Changes between Version 7 and Version 8 of Documentation/UserGuide/FLUXNETValidation

Timestamp:

2018-12-14T16:31:20+01:00 (5 years ago)

Author:

mmcgrath

Comment:

Trying to get FLUXNET sites working with new CN-CAN config

Documentation/UserGuide/FLUXNETValidation

@@ -69 +69 @@
 Some things to watch out for with ORCHIDEE-CN-CAN: best to use a run.def with no age classes (for easier comparison) and no forest management.
 
-It seems that AUTO values are not being removed in the run.def during processing.  I set XIOS\_ORCHIDEE\_OK=N, DRIVER\_reset\_time=y, taking values from a previous successful run I did (looking in the RUN\_DIR).  I only replaced a value when the code crashed with a complaint.
-
-{{{
-RESTART_FILEIN= NONE
-SECHIBA_restart_in= NONE
-STOMATE_RESTART_FILEIN= NONE
-}}}
+It seems the scripts expect somethings in sechiba.card, as well.  I had to add the following lines to SPINUP/SUBJOB/OOL_SEC_STO/COMP/sechiba.card, under the UserChoices section:
+
+{{{
+ROUTING=n
+NEWHYDROL=y
+LAIMAP=n
+IMPOSE_VEG=n
+LAND_USE=n
+OKCO2=y
+CO2varying=n
+}}}
+
+And the following section:
+{{{
+[Post_1M_sechiba_history]
+Patches = ()
+GatherWithInternal= (lon, lat, veget, time_counter, time_counter_bnds, Areas, Contfrac)
+TimeSeriesVars2D = (nobiofrac, alb_nir, alb_vis, bqsb, evap, fluxlat, fluxsens, gqsb, netrad, qair, rain, runoff, snow, snownobio, snowf, subli, tair, temp_sol, tsol_max, tsol_min, drainage,mrsos, mrso, mrros, mrro, prveg, evspsblveg, evspsblsoi, tran, treeFrac, grassFrac, cropFrac, baresoilFrac, residualFrac)
+TimeSeriesVars3D = (lai, maxvegetfrac, vegetfrac, ptn, nee)
+}}}
+
+And something similar in SPINUP/SUBJOB/OOL_SEC_STO/COMP/stomate.card
+{{{
+[Post_1M_stomate_history]
+Patches= ()
+GatherWithInternal= (lon, lat, PFT, time_counter, Areas)
+TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
+ChunckJob2D = NONE
+TimeSeriesVars3D= (CO2FLUX,LAI,VEGET_MAX,NPP,GPP,HET_RESP,MAINT_RESP,GROWTH_RESP,AGE,HEIGHT,TOTAL_M,TOTAL_BM_LITTER,TOTAL_SOIL_CARB,ADAPTATION,REGENERATION)
+}}}
+
+It seems the scripts expect somethings in orchidee_ol.card, as well.  I had to add the following lines to SPINUP/SUBJOB/OOL_SEC_STO/COMP/orchidee_ol.card, under the UserChoices section:
+
+{{{
+XIOS=n
+NORESTART=n
+TIMELENGTH=y
+}}}
+
+Since we are not using XIOS, I removed the following in 
+
+{{{
+        (${SUBMIT_DIR}/PARAM/iodef.xml, .)   ,\
+}}}
+
+It seems that AUTO values are not being removed in the run.def during processing.  I set XIOS\_ORCHIDEE\_OK=__AUTO__, DRIVER\_reset\_time=y, taking values from a previous successful run I did (looking in the RUN\_DIR).  I only replaced a value when the code crashed with a complaint.
 
 I removed the following lines from ENSEMBLE/PARAM/run.def, since those variables didn't appear anywhere in the working config directories for the TRUNK.  
@@ -90 +129 @@
 }}}
 
-Even though the next ones weren't in the TRUNK run.def, I assigned a value since I don't like the default.
-{{{
-STOMATE_OK_STOMATE=y
+The following needs to be set to AUTO, else we get complaints when libIGCM tries to set them.
+{{{
+STOMATE_RESTART_FILEIN=__AUTO__
+STOMATE_OK_STOMATE=__AUTO__
+SECHIBA_restart_in=__AUTO__
+XIOS_ORCHIDEE_OK=__AUTO__
+RESTART_FILEIN=__AUTO__
 }}}