1 | #!/bin/ksh |
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2 | |
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3 | # $Date: 2010/06/25 19:03:52 $ |
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4 | # $Author: ssipsl $ |
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5 | # $Revision: 1.13 $ |
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6 | # IPSL (2006) |
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7 | # This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC |
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8 | |
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9 | #D--------------------------------------------------------------------== |
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10 | #D--------------------------------------------------------------------== |
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11 | #D- |
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12 | #D- Job to launch FLUXNET spinup simulations |
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13 | #D- |
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14 | #D--------------------------------------------------------------------== |
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15 | #D--------------------------------------------------------------------== |
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16 | #D- |
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17 | # Job inspired from Sönke Zaehle "site_new.def" job |
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18 | # ################################################# |
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19 | |
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20 | |
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21 | |
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22 | MODIPSL=::modipsl:: |
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23 | libIGCM=${MODIPSL}/libIGCM |
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24 | |
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25 | # All SubJobs in SPINUP in ONE OR MORE YEARS run (must be used with libIGCM branches/AllPostFred). |
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26 | |
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27 | |
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28 | |
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29 | #D--------------------------------------------------------------------== |
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30 | #D- -1. User modification place |
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31 | #D--------------------------------------------------------------------== |
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32 | |
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33 | #D- Increased verbosity (1, 2, 3) |
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34 | #Verbosity=3 |
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35 | |
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36 | #D- |
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37 | # -------------------------------------------------------------------- |
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38 | #D- ! Optionnal features /!\ Use with care ! |
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39 | # -------------------------------------------------------------------- |
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40 | |
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41 | #D- Low level debug : to bypass lib test checks and stack construction |
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42 | #D- Default=true |
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43 | DEBUG_debug=false |
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44 | |
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45 | #D- Set DEBUG_sys to false to disable output calls of function |
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46 | #D- Default=true |
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47 | #DEBUG_sys=false |
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48 | |
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49 | #D- Turn in dry run mode ? (0,1,2,3) |
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50 | #D- Default=0 |
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51 | #DRYRUN=3 |
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52 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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53 | # ------------------------------------------------------------------------------------- |
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54 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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55 | # | | Cp/Exe param files | | Chmod | | |
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56 | # | | Qsub | | | | |
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57 | # ------------------------------------------------------------------------------------- |
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58 | # | 0 | yes | yes | yes | yes | |
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59 | # ------------------------------------------------------------------------------------- |
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60 | # | 1 | yes | yes | yes | no | |
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61 | # ------------------------------------------------------------------------------------- |
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62 | # | 2 | yes | yes | no | no | |
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63 | # ------------------------------------------------------------------------------------- |
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64 | # | 3 | yes | no | no | no | |
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65 | # ------------------------------------------------------------------------------------- |
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66 | |
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67 | |
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68 | #D- |
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69 | #D--------------------------------------------------------------------== |
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70 | #D- 0. System Environment |
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71 | #D- - Define variables for Number of processors |
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72 | #D- - Define MPI variables |
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73 | #D- - Define batch scheduler variables |
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74 | #D- - Source IGCM Library |
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75 | #D- - Get RESOLution in .resol file (temporary) |
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76 | #D--------------------------------------------------------------------== |
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77 | |
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78 | #D--------------------------------------------------------------------== |
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79 | |
