1 | #!/bin/ksh |
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2 | |
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3 | ######################################################################## |
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4 | |
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5 | #D- Flag to determine if this job in a standalone mode |
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6 | #D- Default : value from AA_job if any |
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7 | StandAlone=${StandAlone:=true} |
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8 | |
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9 | #D- Increased verbosity (1, 2, 3) |
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10 | #D- Default : value from AA_job if any |
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11 | Verbosity=${Verbosity:=3} |
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12 | |
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13 | #D- Low level debug : to bypass lib test checks and stack construction |
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14 | #D- Default : value from AA_job if any |
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15 | DEBUG_debug=${DEBUG_debug:=false} |
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16 | |
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17 | #RUN_DIR_PATH=${RUN_DIR_PATH:=/tmp/tmp$$} |
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18 | |
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19 | ######################################################################## |
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20 | |
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21 | MODIPSL=$1 |
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22 | libIGCM=${libIGCM:=${MODIPSL}/libIGCM} |
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23 | |
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24 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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25 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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26 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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27 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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28 | |
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29 | ######################################################################## |
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30 | #set -vx |
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31 | ######################################################################## |
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32 | # Script input parameters |
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33 | |
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34 | # Site name |
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35 | SiteArg=$2 |
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36 | Site=${SiteArg:=Gu} |
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37 | # Time in years in file for this site : |
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38 | DureeArg=$3 |
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39 | export DUREE=${DureeArg:=1} |
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40 | |
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41 | # First year in file for this site : |
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42 | FirstArg=$4 |
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43 | export FYEAR=${FirstArg:=1} |
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44 | |
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45 | (( LYEAR=FYEAR+DUREE-1 )) |
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46 | export LYEAR |
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47 | |
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48 | |
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49 | # Atlas Name : |
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50 | AtlasCfgArg=$5 |
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51 | AtlasCfg=${AtlasCfgArg:=atlas_FLUXNET.cfg} |
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52 | |
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53 | # observation_file |
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54 | observation_file_pathArg=$6 |
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55 | observation_file_path=${observation_file_pathArg:='${R_IN}/BC/OOL/${config_UserChoices_TagName}/FLUXNET/OLD/${Site}.nc'} |
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56 | #/home/mancip/IGCM/BC/OOL/OL2/FLUXNET/OBS/${Site}_obs_gapfilled.nc |
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57 | |
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58 | # Modulo for SpinUp years |
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59 | ModuloArg=$9 |
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60 | |
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61 | #if [ ${DEBUG_debug} = true ] ; then |
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62 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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63 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
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64 | #fi |
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65 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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66 | |
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67 | if [ ${StandAlone} = true ] ; then |
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68 | CARD_DIR=${SUBMIT_DIR} |
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69 | else |
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70 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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71 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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72 | fi |
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73 | |
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74 | # |
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75 | # First of all |
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76 | # |
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77 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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78 | typeset option |
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79 | for option in ${config_UserChoices[*]} ; do |
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80 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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81 | done |
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82 | # |
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83 | echo |
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84 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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85 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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86 | if [ 3 -le ${Verbosity} ] ; then |
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87 | echo "--------------Debug3-->" "config_UserChoices_LongName=" |
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88 | echo "--------------Debug3-->" \"${config_UserChoices_LongName}\" |
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89 | fi |
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90 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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91 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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92 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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93 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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94 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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95 | echo |
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96 | |
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97 | |
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98 | # FLAG = SECHIBA, OK_STOMATE |
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99 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/fluxnet.card UserChoices ok_stomate |
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100 | if [ X${fluxnet_UserChoices_ok_stomate} = Xn ] ; then |
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101 | export FLAG=SECHIBA |
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102 | else |
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103 | export FLAG=OK_STOMATE |
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104 | fi |
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105 | |
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106 | #================================== |
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107 | |
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108 | SpinUpJob=${Site}${config_UserChoices_JobName} |
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109 | |
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110 | R_BC=${R_IN}/BC |
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111 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}/${SpinUpJob}/SPIN |
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112 | |
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113 | # look at files |
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114 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/fluxnet.card UserChoices DEBUG_SPIN |
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115 | if [ X${fluxnet_UserChoices_DEBUG_SPIN} = Xn ] ; then |
