Changeset 8423
- Timestamp:
- 2024-02-13T13:45:31+01:00 (5 months ago)
- Location:
- branches/ORCHIDEE_2_2/ORCHIDEE
- Files:
-
- 11 edited
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src_parameters/constantes.f90 (modified) (2 diffs)
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src_parameters/constantes_var.f90 (modified) (2 diffs)
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src_sechiba/hydrol.f90 (modified) (18 diffs)
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src_sechiba/sechiba.f90 (modified) (7 diffs)
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src_sechiba/slowproc.f90 (modified) (27 diffs)
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src_stomate/stomate.f90 (modified) (13 diffs)
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src_stomate/stomate_io.f90 (modified) (6 diffs)
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src_stomate/stomate_litter.f90 (modified) (8 diffs)
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src_xml/context_input_orchidee.xml (modified) (5 diffs)
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src_xml/field_def_orchidee.xml (modified) (3 diffs)
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src_xml/file_def_orchidee.xml (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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branches/ORCHIDEE_2_2/ORCHIDEE/src_parameters/constantes.f90
r8418 r8423 143 143 !Config Units = BOOLEAN 144 144 CALL getin_p('SPINUP_ANALYTIC',spinup_analytic) 145 ! 146 !Config Key = OK_MOYANO_SOILHUMSAT 147 !Config Desc = Activation of Moyano equation for control_moist in stomate_litter. 148 !Config If = OK_STOMATE 149 !Config Def = n 150 !Config Help = Activate this option if you want to use Moyano equation 151 !to define control_moist in stomate_litter. 152 !Config Units = [FLAG] 153 CALL getin_p('OK_MOYANO_SOILHUMSAT',ok_moyano_soilhumsat) 154 ! 155 !Config Key = OK_ORGA 156 !Config Desc = Activation of Moyano equation for control_moist in 157 !stomate_litter. 158 !Config If = OK_STOMATE and OK_MOYANO_SOILHUMSAT 159 !Config Def = n 160 !Config Help = Activate this option if you want to use the organic part 161 !of the Moyano equation for soil rich in C. 162 !to define control_moist in stomate_litter. 163 !Config Units = [FLAG] 164 CALL getin_p('OK_ORGA',ok_orga) 145 165 146 ENDIF 166 147 … … 1881 1862 !Config Units = [-] 1882 1863 CALL getin_p('MOISTCONT_MIN',moistcont_min) 1883 ! 1884 !Config Key = BETA1 1885 !Config Desc = Parameter for Moyano et al 2012 PRSR model(2) 1886 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1887 !Config Def = -0.26 1888 !Config Help = 1889 !Config Units = [-] 1890 CALL getin_p('BETA1',beta1) 1891 ! 1892 !Config Key = BETA1_ORGA 1893 !Config Desc = Parameter for Moyano et al 2012 PRSR model(3) 1894 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1895 !Config Def = -0.67 1896 !Config Help = 1897 !Config Units = [-] 1898 CALL getin_p('BETA1_ORGA',beta1_orga) 1899 ! 1900 !Config Key = BETA2 1901 !Config Desc = Parameter for Moyano et al 2012 PRSR model(2) 1902 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1903 !Config Def = 0.32 1904 !Config Help = 1905 !Config Units = [-] 1906 CALL getin_p('BETA2',beta2) 1907 ! 1908 !Config Key = BETA2_ORGA 1909 !Config Desc = Parameter for Moyano et al 2012 PRSR model(3) 1910 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1911 !Config Def = 1.08 1912 !Config Help = 1913 !Config Units = [-] 1914 CALL getin_p('BETA2_ORGA',beta2_orga) 1915 ! 1916 !Config Key = BETA3 1917 !Config Desc = Parameter for Moyano et al 2012 PRSR model(2) 1918 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1919 !Config Def = -0.15 1920 !Config Help = 1921 !Config Units = [-] 1922 CALL getin_p('BETA3',beta3) 1923 ! 1924 !Config Key = BETA3_ORGA 1925 !Config Desc = Parameter for Moyano et al 2012 PRSR model(3) 1926 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1927 !Config Def = -0.57 1928 !Config Help = 1929 !Config Units = [-] 1930 CALL getin_p('BETA3_ORGA',beta3_orga) 1931 ! 1932 !Config Key = BETA4 1933 !Config Desc = Parameter for Moyano et al 2012 PRSR model(2) 1934 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1935 !Config Def = 0.08 1936 !Config Help = 1937 !Config Units = [-] 1938 CALL getin_p('BETA4',beta4) 1939 ! 1940 !Config Key = BETA5 1941 !Config Desc = Parameter for Moyano et al 2012 PRSR model(2) 1942 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1943 !Config Def = -0.09 1944 !Config Help = 1945 !Config Units = [-] 1946 CALL getin_p('BETA5',beta5) 1947 ! 1948 !Config Key = BETA6 1949 !Config Desc = Prameter for Moyano et al 2012 PRSR model(2) 1950 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1951 !Config Def = 0.57 1952 !Config Help = 1953 !Config Units = [-] 1954 CALL getin_p('BETA6',beta6) 1955 ! 1956 !Config Key = INTERCEPT 1957 !Config Desc = Prameter for Moyano et al 2012 PRSR model(2) 1958 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1959 !Config Def = 1.059 1960 !Config Help = 1961 !Config Units = [-] 1962 CALL getin_p('INTERCEPT',intercept) 1963 ! 1964 !Config Key = INTERCEPT_ORGA 1965 !Config Desc = Prameter for Moyano et al 2012 PRSR model(3) 1966 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1967 !Config Def = 1.134 1968 !Config Help = 1969 !Config Units = [-] 1970 CALL getin_p('INTERCEPT_ORGA',intercept_orga) 1971 ! 1972 !Config Key = SRO 1973 !Config Desc = Initial respiration value (SR0) arbitrary defined at 1.0 1974 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1975 !Config Def = 1.0 1976 !Config Help = 1977 !Config Units = [-] 1978 CALL getin_p('SRO',SRo) 1979 ! 1980 !Config Key = MOISTCONSTSAT_MIN 1981 !Config Desc = minimum soil wetness to limit the heterotrophic respiration 1982 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1983 !Config Def = 0.0 1984 !Config Help = 1985 !Config Units = [-] 1986 CALL getin_p('MOISTCONSTSAT_MIN',moistcontSAT_min) 1987 ! 1988 !Config Key = SOILHEIGHT 1989 !Config Desc = soilheight to converte gC/m2soil to gC/gsoil 1990 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1991 !Config Def = 0.1 1992 !Config Help = 1993 !Config Units = [-] 1994 CALL getin_p('SOILHEIGHT',soilheight) 1995 ! 1996 !Config Key = CINI_MOYANO 1997 !Config Desc = Carbon content to initialize Moyano equation 1998 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 1999 !Config Def = 1000.0 2000 !Config Help = 2001 !Config Units = [gC/m3] 2002 CALL getin_p('CINI_MOYANO',Cini_Moyano) 2003 ! 2004 !Config Key = LITTERINI_MOYANO 2005 !Config Desc = Carbon litter content to initialize Moyano equation 2006 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2007 !Config Def = 1000.0 2008 !Config Help = 2009 !Config Units = [gC/m3] 2010 CALL getin_p('LITTERINI_MOYANO',Litterini_Moyano) 2011 ! 2012 !Config Key = MAX_CARBON_MOYANO 2013 !Config Desc = Maximum carbon concentration in the database used by Moyano et al 2014 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2015 !Config Def = 0.35 2016 !Config Help = 2017 !Config Units = [gC/g soil] 2018 CALL getin_p('MAX_CARBON_MOYANO',max_carbon_moyano) 2019 ! 2020 !Config Key = MIN_CARBON_MOYANO 2021 !Config Desc = Minimum carbon concentration in the database used by Moyano et al 2022 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2023 !Config Def = 0.01 2024 !Config Help = 2025 !Config Units = [gC/g soil] 2026 CALL getin_p('MIN_CARBON_MOYANO',min_carbon_moyano) 2027 ! 2028 !Config Key = LIMIT_CARBON_ORGA 2029 !Config Desc = Minimum carbon concentration in the database for organic soil used by Moyano et al 2030 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2031 !Config Def = 0.06 2032 !Config Help = 2033 !Config Units = [gC/g soil] 2034 CALL getin_p('LIMIT_CARBON_ORGA',limit_carbon_orga) 2035 ! 2036 !Config Key = MAX_CLAY_MOYANO 2037 !Config Desc = Maximum clay fraction in the database used by Moyano et al 2038 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2039 !Config Def = 0.58 2040 !Config Help = 2041 !Config Units = [-] 2042 CALL getin_p('MAX_CLAY_MOYANO',max_clay_moyano) 2043 ! 2044 !Config Key = MIN_CLAY_MOYANO 2045 !Config Desc = Minimum clay fraction in the database used by Moyano et al 2046 !Config If = OK_STOMATE, OK_MOYANO_SOILHUMSAT 2047 !Config Def = 0.03 2048 !Config Help = 2049 !Config Units = [-] 2050 CALL getin_p('MIN_CLAY_MOYANO',min_clay_moyano) 1864 2051 1865 !- 2052 1866 ! lpj parameters -