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80 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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81 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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82 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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83 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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84 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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85 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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86 | #------- |
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87 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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88 | |
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89 | |
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90 | #set -vx |
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91 | R_BC=${R_IN}/BC |
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92 | |
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93 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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94 | |
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95 | . ${SUBMIT_DIR}/fluxnet.ksh |
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96 | |
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97 | FLUXNET_initialize |
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98 | |
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99 | function correct_duree |
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100 | { |
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101 | # Ths function compute the nearest multiple of dyear near duree |
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102 | typeset duree dyear |
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103 | duree=$1 |
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104 | dyear=$2 |
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105 | if [ $(( duree % dyear )) -gt 0 ] ; then |
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106 | echo $(( ( duree / dyear + 1 ) * dyear )) |
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107 | else |
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108 | echo ${duree} |
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109 | fi |
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110 | } |
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111 | |
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112 | # Path for all skeleton SubJob scripts to SPINUP directory |
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113 | Skeleton_Path=$( cd ../; pwd ) |
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114 | |
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115 | isite=1 |
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116 | index=0 |
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117 | echo ${isite} ${NumSites} |
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118 | while [ ${isite} -le ${NumSites} ] ; do |
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119 | |
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120 | site=${fluxnet_FLUXNET_Sites[$index]} |
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121 | echo " ------------------------" |
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122 | echo " SPINUP for Site : ${site}" |
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123 | |
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124 | DATE0_YEAR=${fluxnet_FLUXNET_Sites[ $(( index + ColumnYear )) ]} |
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125 | TIME_YEAR=${fluxnet_FLUXNET_Sites[ $(( index + ColumnLength )) ]} |
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126 | |
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127 | ####################################################### |
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128 | # Script internal settings |
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129 | # nothing to be modified below this line |
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130 | ######################################################ä |
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131 | |
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132 | # Copy the SPINUP directory |
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133 | SubJobName=${site}${config_UserChoices_JobName} |
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134 | New_SUBMIT_DIR=${SUBMIT_DIR}/${SubJobName} |
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135 | IGCM_sys_Cp -Rp ../SPINUP ${New_SUBMIT_DIR} |
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136 | # ls -la ${New_SUBMIT_DIR} |
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137 | # cat ${New_SUBMIT_DIR}/config.card |
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138 | # echo "---" |
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139 | |
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140 | # Install this directory |
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141 | # modifications on config.card |
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142 | MyJobName=${config_UserChoices_JobName} |
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143 | IGCM_card_DefineVariableFromOption ${New_SUBMIT_DIR}/config.card UserChoices JobName |
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144 | OldJobName=${config_UserChoices_JobName} |
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145 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices JobName ${SubJobName} |
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146 | config_UserChoices_JobName=${MyJobName} |
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147 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card UserChoices TagName |
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148 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices TagName ${config_UserChoices_TagName} |
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149 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices CalendarType ${config_UserChoices_CalendarType} |
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150 | |
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151 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices JobClass ${config_UserChoices_JobClass} |
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152 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices JobNumProcTot ${config_UserChoices_JobNumProcTot} |
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153 | sed -e "s/^JobRunOptions=.*/JobRunOptions=\'${config_UserChoices_JobRunOptions}\'/" ${New_SUBMIT_DIR}/config.card > temp.card |
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154 | IGCM_sys_Mv temp.card ${New_SUBMIT_DIR}/config.card |
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155 | |
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156 | # Give path for all skeleton SubJob scripts to SPINUP directory |