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116 | set -A liste_fichiers_with_path -- $( \ls -rt ${R_SAVE}/Output/${SpinUpJob}*/SRF/Output/MO/*_sechiba_history.nc ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}/${SpinUpJob}HIST/SRF/Output/MO/*_sechiba_history.nc ) |
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117 | else |
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118 | set -A liste_fichiers_with_path -- $( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}/${SpinUpJob}*/SRF/Output/MO/*_sechiba_history.nc ) |
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119 | fi |
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120 | |
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121 | ii=0 |
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122 | for file in ${liste_fichiers_with_path[@]} ; do |
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123 | liste_fichiers[$ii]=$( echo ${file} | xargs basename ) |
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124 | (( ii = ii + 1 )) |
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125 | done |
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126 | echo ${liste_fichiers[*]} |
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127 | |
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128 | # Get and sed atlas |
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129 | IGCM_sys_Cp ${CARD_DIR}/${AtlasCfg} ./atlas.cfg |
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130 | |
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131 | # Set default Modulo parameter to the last file |
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132 | eval NbFiles=${#liste_fichiers[@]} |
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133 | echo "NbFiles=" $NbFiles |
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134 | Modulo=${ModuloArg:=$(( NbFiles - 1 ))} |
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135 | |
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136 | # Get last time_axis patch |
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137 | Last_Patch_File=$( ls -t ${libIGCM}/libIGCM_post/IGCM_Patch_*_histcom_time_axis.ksh | tail -1 ) |
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138 | #echo "source patch file : ${Last_Patch_File}" |
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139 | # . ${Last_Patch_File} |
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140 | # Last_Patch=$( echo ${Last_Patch_File} | sed -e "s&${libIGCM}/libIGCM_post/\(.*\)\.ksh&\1&" ) |
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141 | #echo "We will apply the patch on all sechiba files : " ${Last_Patch} |
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142 | |
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143 | # Apply atlas |
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144 | ii=0 |
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145 | for file in ${liste_fichiers[*]} ; do |
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146 | |
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147 | DirFile=$( dirname ${liste_fichiers_with_path[$ii]} ) |
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148 | echo ${DirFile} |
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149 | |
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150 | # First apply the last time_axis patch |
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151 | # IGCM_sys_Cd ${DirFile} |
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152 | # ${Last_Patch} ${file} |
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153 | # # clean dir |
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154 | # rm out_rsync |
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155 | # # Then return to RUN_DIR_PATH |
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156 | # IGCM_sys_Cd ${RUN_DIR_PATH} |
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157 | |
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158 | if [ $ii -eq 0 ] ; then |
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159 | file_=${file} |
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160 | # copy files we need for ATLAS |
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161 | IGCM_sys_Cp -p ${liste_fichiers_with_path[$ii]} . |
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162 | fi |
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163 | echo "!!!!!!!!!!!!!!!!!" |
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164 | echo ${file} |
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165 | export F_FILE=${Site} |
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166 | echo $ii "Modulo : " $( expr $ii \% $Modulo ) |
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167 | if [ $ii -gt 0 ] && [ X$( expr $ii \% $Modulo ) = X0 ] ; then |
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168 | |
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169 | # copy files we need for ATLAS |
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170 | IGCM_sys_Cp -Rp ${liste_fichiers_with_path[$ii]} . |
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171 | |
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172 | reference_file=${file_} |
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173 | eval observation_file=${observation_file_path} |
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174 | echo "ATLAS DIFF for files : " ${file} ${reference_file} ${observation_file} |
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175 | |
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176 | #cat atlas.cfg |
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177 | sed -e "s,RRRRRRR,${reference_file},g" -e "s,VVVVVVV,${observation_file},g" atlas.cfg > atlas_.cfg |
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178 | #cat atlas_.cfg |
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179 | AtlasPath=$( echo ${file} | sed -e 's/_1M_sechiba_history.nc//' ) |
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180 | atlas -o ATLAS_DIFF_${AtlasPath} atlas_.cfg ${file} |
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181 | |
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182 | # Save files |
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183 | IGCM_sys_Put_Dir ATLAS_DIFF_${AtlasPath} ${R_SAVE} |
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184 | # IGCM_sys_Rm -Rf ATLAS_DIFF_${AtlasPath} |
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185 | echo "&&&&&&&&&&&&&&&&!" |
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186 | |
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187 | file_=${file} |
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188 | fi |
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189 | (( ii=ii+1 )) |
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190 | done |
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191 | |
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192 | # old history file |
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193 | reference_file_pathArg=$7 |
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194 | reference_file_path=${reference_file_pathArg:=${file}} |
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195 | echo ${reference_file_path} |
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196 | |
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197 | eval reference_file=${reference_file_path} |
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198 | sed -e "s,RRRRRRR,${reference_file},g" -e "s,VVVVVVV,${observation_file},g" atlas.cfg > atlas_.cfg |
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199 | |
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200 | echo "REFERENCE ATLAS for file : " ${file} ${reference_file} ${observation_file} |
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201 | reference_config=$8 |
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202 | atlas -o ATLAS_DIFF_${SpinUpJob}_${reference_config} atlas_.cfg ${file} |
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203 | |
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204 | # Save files |
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205 | IGCM_sys_Put_Dir ATLAS_DIFF_${SpinUpJob}_${reference_config} ${R_SAVE} |
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206 | |
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207 | IGCM_sys_Rm -Rf ATLAS_DIFF_${SpinUpJob}_${reference_config} |
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208 | |
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209 | |
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210 | |
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211 | # # Get and Apply Patch |
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212 | # . ${MODIPSL}/libIGCM/libIGCM_post/IGCM_Patch_20070220_histcom_time_axis.ksh |
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213 | # for file in ${liste_fichiers[*]} ; do |
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214 | # IGCM_Patch_20070220_histcom_time_axis ${file} |
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215 | # done |
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216 | |
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217 | # # look at files |
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218 | # echo "after Patch" IGCM_Patch_20070220_histcom_time_axis |
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219 | # \ls -lrt *_sechiba_history.nc |
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220 | |
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221 | # Concat files |
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222 | #IGCM_sys_ncrcat -o ${SpinUpJob}_1M_sechiba_history.nc ${liste_fichiers[*]} |
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223 | |
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224 | IGCM_sys_Rm -Rf ${liste_fichiers[*]} |
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225 | |
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226 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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