branches/ORCHIDEE_2_2/ORCHIDEE/src_parameters/constantes_var.f90
r8418 r8423 702 702 !$OMP THREADPRIVATE(veget_year_orig) 703 703 704 REAL(r_std), SAVE :: bulk_default = 1000.0 !! Default value for bulk density of soil (kg/m3)705 !$OMP THREADPRIVATE(bulk_default)706 704 REAL(r_std), SAVE :: min_vegfrac = 0.001 !! Minimal fraction of mesh a vegetation type can occupy (0-1, unitless) 707 705 !$OMP THREADPRIVATE(min_vegfrac) … … 1024 1022 !$OMP THREADPRIVATE(moistcont_min) 1025 1023 1026 ! 4. Moyano et la. 2012 Biogeosciences 1027 1028 LOGICAL, SAVE :: ok_moyano_soilhumsat = .FALSE. !! Use soilhumSAT and Moyano formulation for control_moist 1029 !$OMP THREADPRIVATE(ok_moyano_soilhumsat) 1030 LOGICAL, SAVE :: ok_orga = .TRUE. !! Do we use also the equation designed for organic soils by Moyano et al. 1031 !! for control_moist 1032 !$OMP THREADPRIVATE(ok_orga) 1033 REAL(r_std), SAVE :: beta1 = -0.26 !! 1st(Beta1*M) term of Moyano' PRSR model 2 1034 !! for fraction of saturation Beta1= [-0.28,-0.24] 1035 !$OMP THREADPRIVATE(beta1) 1036 REAL(r_std), SAVE :: beta2 = 0.32 !! 2nd(Beta2*M^2) term of Moyano' PRSR model 2 1037 !! for fraction of saturation Beta2= [0.28,0.36] 1038 !$OMP THREADPRIVATE(beta2) 1039 REAL(r_std), SAVE :: beta3 = -0.15 !! 3rd(Beta3*M^3) term of Moyano' PRSR model 2 1040 !! for fraction of saturation Beta3= [-0.18,-0.12] 1041 !$OMP THREADPRIVATE(beta3) 1042 REAL(r_std), SAVE :: beta1_orga = -0.67 !! 1st(Beta1*M) term of Moyano' PRSR model 3 1043 !! for fraction of saturation Beta1= [-0.65,-0.69] 1044 !$OMP THREADPRIVATE(beta1_orga) 1045 REAL(r_std), SAVE :: beta2_orga = 1.08 !! 2nd(Beta2*M^2) term of Moyano' PRSR model 3 1046 !! for fraction of saturation Beta2= [1.03,1.13] 1047 !$OMP THREADPRIVATE(beta2_orga) 1048 REAL(r_std), SAVE :: beta3_orga = -0.57 !! 3rd(Beta3*M^3) term of Moyano' PRSR model 3 1049 !! for fraction of saturation Beta3= [-0.54,-0.60] 1050 !$OMP THREADPRIVATE(beta3_orga) 1051 REAL(r_std), SAVE :: beta4 = 0.08 !! 4th(Beta4*clay) term of Moyano' PRSR model 2 1052 !! for fraction of saturation Beta4= [0.07,0.09] 1053 !$OMP THREADPRIVATE(beta4) 1054 REAL(r_std), SAVE :: beta5 = -0.09 !! 5th(Beta5*M*clay) term of Moyano' PRSR model 2 1055 !! for fraction of saturation Beta5= [-0.10,-0.08] 1056 !$OMP THREADPRIVATE(beta5) 1057 REAL(r_std), SAVE :: beta6 = 0.57 !! 6th(Beta6*SOC) term of Moyano' PRSR model 2 1058 !! for fraction of saturation Beta6= [0.53,0.61] 1059 !$OMP THREADPRIVATE(beta6) 1060 REAL(r_std), SAVE :: intercept = 1.059 !! intercept term of Moyano' PRSR model 2 1061 !! for fraction of saturation intercept= [1.056,1.062] 1062 !$OMP THREADPRIVATE(intercept) 1063 REAL(r_std), SAVE :: intercept_orga = 1.134 !! intercept term of Moyano' PRSR model 3 1064 !! for fraction of saturation intercept= [1.131,1.137] 1065 !$OMP THREADPRIVATE(intercept_orga) 1066 REAL(r_std), SAVE :: SRo = 1.0 !! Initial respiration value (SR0) arbitrary defined at 1.0 1067 !$OMP THREADPRIVATE(SRo) 1068 REAL(r_std), SAVE :: moistcontSAT_min = 0.0 !! minimum soil wetness to limit the heterotrophic respiration 1069 !$OMP THREADPRIVATE(moistcontSAT_min) 1070 REAL(r_std), SAVE :: soilheight = 0.10 !! soil height in meter to converte totalSOC 1071 !! from gC/m2soil to gC/gsoil [0.10, 0.20, 0.30, 0.50, 1m] 1072 !$OMP THREADPRIVATE(soilheight) 1073 REAL(r_std), SAVE :: Cini_Moyano = 1000_r_std !!Initial carbon content for Moyano equation (kgC/m3) 1074 !$OMP THREADPRIVATE(Cini_Moyano) 1075 REAL(r_std), SAVE :: Litterini_Moyano = 1000_r_std !!Initial litter carbon content for Moyano equation (kgC/m3) 1076 !$OMP THREADPRIVATE(Litterini_Moyano) 1077 REAL(r_std), SAVE :: min_carbon_moyano = 0.01 !! Minimum carbon concentration in the database 1078 !! used by Moyano et al (gC/gSoil) 1079 !$OMP THREADPRIVATE(min_carbon_moyano) 1080 REAL(r_std), SAVE :: max_carbon_moyano = 0.35 !! Maximum carbon concentration in the database 1081 !! used by Moyano et al (gC/gSoil) 1082 !$OMP THREADPRIVATE(max_carbon_moyano) 1083 REAL(r_std), SAVE :: limit_carbon_orga = 0.06 !! Minimum carbon concentration in the database 1084 !! for organic soil used by Moyano et al (gC/gSoil) 1085 !$OMP THREADPRIVATE(limit_carbon_orga) 1086 REAL(r_std), SAVE :: min_clay_moyano = 0.03 !! Minimum clay fraction in the database used by Moyano et al (unitless) 1087 !$OMP THREADPRIVATE(min_clay_moyano) 1088 REAL(r_std), SAVE :: max_clay_moyano = 0.58 !! Maximum clay fraction in the database used by Moyano et al (unitless) 1089 !$OMP THREADPRIVATE(max_clay_moyano) 1024 1090 1025 ! 1091 1026 ! stomate_lpj.f90 -
branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/hydrol.f90
r8418 r8423 415 415 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: soil_wet_litter !! Soil wetness aove mvw in the litter (0-1, unitless) 416 416 !$OMP THREADPRIVATE(soil_wet_litter) 417 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: soil_wet_litterSAT!!Soil wetness above mvw in the litter (0-1, unitless)418 !! with respect to(tmc_litter_sat-tmc_litter_wilt)419 !$OMP THREADPRIVATE(soil_wet_litterSAT)420 417 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:,:) :: qflux_ns !! Diffusive water fluxes between soil layers 421 418 !! (at lower interface) … … 575 572 & tot_melt, transpir, precip_rain, precip_snow, returnflow, reinfiltration, irrigation, & 576 573 & humrel, vegstress, drysoil_frac, evapot, evapot_penm, evap_bare_lim, evap_bare_lim_ns, & 577 & flood_frac, flood_res, shumdiagSAT,litterhumdiagSAT,&574 & flood_frac, flood_res, & 578 575 & shumdiag,shumdiag_perma, k_litt, litterhumdiag, soilcap, soiltile, fraclut, reinf_slope_soil, rest_id, hist_id, hist2_id,& 579 576 & contfrac, stempdiag, & … … 653 650 !! with respect to (mcfc-mcw) 654 651 !! (unitless; can be out of 0-1) 655 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (out):: shumdiagSAT !! Relative soil moisture in each soil layer656 !! with respect to (mcs-mcw)657 !! (unitless; can be out of 0-1)658 !! used in Stomate, for Moyano et al 2012 equation659 652 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (out):: shumdiag_perma !! Percent of porosity filled with water (mc/mcs) used for the thermal computations 660 653 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: k_litt !! litter approximate conductivity 661 654 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: litterhumdiag !! litter humidity 662 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: litterhumdiagSAT !!litter humidity663 !! with respect to(tmc_litter_sat-tmc_litter_wilt)664 655 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: tot_melt !! Total melt 665 656 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: floodout !! Flux out of floodplains … … 815 806 transpir, vevapnu, evapot, evapot_penm, runoff, drainage, & 816 807 returnflow, reinfiltration, irrigation, & 817 tot_melt,evap_bare_lim,evap_bare_lim_ns, shumdiagSAT,shumdiag, shumdiag_perma, &818 k_litt, litterhumdiagSAT,litterhumdiag, humrel, vegstress, drysoil_frac,&808 tot_melt,evap_bare_lim,evap_bare_lim_ns, shumdiag, shumdiag_perma, & 809 k_litt, litterhumdiag, humrel, vegstress, drysoil_frac,& 819 810 stempdiag,snow,snowdz, tot_bare_soil, u, v, tq_cdrag, & 820 811 mc_layh, mcl_layh, root_deficit, veget) … … 1781 1772 ALLOCATE (soil_wet_litter(kjpindex,nstm),stat=ier) 1782 1773 IF (ier /= 0) CALL ipslerr_p(3,'hydrol_init','Problem in allocate of variable soil_wet_litter','','') 1783 1784 ALLOCATE (soil_wet_litterSAT(kjpindex,nstm),stat=ier)1785 IF (ier /= 0) CALL ipslerr_p(3,'hydrol_init','Problem in allocate of variable soil_wet_litterSAT','','')1786 1774 1787 1775 ALLOCATE (qflux_ns(kjpindex,nslm,nstm),stat=ier) … … 2403 2391 IF (ALLOCATED (soil_wet_ns)) DEALLOCATE (soil_wet_ns) 2404 2392 IF (ALLOCATED (soil_wet_litter)) DEALLOCATE (soil_wet_litter) 2405 IF (ALLOCATED (soil_wet_litterSAT)) DEALLOCATE (soil_wet_litterSAT)2406 2393 IF (ALLOCATED (qflux_ns)) DEALLOCATE (qflux_ns) 2407 2394 IF (ALLOCATED (tmat)) DEALLOCATE (tmat) … … 3674 3661 & transpir, vevapnu, evapot, evapot_penm, runoff, drainage, & 3675 3662 & returnflow, reinfiltration, irrigation, & 3676 & tot_melt, evap_bare_lim, evap_bare_lim_ns, shumdiagSAT,shumdiag, shumdiag_perma,&3677 & k_litt, litterhumdiagSAT,litterhumdiag, humrel,vegstress, drysoil_frac, &3663 & tot_melt, evap_bare_lim, evap_bare_lim_ns, shumdiag, shumdiag_perma,& 3664 & k_litt, litterhumdiag, humrel,vegstress, drysoil_frac, & 3678 3665 & stempdiag,snow, & 3679 3666 & snowdz, tot_bare_soil, u, v, tq_cdrag, mc_layh, mcl_layh, root_deficit, veget) … … 3737 3724 REAL(r_std), DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiag !! Relative soil moisture in each diag soil layer 3738 3725 !! with respect to (mcfc-mcw) (unitless, [0-1]) 3739 REAL(r_std), DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiagSAT !! Relative soil moisture in each diag soil layer3740 !! with respect to(mcs-mcw)(unitless,[0-1])3741 !! used in stomate for Moyano et al 2012 equation3742 3726 REAL(r_std), DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiag_perma !! Percent of porosity filled with water (mc/mcs) 3743 3727 !! in each diag soil layer (for the thermal computations) … … 3747 3731 REAL(r_std), DIMENSION (kjpindex), INTENT (out) :: litterhumdiag !! Mean of soil_wet_litter across soil tiles 3748 3732 !! (unitless, [0-1]) 3749 REAL(r_std), DIMENSION (kjpindex), INTENT (out) ::litterhumdiagSAT !! Mean of soil_wet_litterSAT across soil tiles3750 !!(unitless, [0-1])3751 !! with respect to(tmc_litter_sat-tmc_litter_wilt)3752 3733 REAL(r_std), DIMENSION (kjpindex, nvm), INTENT(out) :: vegstress !! Veg. moisture stress (only for vegetation 3753 3734 !! growth) (unitless, [0-1]) … … 4423 4404 END DO 4424 4405 4425 ! Subsequent calculation of soil_wet_litterSAT (tmc-tmcw)/(tmcs-tmcw)4426 ! Based on liquid water content4427 DO ji=1,kjpindex4428 soil_wet_litterSAT(ji,jst) = MIN(un, MAX(zero,&4429 & (tmc_litter(ji,jst)-tmc_litter_wilt(ji,jst)) / &4430 & (tmc_litter_sat(ji,jst)-tmc_litter_wilt(ji,jst)) ))4431 END DO4432 4433 4434 4406 ! Preliminary calculation of various soil moistures (for each layer, in kg/m2) 4435 4407 sm(:,1) = dz(2) * (trois*mcl(:,1,jst) + mcl(:,2,jst))/huit … … 4652 4624 4653 4625 ! For consistency in stomate, we also set moderwilt and soil_wet_ns to zero in this case. 4654 ! They are used later for shumdiag , shumdiagSATand shumdiag_perma4626 ! They are used later for shumdiag and shumdiag_perma 4655 4627 DO jsl = 1,nslm 4656 4628 WHERE (is_under_mcr(:,jst)) … … 4699 4671 !! 7. Summing 3d variables into 2d variables 4700 4672 CALL hydrol_diag_soil (ks, nvan, avan, mcr, mcs, mcfc, mcw, kjpindex, veget_max, soiltile, njsc, runoff, drainage, & 4701 & evapot, vevapnu, returnflow, reinfiltration, irrigation, shumdiagSAT,&4702 & shumdiag,shumdiag_perma, k_litt, litterhumdiagSAT,litterhumdiag, humrel, vegstress, drysoil_frac,tot_melt)4673 & evapot, vevapnu, returnflow, reinfiltration, irrigation, & 4674 & shumdiag,shumdiag_perma, k_litt, litterhumdiag, humrel, vegstress, drysoil_frac,tot_melt) 4703 4675 4704 4676 ! Means of wtd, runoff and drainage corrections, across soiltiles … … 6443 6415 6444 6416 SUBROUTINE hydrol_diag_soil (ks, nvan, avan, mcr, mcs, mcfc, mcw, kjpindex, veget_max, soiltile, njsc, runoff, drainage, & 6445 & evapot, vevapnu, returnflow, reinfiltration, irrigation, shumdiagSAT,&6446 & shumdiag,shumdiag_perma, k_litt, litterhumdiagSAT,litterhumdiag, humrel, vegstress, drysoil_frac, tot_melt)6417 & evapot, vevapnu, returnflow, reinfiltration, irrigation, & 6418 & shumdiag,shumdiag_perma, k_litt, litterhumdiag, humrel, vegstress, drysoil_frac, tot_melt) 6447 6419 ! 6448 6420 ! interface description … … 6476 6448 REAL(r_std), DIMENSION (kjpindex), INTENT(out) :: drainage !! Drainage 6477 6449 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiag !! relative soil moisture 6478 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiagSAT !! relative soil moisture with respect to (mcs-mcw)6479 6450 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (out) :: shumdiag_perma !! Percent of porosity filled with water (mc/mcs) used for the thermal computations 6480 6451 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: k_litt !! litter cond. 6481 6452 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: litterhumdiag !! litter humidity 6482 REAL(r_std),DIMENSION (kjpindex), INTENT (out) :: litterhumdiagSAT!! litter humidity6483 !! with respect to(tmc_litter_sat-tmc_litter_wilt)6484 6453 REAL(r_std),DIMENSION (kjpindex,nvm), INTENT (out) :: humrel !! Relative humidity 6485 6454 REAL(r_std), DIMENSION (kjpindex, nvm), INTENT(out) :: vegstress !! Veg. moisture stress (only for vegetation growth) … … 6527 6496 humtot(:) = zero 6528 6497 shumdiag(:,:)= zero 6529 shumdiagSAT(:,:)= zero6530 6498 shumdiag_perma(:,:)=zero 6531 6499 k_litt(:) = zero 6532 6500 litterhumdiag(:) = zero 6533 litterhumdiagSAT(:) = zero6534 6501 tmc_litt_dry_mea(:) = zero 6535 6502 tmc_litt_wet_mea(:) = zero … … 6604 6571 ! BUT THIS IS NOT USED ANYMORE WITH THE NEW BACKGROUNG ALBEDO 6605 6572 !! k_litt is calculated here as a grid-cell average (for consistency with drainage) 6606 !! litterhumdiag, li tterhumdiagSAT, like shumdiag,shumdiagSATis averaged over the soiltiles for transmission to stomate6573 !! litterhumdiag, like shumdiag, is averaged over the soiltiles for transmission to stomate 6607 6574 DO jst=1,nstm 6608 6575 DO ji=1,kjpindex … … 6621 6588 litterhumdiag(ji) = litterhumdiag(ji) + & 6622 6589 & soil_wet_litter(ji,jst) * soiltile(ji,jst) 6623 6624 litterhumdiagSAT(ji) = litterhumdiagSAT(ji) + &6625 & soil_wet_litterSAT(ji,jst) * soiltile(ji,jst)6626 6590 6627 6591 tmc_litt_wet_mea(ji) = tmc_litt_wet_mea(ji) + & … … 6695 6659 ENDDO 6696 6660 ENDDO 6697 6698 ! ShumdiagSAT: we start from soil_wet_ns, 6699 ! do a spatial average, excluding the nobio fraction on which stomate doesn't act 6700 DO jst=1,nstm 6701 DO jsl=1,nslm 6702 DO ji=1,kjpindex 6703 shumdiagSAT(ji,jsl) = shumdiagSAT(ji,jsl) + soil_wet_ns(ji,jsl,jst) * soiltile(ji,jst) 6704 shumdiagSAT(ji,jsl) = MAX(MIN(shumdiagSAT(ji,jsl), un), zero) 6705 ENDDO 6706 ENDDO 6707 ENDDO 6708 6661 6709 6662 ! Shumdiag_perma is based on soilmoist / moisture at saturation in the layer 6710 6663 ! Her we start from grid averages by hydrol soil layer and transform it to the diag levels -
branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/sechiba.f90
r8418 r8423 140 140 !! by thermosoil.f90 (unitless, 0-1) 141 141 !$OMP THREADPRIVATE(shumdiag) 142 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: shumdiagSAT !! Mean relative soil moisture (0-1, unitless)143 !! with respect to(mcs-mcw)144 !$OMP THREADPRIVATE(shumdiagSAT)145 142 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: shumdiag_perma !! Saturation degree of the soil 146 143 !$OMP THREADPRIVATE(shumdiag_perma) … … 149 146 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: litterhumdiag !! Litter dryness factor (unitless, 0-1) 150 147 !$OMP THREADPRIVATE(litterhumdiag) 151 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: litterhumdiagSAT!! Litter dryness factor (unitless, 0-1)152 !$OMP THREADPRIVATE(litterhumdiagSAT)153 148 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:) :: stempdiag !! Temperature which controls canopy evolution (K) 154 149 !