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157 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices SubJobPath ${Skeleton_Path} |
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158 | |
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159 | # All SubJobs in SPINUP in one or more years (must be used with libIGCM branches/AllPostFred). |
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160 | # It is the length of the forcing file. |
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161 | if [ X"${config_UserChoices_CalendarType}" = X"360d" ] ; then |
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162 | This_Job_DateEnd=$(( DATE0_YEAR + TIME_YEAR - 1 ))1230 |
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163 | This_Job_HumanDateEnd=$(( DATE0_YEAR + TIME_YEAR - 1 ))-12-30 |
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164 | else |
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165 | This_Job_DateEnd=$(( DATE0_YEAR + TIME_YEAR - 1 ))1231 |
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166 | This_Job_HumanDateEnd=$(( DATE0_YEAR + TIME_YEAR - 1 ))-12-31 |
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167 | fi |
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168 | |
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169 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices DateBegin ${DATE0_YEAR}-01-01 |
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170 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices PeriodLength ${TIME_YEAR}Y |
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171 | |
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172 | # DateEnd is defined by SpinUp job itself (it will be modified in config.card). |
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173 | # but to get all SpinUp Job loops, we have to add at least a number of years greater |
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174 | # than those that will be modified in config.card. Default is 150.00.00 years more for SpinUp. |
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175 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices DateEnd $(( DATE0_YEAR + 150 ))-01-01 |
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176 | |
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177 | # Infinit SPINUP Job : |
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178 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card UserChoices PeriodNb 99999 |
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179 | |
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180 | # SRF section : first restart and post-treatments |
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181 | typeset option |
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182 | for option in ${config_SRF[*]} ; do |
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183 | eval value=\${config_SRF_${option}} |
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184 | eval echo ${option} ${value} |
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185 | if [ X${value} != X ] ; then |
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186 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card SRF ${option} \${config_SRF_${option}} |
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187 | fi |
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188 | done |
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189 | if [ X"${fluxnet_UserChoices_ok_stomate}" = "Xy" ] ; then |
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190 | for option in ${config_SBG[*]} ; do |
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191 | eval value=\${config_SBG_${option}} |
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192 | eval echo ${option} ${value} |
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193 | if [ X${value} != X ] ; then |
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194 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card SBG ${option} \${config_SBG_${option}} |
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195 | fi |
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196 | done |
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197 | fi |
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198 | |
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199 | # modifications on spinup.card |
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200 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card SubJobForcingFile List "(${fluxnet_FLUXNET_FluxnetPath}/${fluxnet_FLUXNET_Sites[$(( index + ColumnFilename ))]}, forcing_file.nc)" |
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201 | |
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202 | typeset option |
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203 | for option in ${fluxnet_UserChoices[*]} ; do |
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204 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices ${option} \${fluxnet_UserChoices_${option}} |
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205 | done |
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206 | # No routing for FLUXNET |
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207 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices ok_routing n |
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208 | |
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209 | # Max levels for FLUXNET |
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210 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices sechiba_LEVEL 10 |
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211 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices stomate_LEVEL 10 |
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212 | |
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213 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices DRIVER_NORESTART y |
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214 | |
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215 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_nostomate $( correct_duree ${fluxnet_SPINUP_duree_nostomate} ${TIME_YEAR} ) |
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216 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_inistomate $( correct_duree ${fluxnet_SPINUP_duree_inistomate} ${TIME_YEAR} ) |
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217 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_offlineini $( correct_duree ${fluxnet_SPINUP_duree_offlineini} ${TIME_YEAR} ) |
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218 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices n_iter ${fluxnet_SPINUP_n_iter} |
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219 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_sechiba $( correct_duree ${fluxnet_SPINUP_duree_sechiba} ${TIME_YEAR} ) |
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220 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_stomate $( correct_duree ${fluxnet_SPINUP_duree_stomate} ${TIME_YEAR} ) |
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221 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_carbonsol $( correct_duree ${fluxnet_SPINUP_duree_carbonsol} ${TIME_YEAR} ) |
