Changes between Version 5 and Version 6 of DevelopmentActivities/ORCHIDEE-MICT-IMBALANCE-P/knownissues

Timestamp:

2016-11-10T09:35:09+01:00 (7 years ago)

Author:

ajornet

Comment:

--

DevelopmentActivities/ORCHIDEE-MICT-IMBALANCE-P/knownissues

@@ -1 +1 @@
 = Known Issues =
+
+== XIOS (obelix) ==
+
+10/11/2016 Some people have found an issue when compiling XIOS in obelix. The error message is normally like this:
+
+Error message:
+{{{
+
+mpif90 -nofor-main -o xios_server.exe /home/users/yhuang/modipsl/modeles/XIOS/obj/server_main.o -L/home/users/yhuang/modipsl/modeles/XIOS/lib -l__fcm__xios_server -L/usr/local/install/netcdf-4.3.2p/lib -L/usr/local/install/hdf5-1.8.9p/lib -lnetcdf -lnetcdff -lhdf5_hl -lhdf5 -lhdf5 -lz -lcurl /usr/local/install/openmpi-1.6.5/lib
+-lstdc++
+
+ipo: warning #11010: file format not recognized for /usr/local/install/openmpi-1.6.5/lib
+
+/usr/local/install/openmpi-1.6.5/lib: file not recognized: Is a directory
+
+fcm_internal load failed (256)
+
+gmake: *** [xios_server.exe] Error 1
+
+gmake -f /home/users/yhuang/modipsl/modeles/XIOS/Makefile -j 1 all failed (2) at /home/users/yhuang/modipsl/modeles/XIOS/tools/FCM/bin/../lib/Fcm/Build.pm line 597
+}}}
+
+Fix:
+{{{
+[ajornet@obelix2 XIOS]$ svn diff
+Index: make_xios
+===================================================================
+--- make_xios    (revision 858)
++++ make_xios    (working copy)
+@@ -157,7 +157,7 @@
+XIOS_CINCDIR="$NETCDF_INCDIR $HDF5_INCDIR $MPI_INCDIR"
+XIOS_FINCDIR="$NETCDF_INCDIR $XIOS_FINCDIR $MPI_INCDIR"
+ 
+-XIOS_LIB="$XIOS_LIB $NETCDF_LIBDIR $HDF5_LIBDIR $MPI_LIBDIR $NETCDF_LIB $HDF5_LIB $MPI_LIB"
++XIOS_LIB="$XIOS_LIB $NETCDF_LIBDIR $HDF5_LIBDIR $MPI_LIBDIR $NETCDF_LIB $HDF5_LIB -L$MPI_LIB -lnetcdff"
+ 
+rm -f config.fcm
+echo "%COMPIL_CFLAGS $COMPIL_CFLAGS" >> config.fcm
+Index: arch/arch-ifort_LSCE.path
+===================================================================
+--- arch/arch-ifort_LSCE.path    (revision 858)
++++ arch/arch-ifort_LSCE.path    (working copy)
+@@ -1,6 +1,6 @@
+-NETCDF_INCDIR="-I /usr/local/install/netcdf-4.3.2p/include"
++NETCDF_INCDIR="-I/usr/local/install/netcdf-4.3.2p/include"
+NETCDF_LIBDIR="-L/usr/local/install/netcdf-4.3.2p/lib"
+NETCDF_LIB="-lnetcdf"
+-HDF5_INCDIR="-I /usr/local/install/hdf5-1.8.9p/include"
++HDF5_INCDIR="-I/usr/local/install/hdf5-1.8.9p/include" 
+HDF5_LIBDIR="-L/usr/local/install/hdf5-1.8.9p/lib"
+HDF5_LIB="-lhdf5_hl -lhdf5 -lhdf5 -lz -lcurl"
+}}}
+
+Added: 10/11/2016
 
 == ADA ==