$OMP THREADPRIVATE(stempdiag) … … 770 765 & tot_melt, transpir, precip_rain, precip_snow, returnflow, reinfiltration, irrigation, & 771 766 & humrel, vegstress, drysoil_frac, evapot, evapot_corr, evap_bare_lim, evap_bare_lim_ns, flood_frac, flood_res, & 772 & shumdiag SAT,litterhumdiagSAT,shumdiag,shumdiag_perma, k_litt, litterhumdiag, soilcap, soiltile, fraclut, reinf_slope,&767 & shumdiag,shumdiag_perma, k_litt, litterhumdiag, soilcap, soiltile, fraclut, reinf_slope_soil,& 773 768 & rest_id, hist_id, hist2_id,& 774 769 & contfrac, stempdiag, & … … 825 820 CALL slowproc_main (kjit, kjpij, kjpindex, & 826 821 index, indexveg, lalo, neighbours, resolution, contfrac, soiltile, fraclut, nwdFraclut, & 827 temp_air, temp_sol, stempdiag, shumdiagSAT,litterhumdiagSAT,&822 temp_air, temp_sol, stempdiag, & 828 823 vegstress, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, & 829 824 deadleaf_cover, & … … 1770 1765 ALLOCATE (shumdiag(kjpindex,nslm),stat=ier) 1771 1766 IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for shumdiag','','') 1772 1773 ALLOCATE (shumdiagSAT(kjpindex,nslm),stat=ier)1774 IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for shumdiagSAT','','')1775 1767 1776 1768 ALLOCATE (shumdiag_perma(kjpindex,nslm),stat=ier) … … 1779 1771 ALLOCATE (litterhumdiag(kjpindex),stat=ier) 1780 1772 IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for litterhumdiag','','') 1781 1782 ALLOCATE (litterhumdiagSAT(kjpindex),stat=ier)1783 IF (ier /= 0) CALL ipslerr_p(3,'sechiba_init','Pb in alloc for litterhumdiagSAT','','')1784 1773 1785 1774 ALLOCATE (ptnlev1(kjpindex),stat=ier) … … 2032 2021 IF ( ALLOCATED (co2_flux)) DEALLOCATE (co2_flux) 2033 2022 IF ( ALLOCATED (shumdiag)) DEALLOCATE (shumdiag) 2034 IF ( ALLOCATED (shumdiagSAT)) DEALLOCATE (shumdiagSAT)2035 2023 IF ( ALLOCATED (shumdiag_perma)) DEALLOCATE (shumdiag_perma) 2036 2024 IF ( ALLOCATED (litterhumdiag)) DEALLOCATE (litterhumdiag) 2037 IF ( ALLOCATED (litterhumdiagSAT)) DEALLOCATE (litterhumdiagSAT)2038 2025 IF ( ALLOCATED (ptnlev1)) DEALLOCATE (ptnlev1) 2039 2026 IF ( ALLOCATED (k_litt)) DEALLOCATE (k_litt) -
branches/ORCHIDEE_2_2/ORCHIDEE/src_sechiba/slowproc.f90
r8418 r8423 72 72 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: siltfraction !! Siltfraction (0-1, unitless) 73 73 !$OMP THREADPRIVATE(siltfraction) 74 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:) :: bulk !!Bulk density (kg/m**3)75 !$OMP THREADPRIVATE(bulk)76 74 REAL(r_std), ALLOCATABLE, SAVE, DIMENSION (:,:,:) :: laimap !! LAI map when the LAI is prescribed and not calculated by STOMATE 77 75 !$OMP THREADPRIVATE(laimap) … … 139 137 140 138 !! 2. Prepare for reading of PFTmap file 141 !!142 !! 2.1 Prepare for reading of bulk variable143 !!144 IF (ok_moyano_soilhumsat) THEN145 ! Get the file name from run.def file and set file attributes accordingly146 filename = 'soil_bulk_and_ph.nc'147 CALL getin_p('SOIL_BULK_FILE',filename)148 name = filename(1:LEN_TRIM(FILENAME)-3)149 CALL xios_orchidee_set_file_attr("soilbulk_file",name=name)150 151 ! Set variables that can be used in the xml files152 lerr=xios_orchidee_setvar('bulk_default',bulk_default)153 154 ! Determine if the file will be read by XIOS. If not,deactivate reading of the file.155 IF (xios_interpolation .AND. restname_in=='NONE' .AND. .NOT. impsoilt) THEN156 ! Reading will be done with XIOS later157 IF (printlev>=2) WRITE(numout,*) 'Reading of soilbulk file will be done later using XIOS. The filename is ', filename158 ELSE159 ! No reading by XIOS, deactivate soilbulk file and related variables declared in context_input_orchidee.xml.160 ! If this is not done, the model will crash if the file is not available in the run directory.161 IF (printlev>=2) WRITE(numout,*) 'Reading of soil_bulk file will not be done with XIOS.'162 CALL xios_orchidee_set_file_attr("soilbulk_file",enabled=.FALSE.)163 CALL xios_orchidee_set_field_attr("soilbulk",enabled=.FALSE.)164 CALL xios_orchidee_set_field_attr("soilbulk_mask",enabled=.FALSE.)165 END IF166 ELSE167 ! Not needed if the flag is not activated, deactivate soilbulk file and related variables168 ! declared in context_input_orchidee.xml.169 ! If this is not done, the model will crash if the file is not170 ! available in the run directory.171 IF (printlev>=2) WRITE(numout,*) 'Reading of soil_bulk file will not be done with XIOS.'172 CALL xios_orchidee_set_file_attr("soilbulk_file",enabled=.FALSE.)173 CALL xios_orchidee_set_field_attr("soilbulk",enabled=.FALSE.)174 CALL xios_orchidee_set_field_attr("soilbulk_mask",enabled=.FALSE.)175 END IF176 177 !!178 !! 2.2 Prepare for reading of PFTmap file179 !!180 181 139 filename = 'PFTmap.nc' 182 140 CALL getin_p('VEGETATION_FILE',filename) … … 419 377 rest_id_stom, hist_id_stom, hist_id_stom_IPCC, & 420 378 indexLand, lalo, neighbours, resolution, & 421 contfrac, totfrac_nobio, clayfraction, bulk,&422 temp_air, lai, veget, veget_max,&379 contfrac, totfrac_nobio, clayfraction, temp_air, & 380 lai, veget, veget_max, & 423 381 deadleaf_cover, assim_param, temp_growth ) 424 382 ENDIF … … 520 478 SUBROUTINE slowproc_main (kjit, kjpij, kjpindex, & 521 479 IndexLand, indexveg, lalo, neighbours, resolution, contfrac, soiltile, fraclut, nwdFraclut, & 522 temp_air, temp_sol, stempdiag, shumdiagSAT,litterhumdiagSAT,&480 temp_air, temp_sol, stempdiag, & 523 481 humrel, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, & 524 482 deadleaf_cover, & … … 553 511 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: stempdiag !! Soil temperature (K) 554 512 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: shumdiag !! Relative soil moisture (0-1, unitless) 555 REAL(r_std),DIMENSION (kjpindex,nslm), INTENT (in) :: shumdiagSAT !! Relative soil moisture (0-1, unitless)556 !! with respect to(mcs-mcw)557 513 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: litterhumdiag !! Litter humidity (0-1, unitless) 558 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: litterhumdiagSAT !! Litter humidity (0-1, unitless)559 !!with respect to(tmc_litter_sat-tmc_litter_wilt)560 514 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_rain !! Rain precipitation (mm dt_stomate^{-1}) 561 515 REAL(r_std),DIMENSION (kjpindex), INTENT (in) :: precip_snow !! Snow precipitation (mm dt_stomate^{-1}) … … 673 627 674 628 !! 4.1 Call stomate main routine that will call all c-cycle routines ! 675 676 629 CALL stomate_main (kjit, kjpij, kjpindex, & 677 630 IndexLand, lalo, neighbours, resolution, contfrac, totfrac_nobio, clayfraction, & 678 bulk, temp_air, temp_sol, stempdiag, humrel, shumdiag, shumdiagSAT, litterhumdiag, &679 litterhumdiagSAT, precip_rain, precip_snow, gpp, &631 temp_air, temp_sol, stempdiag, & 632 humrel, shumdiag, litterhumdiag, precip_rain, precip_snow, gpp, & 680 633 deadleaf_cover, & 681 634 assim_param, & … … 685 638 co2_flux, fco2_lu, fco2_wh, fco2_ha, & 686 639 resp_maint, resp_hetero, resp_growth, temp_growth) 640 687 641 688 642 !! 4.2 Output the respiration terms and the net primary … … 911 865 ! counter, vegetation fraction, max vegetation fraction, LAI 912 866 ! variable from stomate, fraction of bare soil, soiltype 913 ! fraction, clay fraction, bulk density,height of vegetation, map of LAI867 ! fraction, clay fraction, height of vegetation, map of LAI 914 868 915 869 CALL restput_p (rest_id, 'veget', nbp_glo, nvm, 1, kjit, veget, 'scatter', nbp_glo, index_g) … … 950 904 CALL restput_p (rest_id, 'clay_frac', nbp_glo, 1, 1, kjit, clayfraction, 'scatter', nbp_glo, index_g) 951 905 CALL restput_p (rest_id, 'sand_frac', nbp_glo, 1, 1, kjit, sandfraction, 'scatter', nbp_glo, index_g) 952 CALL restput_p (rest_id, 'bulk', nbp_glo, 1, 1, kjit, bulk, 'scatter', nbp_glo,index_g)953 906 !salma: added the following lines for restput of the soil parameters 954 907 CALL restput_p (rest_id, 'ks', nbp_glo, 1, 1, kjit, ks, 'scatter', nbp_glo, index_g) … … 976 929 ! 