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222 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices duree_final $( correct_duree ${fluxnet_SPINUP_duree_final} ${TIME_YEAR} ) |
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223 | |
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224 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices BoundaryFilesListNonDel y |
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225 | |
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226 | # TimeSeries : ALMAOUTPUT for SECHIBA |
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227 | typeset option |
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228 | for option in ${config_SubJobPost[*]} ; do |
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229 | eval value=\${config_SubJobPost_${option}} |
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230 | eval echo ${option} ${value} |
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231 | if [ X${value} != X ] ; then |
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232 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card SubJobPost ${option} \${config_SubJobPost_${option}} |
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233 | fi |
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234 | done |
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235 | # eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card SRF TimeSeriesFrequency ${TIME_YEAR}Y |
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236 | # eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/config.card SRF TimeSeriesFrequency NONE |
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237 | set -A sechiba_TimeSeriesVars2D -- nobiofrac SWnet LWnet Qh Qle Qg Qf DelSurfHeat DelColdCont Snowf Rainf Evap \ |
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238 | Qs Qsb Qsm DelSoilMoist DelSWE DelIntercept AvgSurfT RadT Albedo SWE SoilMoist SoilWet SoilTemp PotEvap \ |
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239 | ECanop TVeg ESoil RootMoist SubSnow ACond SnowFrac SAlbedo SnowDepth dis |
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240 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card SubJobPost sechiba_TimeSeriesVars2D "("$( echo ${sechiba_TimeSeriesVars2D[@]} | sed -e "s/ /,/g" )")" |
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241 | set -A sechiba_TimeSeriesVars3D -- vegetfrac maxvegetfrac GPP |
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242 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card SubJobPost sechiba_TimeSeriesVars3D "("$( echo ${sechiba_TimeSeriesVars3D[@]} | sed -e "s/ /,/g" )")" |
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243 | |
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244 | # modifications on Job script |
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245 | rm ${New_SUBMIT_DIR}/Job_${OldJobName} |
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246 | IGCM_sys_Cp ${SUBMIT_DIR}/Job_${MyJobName} ${New_SUBMIT_DIR}/Job_${SubJobName} |
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247 | |
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248 | sed -e "s/ ${MyJobName}/ ${SubJobName}/" \ |
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249 | -e "s/Script_Output_${MyJobName}/Script_Output_${SubJobName}/" \ |
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250 | ${New_SUBMIT_DIR}/Job_${SubJobName} > ${New_SUBMIT_DIR}/Job_${SubJobName}_ |
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251 | IGCM_sys_Mv ${New_SUBMIT_DIR}/Job_${SubJobName}_ ${New_SUBMIT_DIR}/Job_${SubJobName} |
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252 | chmod u+x ${New_SUBMIT_DIR}/Job_${SubJobName} |
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253 | |
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254 | |
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255 | # modification on parameter files |
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256 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/sechiba.def ${New_SUBMIT_DIR}/PARAM/sechiba.def |
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257 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/stomate.def ${New_SUBMIT_DIR}/PARAM/stomate.def |
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258 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/driver.def ${New_SUBMIT_DIR}/PARAM/driver.def |
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259 | |
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260 | eval first_option=${fluxnet_SubJobParams[0]} > /dev/null 2>&1 |
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261 | if [ X${first_option} != X"Error:" ] ; then |
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262 | IGCM_card_DefineArrayFromSection ${New_SUBMIT_DIR}/COMP/spinup.card SubJobParams |
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263 | eval first_option=${spinup_SubJobParams[0]} > /dev/null 2>&1 |
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264 | |
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265 | typeset option option_ PARAM_FILE |
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266 | for option in ${fluxnet_SubJobParams[*]} ; do |
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267 | PARAM_FILE=$( echo ${option} | awk -F_ '{print $1}' ) |
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268 | echo "For parameter file ${PARAM_FILE}.def" |
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269 | option_=$( echo ${option} | sed -e "s/${PARAM_FILE}_//" ) |
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270 | eval echo "${option_}="\${fluxnet_SubJobParams_${option}} |
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271 | case ${PARAM_FILE} in |
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272 | sechiba) |
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273 | eval SECHIBA_sed ${option_} \${fluxnet_SubJobParams_${option}} |
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274 | ;; |
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275 | stomate) |
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276 | eval STOMATE_sed ${option_} \${fluxnet_SubJobParams_${option}} |
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277 | ;; |
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278 | driver) |
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279 | eval DRIVER_sed ${option_} \${fluxnet_SubJobParams_${option}} |
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280 | ;; |
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281 | esac |
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282 | |
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283 | if [ X${first_option} != X"Error:" ] ; then |
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284 | for option_ in ${spinup_SubJobParams[*]} ; do |
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285 | if [ X${option} == X${option_} ] ; then |
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286 | eval IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card SubJobParams ${option} \${fluxnet_SubJobParams_${option}} |
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287 | fi |
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288 | done |
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289 | fi |
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290 | done |
