Tests in coupled model IPSLCM5 ===
-
-More information : http://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM5iomputNEMO