2.2 Write restart variables managed by STOMATE 977 930 IF ( ok_stomate ) THEN 978 CALL stomate_finalize (kjit, kjpindex, indexLand, clayfraction, bulk,assim_param)931 CALL stomate_finalize (kjit, kjpindex, indexLand, clayfraction, assim_param) 979 932 ENDIF 980 933 … … 1104 1057 siltfraction(:)=undef_sechiba 1105 1058 1106 ALLOCATE (bulk(kjpindex),stat=ier)1107 IF (ier /= 0) CALL ipslerr_p(3,'slowproc_init','Problem in allocation of variable bulk','','')1108 bulk(:)=undef_sechiba1109 1110 1059 ! Allocation of last year vegetation fraction in case of land use change 1111 1060 ALLOCATE(veget_max_new(kjpindex, nvm), STAT=ier) … … 1408 1357 CALL slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, kjpindex, & 1409 1358 lalo, neighbours, resolution, contfrac, soilclass, & 1410 clayfraction, sandfraction, siltfraction , bulk)1359 clayfraction, sandfraction, siltfraction) 1411 1360 1412 1361 call_slowproc_soilt=.FALSE. … … 1587 1536 ENDIF 1588 1537 1589 var_name= 'bulk'1590 CALL ioconf_setatt_p('UNITS', '-')1591 CALL ioconf_setatt_p('LONG_NAME','Bulk density in each mesh')1592 CALL restget_p (rest_id, var_name, nbp_glo, 1, 1, kjit, .TRUE., bulk, "gather", nbp_glo, index_g)1593 1594 1538 var_name= 'lai' 1595 1539 CALL ioconf_setatt_p('UNITS', '-') … … 1667 1611 !Config Units = [-] 1668 1612 CALL setvar_p (lai, val_exp, 'SECHIBA_LAI', llaimax) 1669 1670 !Config Key = BULK1671 !Config Desc = Bulk density (0-dim mode)1672 !Config Def = XXX1673 !Config If = IMPOSE_VEG and IMPOSE_SOIL1674 !Config Help = Determines the bulk density in the grid box. The bulk density1675 !Config is the weight of soil in a given volume.1676 !Config Units = [-]1677 CALL setvar_p (bulk, val_exp, 'BULK', bulk_default)1678 1613 1679 1614 !Config Key = SLOWPROC_HEIGHT … … 1788 1723 ENDIF 1789 1724 1725 1790 1726 !! 4.3 Dynamic irrigation map 1791 1727 ! If do_irrigation, it will look to the dynamical irrig. map in restart … … 1907 1843 IF (ALLOCATED (sandfraction)) DEALLOCATE (sandfraction) 1908 1844 IF (ALLOCATED (siltfraction)) DEALLOCATE (siltfraction) 1909 IF (ALLOCATED (bulk)) DEALLOCATE (bulk)1910 1845 IF (ALLOCATED (laimap)) DEALLOCATE (laimap) 1911 1846 IF (ALLOCATED (veget_max_new)) DEALLOCATE (veget_max_new) … … 2596 2531 END IF 2597 2532 2598 ! Assig gning the right values and giving a value where information was not found2533 ! Assigning the right values and giving a value where information was not found 2599 2534 DO ib=1,nbpt 2600 2535 IF (alaimap(ib) < min_sechiba) THEN … … 2996 2931 !>\BRIEF looks for nearest grid point on the fine map 2997 2932 !! 2998 !! DESCRIPTION : (definitions, functional, design, flags): 2999 !! 2933 !! DESCRIPTION : (definitions, functional, design, flags): 2934 !! 3000 2935 !! RECENT CHANGE(S): None 3001 2936 !! … … 3068 3003 !! 3069 3004 !>\BRIEF Interpolate the Zobler or Reynolds/USDA soil type map 3070 !! Read and interpolate soil bulk from file.3071 3005 !! 3072 3006 !! DESCRIPTION : (definitions, functional, design, flags): … … 3076 3010 !! and everything needed to read all maps and assign parameter values. 3077 3011 !! 3078 !! MAIN OUTPUT VARIABLE(S): ::soiltype, ::clayfraction, sandfraction, siltfraction , bulk3012 !! MAIN OUTPUT VARIABLE(S): ::soiltype, ::clayfraction, sandfraction, siltfraction 3079 3013 !! 3080 3014 !! REFERENCE(S) : Reynold, Jackson, and Rawls (2000). Estimating soil water-holding capacities … … 3085 3019 !! \n 3086 3020 !_ ================================================================================================================================ 3087 SUBROUTINE slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, nbpt, lalo, neighbours, resolution, contfrac, soilclass, clayfraction, sandfraction, siltfraction , bulk)3021 SUBROUTINE slowproc_soilt(njsc, ks, nvan, avan, mcr, mcs, mcfc, mcw, nbpt, lalo, neighbours, resolution, contfrac, soilclass, clayfraction, sandfraction, siltfraction) 3088 3022 3089 3023 USE interpweight … … 3127 3061 REAL(r_std), INTENT(out) :: sandfraction(nbpt) !! The fraction of sand (for SP-MIP) 3128 3062 REAL(r_std), INTENT(out) :: siltfraction(nbpt) !! The fraction of silt (for SP-MIP) 3129 REAL(r_std), INTENT(out) :: bulk(nbpt) !! Bulk density as used by STOMATE3130 3063 ! 3131 3064 ! … … 3155 3088 CHARACTER(LEN=80) :: spmipexp !! designing the number of sp-mip experiment 3156 3089 CHARACTER(LEN=80) :: unif_case !! designing the model of experiment 4 (sp_mip) 3157 REAL(r_std), DIMENSION(nbpt) :: abulkph !!Availability of the bulk and ph interpolation 3090 3158 3091 REAL(r_std) :: vmin, vmax !! min/max values to use for the 3159 3092 … … 3180 3113 !! `maskingtype') 3181 3114 CHARACTER(LEN=250) :: namemaskvar !! name of the variable to use to mask 3182 CHARACTER(LEN=80) :: fieldname !!name of the field read for the bulk density map3183 3115 INTEGER(i_std), DIMENSION(:), ALLOCATABLE :: vecpos 3184 3116 REAL(r_std) :: sgn !! sum of fractions excluding glaciers and ocean … … 3705 3637 IF ( (solt(ilf) .LE. nscm) .AND. (solt(ilf) .GT. 0) ) THEN 3706 3638 soilclass(ib,solt(ilf)) = textrefrac(ib,solt(ilf)) 3707 clayfraction(ib) = clayfraction(ib) + textfrac_table(solt(ilf),3) * &3639 clayfraction(ib) = clayfraction(ib) + textfrac_table(solt(ilf),3) * & 3708 3640 textrefrac(ib,solt(ilf)) 3709 3641 sandfraction(ib) = sandfraction(ib) + textfrac_table(solt(ilf),2) * & … … 3756 3688 3757 3689 ENDIF ! xios_interpolation 3758 3759 !!3760 !! Read and interpolate soil bulk and soil ph using IOIPSL or XIOS3761 !!3762 IF (ok_moyano_soilhumsat) THEN3763 IF (xios_interpolation) THEN3764 ! Read and interpolate using XIOS3765 3766 ! Check if the restart file for sechiba is read.3767 ! Reading of soilbulk and soilph with XIOS is only activated if restname==NONE.3768 IF (restname_in /= 'NONE') THEN3769 CALL ipslerr_p(3,'slowproc_soilt','soilbulk and soilph can not be read with XIOS if sechiba restart file exist', &3770 'Remove sechiba restart file and start again','')3771 END IF3772 3773 IF (printlev_loc>=3) WRITE (numout,*) 'slowproc_soilt:Read soilbulk and soilph with XIOS'3774 CALL xios_orchidee_recv_field('soilbulk', bulk)3775 ELSE3776 ! Read using IOIPSL and interpolate using aggregate tool in ORCHIDEE3777 IF (printlev_loc>=3) WRITE (numout,*) 'slowproc_soilt:Read soilbulk and soilph with IOIPSL'3778 !! Read soilbulk3779 3780 !Config Key = SOIL_BULK_FILE3781 !Config Desc = Name of file from which soil bulk should be read3782 !Config Def = soil_bulk_and_ph.nc3783 !Config If =3784 !Config Help =3785 !Config Units = [FILE]3786 3787 ! By default, bulk and ph is stored in the same file but they could be3788 ! separated if needed.3789 filename = 'soil_bulk_and_ph.nc'3790 CALL getin_p('SOIL_BULK_FILE',filename)3791 3792 variablename = 'soilbulk'3793 ! Name of the longitude and latitude in the input file3794 lonname = 'nav_lon'3795 latname = 'nav_lat'3796 vmin=0 ! not used in interpweight_2Dcont3797 vmax=0 ! not used in interpweight_2Dcont3798 3799 ! Should negative values be set to zero from input file?3800 nonegative = .FALSE.3801 ! Type of mask to apply to the input data (see header for more3802 ! details)3803 maskingtype = 'mabove'3804 ! Values to use for the masking3805 maskvals = (/ min_sechiba, undef_sechiba, undef_sechiba/)3806 ! Name of the variable with the values for the mask in the input file3807 ! (only if maskkingtype='var') ( not used)3808 namemaskvar = ''3809 ! Type of calculation of cell fractions3810 fractype = 'default'3811 3812 IF (printlev_loc >= 1) WRITE(numout,*) "slowproc_soilt: Read and interpolate " &3813 // TRIM(filename) // " for variable " // TRIM(variablename)3814 3815 3816 CALL interpweight_2Dcont(nbpt, 0, 0, lalo, resolution,neighbours, &3817 contfrac, filename, variablename, lonname, latname,vmin, vmax,nonegative, maskingtype, &3818 maskvals, namemaskvar, -1, fractype, bulk_default,undef_sechiba, &3819 bulk, abulkph)3820 WRITE(numout,*) 'bulk density map is read _______'3821 3822 3823 ENDIF ! xios_interpolation3824 ENDIF3825 3826 DO ib = 1, nbpt3827 njsc(ib) = MAXLOC(soilclass(ib,:),1)3828 ENDDO3829 3690 3830 3691 ! End of soil texture reading, for 'maps' and classical behavior … … 3957 3818 CALL xios_orchidee_send_field("interp_diag_njsc",REAL(njsc, r_std)) 3958 3819 CALL xios_orchidee_send_field("interp_diag_clayfraction",clayfraction) 3959 CALL xios_orchidee_send_field("interp_diag_bulk",bulk)3960 3820 CALL xios_orchidee_send_field("interp_diag_sandfraction",sandfraction) 3961 3821 CALL xios_orchidee_send_field("interp_diag_siltfraction",siltfraction) -
branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate.f90