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291 | fi |
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292 | |
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293 | # Replace vegetation |
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294 | IGCM_card_WriteOption ${New_SUBMIT_DIR}/COMP/spinup.card UserChoices impose_veg y |
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295 | |
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296 | (( iphys = 0 )) |
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297 | while [ $iphys -lt ${fluxnet_FLUXNET_NbSitesParam} ] ; do |
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298 | |
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299 | # Detect if physical parameter has |
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300 | # array description or line per PFT description in the parameter file |
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301 | SearchParam="" |
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302 | ${fluxnet_FLUXNET_CompSitesParam[${iphys}]}_grep ${fluxnet_FLUXNET_NameSitesParam[${iphys}]} |
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303 | |
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304 | case ${SearchParam} in |
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305 | undefined) |
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306 | echo "ERROR : parameter ${fluxnet_FLUXNET_NameSitesParam[${iphys}]} doen't exist in ${fluxnet_FLUXNET_CompSitesParam[${iphys}]} parameter file !" |
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307 | echo "You must correct NameSiteParam option in fluxnet.card file or add new parameter in component.def file" |
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308 | echo "We must STOP here." |
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309 | exit 1 |
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310 | ;; |
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311 | line) |
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312 | ipft=1 |
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313 | while [ $ipft -le ${NbPFTs} ] ; do |
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314 | if [ $ipft -lt 10 ] ; then |
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315 | numpft=0${ipft} |
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316 | else |
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317 | numpft=${ipft} |
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318 | fi |
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319 | |
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320 | ${fluxnet_FLUXNET_CompSitesParam[${iphys}]}_sed ${fluxnet_FLUXNET_NameSitesParam[${iphys}]}__${numpft} ${fluxnet_FLUXNET_Sites[$(( index + 4 + ( iphys * NbPFTs ) + ipft - 1 )) ]} |
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321 | (( ipft = ipft + 1 )) |
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322 | done |
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323 | ;; |
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324 | vector) |
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325 | unset ValueSiteParams |
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326 | ipft=0 |
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327 | while [ $ipft -lt ${NbPFTs} ] ; do |
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328 | ValueSiteParams[${ipft}]=${fluxnet_FLUXNET_Sites[$(( index + 4 + ( iphys * NbPFTs ) + ipft - 1 )) ]} |
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329 | (( ipft = ipft + 1 )) |
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330 | done |
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331 | ${fluxnet_FLUXNET_CompSitesParam[${iphys}]}_sed ${fluxnet_FLUXNET_NameSitesParam[${iphys}]} "${ValueSiteParams[*]}" |
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332 | ;; |
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333 | esac |
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334 | |
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335 | (( iphys = iphys + 1 )) |
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336 | done |
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337 | |
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338 | IGCM_debug_Verif_Exit |
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339 | |
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340 | # Lauch the SPINUP Job : |
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341 | |
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342 | echo "#!/bin/ksh" > ${RUN_DIR_PATH}/SubJob${site}.ksh |
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343 | echo "MODIPSL=${MODIPSL}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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344 | echo "libIGCM=${libIGCM}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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345 | echo "cd ${New_SUBMIT_DIR}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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346 | echo "export SUBMIT_DIR=${New_SUBMIT_DIR}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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347 | echo ". ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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348 | echo ". ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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349 | echo "export Script_Output=out_qsub_${SubJobName}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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350 | echo "export config_UserChoices_JobName=${SubJobName}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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351 | echo "export CumulPeriod=1" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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352 | # echo "nohup Job_${SubJobName}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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353 | echo "IGCM_sys_Qsub Job_${SubJobName}" >> ${RUN_DIR_PATH}/SubJob${site}.ksh |
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354 | |
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355 | if [ ${DRYRUN} -le 1 ] ; then |
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356 | chmod u+x ${RUN_DIR_PATH}/SubJob${site}.ksh |
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357 | nohup ${RUN_DIR_PATH}/SubJob${site}.ksh |
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358 | fi |
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359 | |
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360 | IGCM_debug_Verif_Exit |
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361 | |
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362 | (( isite=isite+1 )) |
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363 | (( index=index+NumInfosBySite )) |
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364 | done |
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365 | |
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366 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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