Changes between Initial Version and Version 1 of user/flavoni/libIGCM_v3.4

Timestamp:

2013-03-11T10:25:29+01:00 (11 years ago)

Author:

flavoni

Comment:

--

user/flavoni/libIGCM_v3.4

@@ +1 @@
+[[TOC(heading=Using libIGCM library with ORCA2_LIM nemo_v3_4, depth=2, libIGCM/setupsimupage, libIGCM/change_BC, libIGCM/postprocessingpage, libIGCM/postalreadyrunpage, libIGCM_nemo_v_3_4/parallelpage_3_4, libIGCM/common_account, libIGCM/suggestpage, libIGCM/appendixpage )]]
+
+= '''Using libIGCM library with ORCA2_LIM for nemo_v3_4''' =
+== Purposes ==
+ * Document the using of Libigcm for NEMO version 3_4, in configuration ORCA2_LIM
+
+ * Official documentation of Libigcm is :
+
+  http://forge.ipsl.jussieu.fr/libigcm/wiki/WikiStart
+
+== Quick start guide : downloading '''nemo_3_4''' ==
+  downloading NEMO v3_4 default configuration is: [[BR]]climatological run, with bulk core forcing, focring files COREII, [[BR]]with calendar type noleap [[BR]]and ocean output frequency 1Y,1M,5D,1D, ice output frequency 5D, [[BR]]with iom_put, (with an example of iodef.xml file), [[BR]]without MONITORING, and ATLAS.
+
+ * Create and go into working directory : [[BR]]
+{{{
+ mkdir TRY ; cd TRY
+}}}
+ * Extract NEMOGCM : (version 3_4 or 3_4_1)[[BR]]
+{{{
+ svn co http://forge.ipsl.jussieu.fr/nemo/svn/tags/nemo_v3_4/NEMOGCM
+
+}}}
+{{{
+ svn co http://forge.ipsl.jussieu.fr/nemo/svn/tags/nemo_v3_4_1/NEMOGCM
+}}}
+
+ * Choose and compile configuration (for example if you run ORCA2_LIM configuration on "brodie" machine at idris) : [[BR]]
+{{{
+ cd NEMOGCM/CONFIG
+ ./makenemo -m x3750_ADA -n ORCA2_LIM
+
+   (executable is created in ORCA2_LIM/BLD/bin directory)
+}}}
+
+  Using ./makenemo -h to see help ( to see list of compilers availables, to see options,...)
+
+ * Create PARAM directory for ORCA2_LIM configuration : [[BR]]
+{{{
+ cp -R ORCA2_LIM/EXP00 ORCA2_LIM/IGCM00/PARAM
+}}}
+
+ * Download Libigcm in EXTERNAL directory : [[BR]]
+{{{
+ cd ../EXTERNAL
+ svn co http://forge.ipsl.jussieu.fr/libigcm/svn/tags/libIGCM_v1_9 libIGCM
+ svn co http://forge.ipsl.jussieu.fr/igcmg/svn/modipsl/trunk/util
+}}}
+
+ * Change PATH in ins_job script : [[BR]]
+{{{
+ vi util/ins_job ; line 106
+ replace  for i in $(find ${d_n}/.. -name ${F_CFG} -print)
+ by       for i in $(find ${d_n}/../.. -name ${F_CFG} -print)
+}}}
+
+ * Create bin in EXTERNAL directory, and create link to nemo.exe : [[BR]]
+{{{
+ mkdir bin 
+ cd bin 
+ ln -s ../../CONFIG/ORCA2_LIM/BLD/bin/nemo.exe nemo.exe
+ (because libIGCM looks for executable in ${MODIPSL}/bin ; in our case ${MODIPSL}=EXTERNAL/)
+}}}
+
+Editing at this point NEMOGCM/CONFIG/ORCA2_LIM/IGCM00/config.card [[BR]]Editing at this point NEMOGCM/CONFIG/ORCA2_LIM/IGCM00/COMP/opa9.card [[BR]]Editing at this point NEMOGCM/CONFIG/ORCA2_LIM/IGCM00/COMP/lim2.card [[BR]]see : [https://forge.ipsl.jussieu.fr/nemo/wiki/libIGCM/setupsimupage setupsimupage]
+
+ * Submit Job : [[BR]]
+{{{
+ ./util/ins_job
+ cd ../CONFIG/ORCA2_LIM/IGCM00 
+ qsub Job_Name
+}}}
+
+And also see useful remarks: [https://forge.ipsl.jussieu.fr/nemo/wiki/libIGCM/suggestpage suggestpage]
+
+If you want to switch from climatological to interannual see: [https://forge.ipsl.jussieu.fr/nemo/wiki/libIGCM/change_BC change_BC]
+
+  Simona Flavoni last update: [[Timestamp]]