r8418 r8423 644 644 rest_id_stom, hist_id_stom, hist_id_stom_IPCC, & 645 645 index, lalo, neighbours, resolution, & 646 contfrac, totfrac_nobio, clay, bulk,&647 temp_air, lai, veget, veget_max,&646 contfrac, totfrac_nobio, clay, temp_air, & 647 lai, veget, veget_max, & 648 648 deadleaf_cover, assim_param, temp_growth ) 649 649 … … 665 665 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: totfrac_nobio !! Fraction of grid cell covered by lakes, land ice, cities, ... (unitless) 666 666 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: clay !! Clay fraction of soil (0-1, unitless) 667 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: bulk !! Bulk density (kg/m**3)668 667 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: temp_air !! Air temperature at first atmospheric model layer (K) 669 668 REAL(r_std),DIMENSION(kjpindex,nvm),INTENT(in) :: lai !! Leaf area inex @tex $(m^2 m^{-2})$ @endtex … … 1189 1188 & (kjit, kjpij, kjpindex, & 1190 1189 & index, lalo, neighbours, resolution, contfrac, totfrac_nobio, clay, & 1191 & bulk,temp_air, temp_sol, stempdiag, &1192 & humrel, shumdiag, shumdiagSAT, litterhumdiag,litterhumdiagSAT, precip_rain, precip_snow, &1190 & temp_air, temp_sol, stempdiag, & 1191 & humrel, shumdiag, litterhumdiag, precip_rain, precip_snow, & 1193 1192 & gpp, deadleaf_cover, assim_param, & 1194 1193 & lai, frac_age, height, veget, veget_max, & … … 1226 1225 !! ice, cities, ... (unitless) 1227 1226 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: clay !! Clay fraction of soil (0-1, unitless) 1228 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: bulk !! Bulk density (kg/m**3)1229 1227 REAL(r_std),DIMENSION(kjpindex,nvm),INTENT(in) :: humrel !! Relative humidity ("moisture availability") 1230 1228 !! (0-1, unitless) … … 1233 1231 REAL(r_std),DIMENSION(kjpindex,nslm),INTENT(in) :: stempdiag !! Soil temperature (K) 1234 1232 REAL(r_std),DIMENSION(kjpindex,nslm),INTENT(in) :: shumdiag !! Relative soil moisture (0-1, unitless) 1235 REAL(r_std),DIMENSION(kjpindex,nslm),INTENT(in) :: shumdiagSAT !! Relative soil moisture (0-1, unitless)1236 !! with respect to(mcs-mcw)1237 1233 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: litterhumdiag !! Litter humidity (0-1, unitless) 1238 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: litterhumdiagSAT !! Litter humidity (0-1, unitless)1239 !! with respect to(tmc_litter_sat-tmc_litter_wilt)1240 1234 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: precip_rain !! Rain precipitation 1241 1235 !! @tex $(mm dt_stomate^{-1})$ @endtex … … 1375 1369 1376 1370 !_ ================================================================================================================================ 1377 1378 1371 1379 1372 !! 1. Initialize variables 1380 1373 … … 1494 1487 CALL littercalc (kjpindex, & 1495 1488 turnover_littercalc, bm_to_littercalc, & 1496 veget_cov_max, temp_sol, stempdiag, shumdiag, litterhumdiag, shumdiagSAT,litterhumdiagSAT,&1489 veget_cov_max, temp_sol, stempdiag, shumdiag, litterhumdiag, & 1497 1490 litterpart, litter, dead_leaves, lignin_struc, & 1498 1491 deadleaf_cover, resp_hetero_litter, & 1499 1492 soilcarbon_input_inst, control_temp_inst, control_moist_inst, & 1500 matrixA, vectorB , bulk, clay, carbon)1493 matrixA, vectorB) 1501 1494 1502 1495 ! Heterothropic litter respiration during time step ::dt_sechiba @tex $(gC m^{-2})$ @endtex … … 1558 1551 & (kjpindex, dt_days, & 1559 1552 & veget_cov, veget_cov_max, & 1560 & humrel_daily, t2m_daily, tsoil_daily, & 1561 & soilhum_daily, lalo, & 1553 & humrel_daily, t2m_daily, tsoil_daily, soilhum_daily, lalo, & 1562 1554 & precip_daily, npp_daily, biomass, & 1563 1555 & turnover_daily, gpp_daily, when_growthinit, & … … 1570 1562 & maxfpc_lastyear, maxfpc_thisyear, & 1571 1563 & humrel_month, humrel_week, t2m_longterm, tau_longterm, & 1572 & t2m_month, t2m_week, tsoil_month, soilhum_month, &1564 & t2m_month, t2m_week, tsoil_month, soilhum_month, & 1573 1565 & npp_longterm, turnover_longterm, gpp_week, & 1574 1566 & gdd_m5_dormance, gdd_midwinter, ncd_dormance, ngd_minus5, & … … 1592 1584 & clay, herbivores, & 1593 1585 & tsurf_daily, tsoil_daily, t2m_daily, t2m_min_daily, & 1594 & litterhum_daily, soilhum_daily, 1586 & litterhum_daily, soilhum_daily, & 1595 1587 & maxhumrel_lastyear, minhumrel_lastyear, & 1596 1588 & gdd0_lastyear, precip_lastyear, & … … 2021 2013 !_ ================================================================================================================================ 2022 2014 2023 SUBROUTINE stomate_finalize (kjit, kjpindex, index, clay, bulk,assim_param)2015 SUBROUTINE stomate_finalize (kjit, kjpindex, index, clay, assim_param) 2024 2016 2025 2017 IMPLICIT NONE … … 2031 2023 INTEGER(i_std),DIMENSION(kjpindex),INTENT(in) :: index !! Indices of the terrestrial pixels only (unitless) 2032 2024 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: clay !! Clay fraction of soil (0-1, unitless) 2033 REAL(r_std),DIMENSION(kjpindex),INTENT(in) :: bulk !! Bulk density (kg/m**3)2034 2025 REAL(r_std),DIMENSION(kjpindex,nvm,npco2),INTENT(in) :: assim_param !! min+max+opt temperatures (K) & vmax for photosynthesis 2035 2026 … … 2118 2109 dt_days, days_since_beg, & 2119 2110 ind, adapted, regenerate, & 2120 humrel_daily, gdd_init_date, litterhum_daily, &2111 humrel_daily, gdd_init_date, litterhum_daily, & 2121 2112 t2m_daily, t2m_min_daily, tsurf_daily, tsoil_daily, & 2122 2113 soilhum_daily, precip_daily, & -
branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate_io.f90
r8418 r8423 440 440 & .TRUE., litterhum_daily, 'gather', nbp_glo, index_g) 441 441 IF (ALL(litterhum_daily(:) == val_exp)) litterhum_daily(:) = zero 442 443 442 !- 444 443 t2m_daily(:) = val_exp … … 472 471 & .TRUE., soilhum_daily, 'gather', nbp_glo, index_g) 473 472 IF (ALL(soilhum_daily(:,:) == val_exp)) soilhum_daily(:,:) = zero 474 475 473 !- 476 474 precip_daily(:) = val_exp … … 606 604 & .TRUE., soilhum_month, 'gather', nbp_glo, index_g) 607 605 IF (ALL(soilhum_month(:,:) == val_exp)) soilhum_month(:,:) = zero 608 609 610 606 !- 611 607 ! 6 fire probability … … 997 993 CALL restget_p (rest_id_stomate, var_name, nbp_glo, nlitt , 1, itime, & 998 994 & .TRUE., litter(:,:,m,l,k), 'gather', nbp_glo, index_g) 999 IF (ok_moyano_soilhumsat)THEN 1000 IF (ALL(litter(:,:,m,l,k) == val_exp)) litter(:,:,m,l,k) = Litterini_Moyano 1001 ELSE 1002 IF (ALL(litter(:,:,m,l,k) == val_exp)) litter(:,:,m,l,k) = zero 1003 ENDIF 995 IF (ALL(litter(:,:,m,l,k) == val_exp)) litter(:,:,m,l,k) = zero 1004 996 ENDDO 1005 997 ENDDO … … 1021 1013 CALL restget_p (rest_id_stomate, var_name, nbp_glo, ncarb , 1, itime, & 1022 1014 & .TRUE., carbon(:,:,m), 'gather', nbp_glo, index_g) 1023 IF (ok_moyano_soilhumsat)THEN 1024 IF (ALL(carbon(:,:,m) == val_exp)) carbon(:,:,m) = Cini_Moyano 1025 ELSE 1026 IF (ALL(carbon(:,:,m) == val_exp)) carbon(:,:,m) = zero 1027 ENDIF 1015 IF (ALL(carbon(:,:,m) == val_exp)) carbon(:,:,m) = zero 1028 1016 ENDDO 1029 1017 !- … … 1701 1689 var_name = 't2m_daily' 1702 1690 CALL restput_p (rest_id_stomate, var_name, nbp_glo, 1, 1, itime, & 1703 1691 & t2m_daily, 'scatter', nbp_glo, index_g) 1704 1692 !- 1705 1693 var_name = 't2m_min_daily' 1706 1694 CALL restput_p (rest_id_stomate, var_name, nbp_glo, 1, 1, itime, & 1707 1695 & t2m_min_daily, 'scatter', nbp_glo, index_g) 1708 1696 !- 1709 1697 var_name = 'tsurf_daily' 1710 1698 CALL restput_p (rest_id_stomate, var_name, nbp_glo, 1, 1, itime, & 1711 1699 & tsurf_daily, 'scatter', nbp_glo, index_g) 1712 1700 !- 1713 1701 var_name = 'tsoil_daily' 1714 1702 CALL restput_p (rest_id_stomate, var_name, nbp_glo, nslm, 1, itime, & 1715 1703 & tsoil_daily, 'scatter', nbp_glo, index_g) 1716 1704 !- 1717 1705 var_name = 'soilhum_daily' -
branches/ORCHIDEE_2_2/ORCHIDEE/src_stomate/stomate_litter.f90
r8418 r8423 26 26 27 27 ! modules used: 28 USE xios_orchidee 28 29 29 USE ioipsl_para 30 30 USE stomate_data … … 180 180 turnover, bm_to_litter, & 181 181 veget_cov_max, tsurf, tsoil, soilhum, litterhum, & 182 soilhumSAT, litterhumSAT, &183 182 litterpart, litter, dead_leaves, lignin_struc, & 184 183 deadleaf_cover, resp_hetero_litter, & 185 184 soilcarbon_input, control_temp, control_moist, & 186 MatrixA, VectorB , bulk, clay, carbon)185 MatrixA, VectorB) 187 186 188 187 !! 0. Variable and parameter declaration … … 202 201 REAL(r_std), DIMENSION(npts,nslm), INTENT(in) :: soilhum !! Daily soil humidity of each soil layer 203 202 !! (unitless) 204 REAL(r_std), DIMENSION(npts,nslm), INTENT(in) :: soilhumSAT !! Daily soil humidity of each soil layer205 !! (unitless)206 203 REAL(r_std), DIMENSION(npts), INTENT(in) :: litterhum !! Daily litter humidity (unitless) 207 REAL(r_std), DIMENSION(npts), INTENT(in) :: litterhumSAT !! Daily litter humidity (unitless)208 REAL(r_std), DIMENSION(npts), INTENT(in) :: clay !! Clay fraction (unitless, 0-1)209 REAL(r_std), DIMENSION(npts),INTENT(in) :: bulk !! Bulk density (kg/m**3)210 REAL(r_std), DIMENSION(npts,ncarb,nvm), INTENT(in) :: carbon !! Soil carbon pools: active, slow, or passive, \f$(gC m^{2})$\f211 204 212 205 !! 0.2 Output variables … … 268 261 REAL(r_std), DIMENSION(npts) :: soilhum_decomp !! Humidity used for decompostition in soil 269 262 !! (unitless) 270 REAL(r_std), DIMENSION(npts) :: soilhumSAT_decomp !! Humidity used for decompostition in soil271 !! (unitless) for Moyano et al 2012272 263 REAL(r_std), DIMENSION(npts) :: fd !! Fraction of structural or metabolic litter 273 264 !! decomposed (unitless) … … 594 585 595 586 !! 4.1 above the ground: litter humidity 596 597 IF (ok_moyano_soilhumsat)THEN !!ok_moyano_soilhumsat is true 598 control_moist(:,iabove) = control_moist_func (npts,clay,bulk,carbon, litter ,litterhumSAT, veget_cov_max) 599 ELSE !ok_moyano_soilhumsat is false by default 600 control_moist(:,iabove) = control_moist_func (npts,clay,bulk,carbon, litter, litterhum, veget_cov_max) 601 ENDIF 602 603 CALL xios_orchidee_send_field("ControlMoistLitter",control_moist(:,iabove)) 604 CALL xios_orchidee_send_field("litterhumSAT",litterhumSAT(:)) 587 control_moist(:,iabove) = control_moist_func (npts, litterhum) 588 605 589 ! 606 590 !! 4.2 below: convolution of humidity and decomposer profiles … … 612 596 !! 4.2.2 integrate over the nslm levels 613 597 soilhum_decomp(:) = zero 614 soilhumSAT_decomp(:) = zero 615 616 IF (ok_moyano_soilhumsat)THEN !!ok_moyano_soilhumsat is true 617 DO l = 1, nslm !Loop over soil levels 618 soilhumSAT_decomp(:) = & 619 soilhumSAT_decomp(:) + soilhumSAT(:,l) * rpc(:) * & 620 ( EXP( -z_soil(l-1)/z_decomp ) - EXP( -z_soil(l)/z_decomp ) ) 621 ENDDO 622 control_moist(:,ibelow) = control_moist_func (npts,clay,bulk,carbon, litter, soilhumSAT_decomp,veget_cov_max) 623 624 ELSE !ok_moyano_soilhumsat is false by default 625 DO l = 1, nslm !Loop over soil levels 626 627 soilhum_decomp(:) = & 628 soilhum_decomp(:) + soilhum(:,l) * rpc(:) * & 629 ( EXP( -z_soil(l-1)/z_decomp ) - EXP( -z_soil(l)/z_decomp ) ) 630 ENDDO 631 control_moist(:,ibelow) = control_moist_func (npts,clay,bulk,carbon, litter, soilhum_decomp,veget_cov_max) 632 ENDIF 633 634 CALL xios_orchidee_send_field("ControlMoistSoil",control_moist(:,ibelow)) 635 CALL xios_orchidee_send_field("soilhumSAT",soilhumSAT_decomp(:)) 598 599 DO l = 1, nslm !Loop over soil levels 600 601 soilhum_decomp(:) = & 602 soilhum_decomp(:) + soilhum(:,l) * rpc(:) * & 603 ( EXP( -z_soil(l-1)/z_decomp ) - EXP( -z_soil(l)/z_decomp ) ) 604 605 ENDDO 606 607 control_moist(:,ibelow) = control_moist_func (npts, soilhum_decomp) 636 608 637 609 !! 5. fluxes from litter to carbon pools and respiration … … 906 878 !_ ================================================================================================================================ 907 879 908 FUNCTION control_moist_func (npts, clay,bulk,carbon,litter,moist_in,veget_cov_max) RESULT (moistfunc_result)880 FUNCTION control_moist_func (npts, moist_in) RESULT (moistfunc_result) 909 881 910 882 !! 0. Variable and parameter declaration 911 883 912 884 !! 0.1 Input variables 913 INTEGER(i_std) :: k,m,n,i,l,e !!indices885 914 886 INTEGER(i_std), INTENT(in) :: npts !! Domain size - number of grid pixel (unitless) 915 887 REAL(r_std), DIMENSION(npts), INTENT(in) :: moist_in !! relative humidity (unitless) 916 REAL(r_std), DIMENSION(npts), INTENT(in) :: clay !! Clay fraction (unitless, 0-1) 917 REAL(r_std), DIMENSION(npts), INTENT(in) :: bulk !! Bulk density (kg/m**3) 918 REAL(r_std), DIMENSION(npts,ncarb,nvm), INTENT(in) :: carbon !! Soil carbon pools: active, s low, or passive, \f$(gC m^{2})$\f 919 REAL(r_std), DIMENSION(npts,nlitt,nvm,nlevs,nelements), INTENT(inout) ::litter !! Metabolic and structural litter,above and 920 !! below ground. The unit is given by m^2 of ground 921 !! @tex $(gC m^{-2})$ @endtex 922 REAL(r_std),DIMENSION(npts,nvm),INTENT(in):: veget_cov_max !! PFT "Maximal" coverage fraction of a PFT 923 888 924 889 !! 0.2 Output variables 925 890 … … 929 894 930 895 !! 0.4 Local variables 931 REAL(r_std), DIMENSION(101) :: Mint !! range [0,0.01,1] to compute PRSRmax 932 REAL(r_std), DIMENSION(npts,101) :: PRSR !! Proportional Response of Soil Respiration 933 REAL(r_std), DIMENSION(npts,101) :: SR !! Soil respiration compute using Moyano et al 2012 procedure 934 REAL(r_std) :: SRmax !! maximum value of SR 935 REAL(r_std), DIMENSION(npts,101) :: SRnorm !! SR normalized by the SRmax 936 REAL(r_std) :: ind !! i index of maximum SRnorm value 937 REAL(r_std) :: SRmin !! minimum value of SRnorm 938 REAL(r_std), DIMENSION(npts,101) :: SRsc !! Soil respiration rescale between 0 and 1 following Moyano et al 2012 procedure 939 REAL(r_std) :: SRscmax !! maximum value of SRsc 940 REAL(r_std) :: indmc !! i index of maximum mois_round values 941 REAL(r_std) :: moist_round !! moist_in round to 2decimal points 942 REAL(r_std), DIMENSION(npts) :: carbon_gCgs !! total Soil carbon pools: active +slow+ passive, (gC/gsoil) 943 REAL(r_std), DIMENSION(npts) :: carbon_gCm2s !! total Soil carbon pools: active +slow+ passive , (gC/gsoil) 944 REAL(r_std), DIMENSION(npts) :: clay_Moyano !! Clay fraction borned within the values used by Moyano et al., (unitless, 0-1) 945 946 !_ =============================================================================================================================== 947 948 IF (ok_moyano_soilhumsat)THEN !!ok_moyano_soilhumsat is true 949 950 !! In ok_moyano_soilhumsat total soil carbon per grid cells need to be computed and 951 !! converted from gC/m2soil to gC/gsoil 952 carbon_gCm2s(:)=zero 953 carbon_gCgs(:)=zero 954 DO n = 1, npts ! loop over grids 955 DO m = 1, nvm ! Loop over # PFTs 956 DO k = 1, ncarb ! Loop over carbon pools 957 carbon_gCm2s(n)=carbon_gCm2s(n)+carbon(n,k,m)*veget_cov_max(n,m) 958 ENDDO 959 ENDDO 960 ENDDO 961 962 IF (ok_orga) THEN 963 DO n = 1, npts ! loop over grids 964 carbon_gCgs(n)=carbon_gCm2s(n) / (bulk(n) * 1E3 * soilheight) 965 carbon_gCgs(n)= MAX(min_carbon_moyano,MIN(max_carbon_moyano,carbon_gCgs(n))) 966 clay_Moyano(n) = MAX(min_clay_moyano,MIN(max_clay_moyano,clay(n))) 967 ENDDO 968 969 !!1. compute Max(Prsr(M[0,0.01,1])); Prsr:Proportional Response of Soil 970 !!Respiration (PRSR) and Soil respiration(SR): SR(M)=SRo x Prsr(M)/Max(Prsr(M[0,0.01,1])) 971 !! M:soilhumSAT, SRo=1 (arbitrary) 972 DO n = 1,npts 973 Mint(:)= zero 974 SRmax = zero 975 DO i = 1,101 976 Mint(i)=0.01*(i-1) 977 IF (carbon_gCgs(n) .LT. limit_carbon_orga) THEN 978 PRSR(n,i) = beta1 * Mint(i) + beta2 * Mint(i)**2.0 + beta3 * Mint(i)**3.0 & 979 & + beta4 * clay_Moyano(n) + beta5 * clay_Moyano(n) * Mint(i) & 980 & + beta6 * carbon_gCgs(n) + intercept 981 ELSE 982 PRSR(n,i) = beta1_orga * Mint(i) + beta2_orga * Mint(i)**2.0 + & 983 & beta3_orga * Mint(i)**3.0 + intercept_orga 984 ENDIF 985 986 IF (i.LT.2) THEN 987 SR(n,i) = PRSR(n,i) 988 SRmax = MAX(SR(n,i),SRmax) 989 ELSE 990 SR(n,i) = PRSR(n,i) * SR(n,i-1) 991 SRmax = MAX(SR(n,i),SRmax) 992 ENDIF 993 ENDDO 994 SRnorm(n,:)= SRo * SR(n,:)/SRmax 995 ENDDO 996 ELSE 997 DO n = 1, npts ! loop over grids 998 carbon_gCgs(n)=carbon_gCm2s(n) / (bulk(n) * 1E3 * soilheight) 999 carbon_gCgs(n)= MAX(min_carbon_moyano,MIN(limit_carbon_orga,carbon_gCgs(n))) 1000 clay_Moyano(n) = MAX(min_clay_moyano,MIN(max_clay_moyano,clay(n))) 1001 ENDDO 1002 1003 !!1. compute Max(Prsr(M[0,0.01,1])); Prsr:Proportional Response of Soil 1004 !!Respiration (PRSR) and Soil respiration(SR): SR(M)=SRo x 1005 !Prsr(M)/Max(Prsr(M[0,0.01,1])) 1006 !! M:soilhumSAT, SRo=1 (arbitrary) 1007 DO n = 1,npts 1008 Mint(:)= zero 1009 SRmax = zero 1010 DO i = 1,101 1011 Mint(i)=0.01*(i-1) 1012 PRSR(n,i) = beta1 * Mint(i) + beta2 * Mint(i)**2.0 + beta3 * Mint(i)**3.0 & 1013 & + beta4 * clay_Moyano(n) + beta5 * clay_Moyano(n) * Mint(i) & 1014 & + beta6 * carbon_gCgs(n) + intercept 1015 1016 IF (i.LT.2) THEN 1017 SR(n,i) = PRSR(n,i) 1018 SRmax = MAX(SR(n,i),SRmax) 1019 ELSE 1020 SR(n,i) = PRSR(n,i) * SR(n,i-1) 1021 SRmax = MAX(SR(n,i),SRmax) 1022 ENDIF 1023 ENDDO 1024 SRnorm(n,:)= SRo * SR(n,:)/SRmax 1025 ENDDO 1026 ENDIF 1027 1028 !!2. Rescale SR values between 0 and 1 and defined SR for moist_in 1029 DO n = 1,npts 1030 ind = 1.0 1031 indmc = zero 1032 moist_round = zero 1033 SRscmax = zero 1034 SRsc(n,:) = zero 1035 SRmin = 1.0 1036 1037 ind = MAXLOC(SRnorm(n,:),1) 1038 DO i = 1,ind 1039 SRmin = MIN(SRnorm(n,i),SRmin) 1040 ENDDO 1041 DO i = 1,101 1042 SRsc(n,i) = SRnorm(n,i)- SRmin 1043 IF (i.LE.ind)THEN 1044 SRscmax = MAX(SRsc(n,i),SRscmax) 1045 ENDIF 1046 ENDDO 1047 SRsc(n,:)=SRsc(n,:)/SRscmax 1048 1049 moist_round=(NINT(moist_in(n)*100.))/100. 1050 indmc=INT(moist_round/0.01) + un 1051 1052 moistfunc_result(n) = SRsc(n,indmc) 1053 moistfunc_result(n) = MAX( moistcontSAT_min, MIN( un, moistfunc_result(n) )) 1054 ENDDO 1055 1056 ELSE !ok_moyano_soilhumsat is false by default 1057 moistfunc_result(:) = -moist_coeff(1) * moist_in(:) * moist_in(:) & 1058 & + moist_coeff(2)* moist_in(:) - moist_coeff(3) 1059 moistfunc_result(:) = MAX( moistcont_min, MIN( un, moistfunc_result(:) )) 1060 ENDIF 896 897 !_ ================================================================================================================================ 898 899 moistfunc_result(:) = -moist_coeff(1) * moist_in(:) * moist_in(:) + moist_coeff(2)* moist_in(:) - moist_coeff(3) 900 moistfunc_result(:) = MAX( moistcont_min, MIN( un, moistfunc_result(:) ) ) 1061 901 1062 902 END FUNCTION control_moist_func -
branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/context_input_orchidee.xml
r8418 r8423 30 30 <field id="soilcolor" name="soilcolor" domain_ref="dom_file_soil" operation="instant" freq_offset="1ts" enabled="false"/> 31 31 <field id="soiltext" name="soiltext" domain_ref="dom_file_soil" operation="instant" freq_offset="1ts"/> 32 </file>33 34 <!-- Default file name: soil_bulk_and_ph.nc for both soilbulk and soilph. The variables can be read from different files, specified in run.def35 This file is read in the initialization phase only if there is no restart file.36 For soilbulk and soilph, set values lower than min_sechiba as masked values because missing values are zero in the file.37 Renormalization will be done later using the interpolated mask. -->38 <file id="soilbulk_file" mode="read" output_freq="1y" enabled="true">39 <field id="soilbulk_mask_read" name="soilbulk" domain_ref="dom_file_soilbulk" operation="instant" freq_offset="1ts" > this > $min_sechiba ? 1 : 0 </field>40 <field id="soilbulk_read" name="soilbulk" domain_ref="dom_file_soilbulk" operation="instant" freq_offset="1ts" > this > $min_sechiba ? this : 0 </field>41 32 </file> 42 33 … … 143 134 <field id="soiltext13" > soiltext == 13 </field> 144 135 </field_group> 145 146 <!-- If soilbulk_mask .gt. min_sechiba, then renormalize by dividing with soilbulk_mask else set bulk_default.147 soilbulk_mask interpolated to the model grid corresponds to the fraction of the grid cell covered by non-masked148 values in the input file. Where soilbulk_mask=0, no data where found on the source grid. -->149 <field id="soilbulk_tmp" field_ref="soilbulk_read" domain_ref="dom_from_soilbulk" />150 <field id="soilbulk_mask" field_ref="soilbulk_mask_read" domain_ref="dom_from_soilbulk" read_access="true" enabled="true" />151 <field id="soilbulk" field_ref="soilbulk_tmp" domain_ref="dom_from_soilbulk" read_access="true" enabled="true" > soilbulk_mask > $min_sechiba ? soilbulk_tmp/(soilbulk_mask+1e-100) : $bulk_default </field>152 136 153 137 <field id="frac_veget" field_ref="maxvegetfrac_read" domain_ref="dom_from_pft" read_access="true" enabled="true" /> … … 236 220 </domain> 237 221 238 <domain id="dom_from_soilbulk" domain_ref="domain_landpoints">239 <interpolate_domain order="1" renormalize="false" />240 </domain>241 242 222 <domain id="dom_from_pft" domain_ref="domain_landpoints"> 243 223 <interpolate_domain order="1" renormalize="false" /> … … 278 258 <!-- generate_rectilinear_domain bounds_lon_start="-180" bounds_lon_end="180" bounds_lat_start="-90" bounds_lat_end="90"/--> 279 259 <generate_rectilinear_domain bounds_lon_start="-180" bounds_lon_end="180" bounds_lat_start="90" bounds_lat_end="-90"/> 280 </domain>281 282 <domain id="dom_file_soilbulk" type="rectilinear">283 <generate_rectilinear_domain bounds_lon_start="-180" bounds_lon_end="180" bounds_lat_start="90" bounds_lat_end="-90"/>/>284 260 </domain> 285 261 … … 370 346 <variable id="albbg_vis_default" type="double">xxx</variable> 371 347 <variable id="albbg_nir_default" type="double">xxx</variable> 372 <variable id="bulk_default" type="double">xxx</variable>373 348 374 349 </variable_definition> -
branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/field_def_orchidee.xml
r8418 r8423 358 358 <field id="gpplut" name="gppLut" long_name="Gross primary productivity on Landuse tiles" unit="kgC m-2 s-1" grid_ref="grid_nlut" /> 359 359 360 360 361 <!-- Varaibles interp_diag_xxx and interp_avail_xxx are written just after reading and interpolating from file and are used for validation --> 361 362 <field id="interp_avail_aveget" name="interp_avail_aveget" long_name="Availability of data for the vegetation fraction interpolation (negative values if no data found)" unit="1" operation="once" freq_offset="0ts"/> … … 365 366 <field id="interp_diag_soilclass" name="interp_diag_soilclass" grid_ref="grid_nscm" long_name="soilclass read from soils_param file" operation="once" freq_offset="0ts"/> 366 367 <field id="interp_diag_njsc" name="interp_diag_njsc" long_name="njsc after reading of soilclass from soils_param file" operation="once" freq_offset="0ts"/> 367 <field id="interp_diag_bulk" name="interp_diag_bulk" long_name="Soil bulk density read from file" unit="kg/m**3" operation="once" freq_offset="0ts"/>368 368 <field id="interp_diag_clayfraction" name="interp_diag_clayfraction" long_name="clayfraction read from soils_param file" operation="once" freq_offset="0ts" /> 369 369 <field id="interp_diag_sandfraction" name="interp_diag_sandfraction" long_name="sandfraction read from soils_param file" operation="once" freq_offset="0ts" /> … … 636 636 <field id="vegetmax_soil" name="vegetsoil" long_name="PFT fraction for soil tiles" unit="1" grid_ref="grid_nvm_nstm"/> 637 637 638 <!-- Output variables for Moyano et al. 2012 control humidity function -->639 <field id="ControlMoistLitter" name="ControlMoistLitter" long_name="Controle moist value for iabove" unit="1" grid_ref="grid_landpoints" />640 <field id="ControlMoistSoil" name="ControlMoistSoil" long_name="Controle moist value for ibelow" unit="1" grid_ref="grid_landpoints"/>641 <field id="litterhumSAT" name="litterhumSAT" long_name="litter moisture for the controle moisture fonction" unit="1" grid_ref="grid_landpoints"/>642 <field id="soilhumSAT" name="soilhumSAT" long_name="soil moisture for the control moisture fonction" unit="1" grid_ref="grid_landpoints"/>643 644 638 </field_definition> 645 639 -
branches/ORCHIDEE_2_2/ORCHIDEE/src_xml/file_def_orchidee.xml
r8418 r8423 991 991 <field field_ref="nppOther" level="1"/> 992 992 <field field_ref="nep" level="0"/> 993 <!-- variables for Moyano control moisture -->994 <field field_ref="ControlMoistLitter" level="1"/>995 <field field_ref="ControlMoistSoil" level="1"/>996 <field field_ref="litterhumSAT" level="1"/>997 <field field_ref="soilhumSAT" level="1"/>998 999 993 </field_group> 1000 994
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