Changes between Version 63 and Version 64 of WikiStart


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Timestamp:
2011-11-10T18:19:18+01:00 (12 years ago)
Author:
nvuilsce
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  • WikiStart

    v63 v64  
    1 = Maintenance Site for ORCHIDEE = 
    2 Last change : 2010-11-09 
     1||[wiki:Documentation Documentation]||[wiki:Configurations Configurations]||[wiki:Tags Main Version]||[wiki:Branches Other Versions]||[wiki:Evaluation Evaluation]||[wiki:Reports Reports]||[wiki:Meetings Meetings]||[wiki:Contact Contact]||[[BR]] 
    32[[BR]] 
     3= Wiki of ORCHIDEE model = 
    44 
    5 [[TOC(WikiStart, TechnicalReports, LandUse, OrchideeStics, ParallelVersion, SpinUpJobs, FluxnetValidation, WorkViovy, WorkObelix, AssimilationWork, ExternalisationParameters, DocScripts, SubVersion, ForestryWork, VegetMap, ValidateOrchidee )]] 
    6 DocScripts 
    7 == Description == 
     5This wiki aims at gathering information on ORCHIDEE model. Information is related to model and code documentation, main configurations under which ORCHIDEE model can be ran and description of the Tags and Branches of development. Evaluation results will be presented her,  
     6as well. Last, through this wiki, you will get access to the report of the ORCHIDEE meetings and the presentations given at the different ORCHIDEE seminars. 
    87 
    9 The wiki is the "informatic site" for ORCHIDEE. 
    10 Please visit official Orchidee site : http://orchidee.ipsl.jussieu.fr/ [[BR]] 
    11 CVS TREE (with password) : http://forge.ipsl.jussieu.fr/orchidee/viewvc/?root=orchidee [[BR]] 
    12 SVN TREE : see  
    13  * https://forge.ipsl.jussieu.fr/orchidee/browser or "Browse Source" tab. 
    14  * http://forge.ipsl.jussieu.fr/orchidee/viewvc/?root=orchidee-svn 
    15 MODIPSL beginner : http://forge.ipsl.jussieu.fr/igcmg/wiki/ModipslBeginner 
     8---- 
    169 
    17 ORCHIDEE is the new land-surface scheme of the IPSL. This scheme is the result of the coupling of [[BR]] 
    18 the SECHIBA land-surface scheme, which is dedicated to the surface energy and water balances, and [[BR]] 
    19 the carbon and vegetation model STOMATE. As the model goes into the production phase we will have [[BR]] 
    20 more time to dedicate to the documentation and this Web page. 
     10'''''Latest News''''' 
    2111 
    22 All users of orchidee.ipsl.jussieu.fr will be editors in this site. 
     12 *  A little Retreat during 1.5 or 2 days will be organised in the coming months in order primarily to build a complete Documentation of the model. The objective is to gather altogether in an isolated place (probably in Saint Remy les Chevreuse) with one night there and to work on a complete, not static (i.e. included in the routines) documentation. It will be handle by DOXYGEN software. Additionally we will have a specific scientific discussion around a proposed new Energy balance scheme (multi-layer). Each participant will have to prepare before the meeting some text to document one or few routines (more details will follow soon). '''You are all welcome to participate''' (all fees except travel will be covered). Please contact P. Peylin for additional information 
    2313 
    24 == Work in progress == 
     14 *  Since few months, ORCHIDEE code is managed using Subversion software. It is a very useful tool which helps you also to manage your own ORCHIDEE code. With Subversion, you can for instance, see the history of your changes in your code and backup your code in a secure way. We plan to organize a Subversion course for ORCHIDEE users very soon at LSCE, Orme (probably in the room 100). The course will be in English and for phd students, post-doc and  advisors.  Other people involved in ORCHIDEE are welcome. It will last 2 to 3 hours approximately. No prerequisitives except basic linux commands.  Please contact D. Solyga for additional information 
    2515 
    26 Developpement tree of ORCHIDEE model for june 2011 (see [http://forge.ipsl.jussieu.fr/orchidee/raw-attachment/wiki/ProjectReports/reunion_ORC_30_juin.pdf reunion_ORC_30_juin.pdf]): [[BR]] 
    27 [[Image(arbre_SVN.png, 600px)]] 
     16---- 
    2817 
    29 OrchideeDocumentation using Doxygen to prepare the scientific and technical documentation  
    30  
    31 ForestryWork work on a new Forestry and isotope model of Valentin Belassem and Thomas Eglin   
    32  
    33 Report of ORCHIDEE-PROJECT meetings are in ProjectReports 
    34  
    35 Report of technical meetings are in TechnicalReports 
    36  
    37 ORCHIDEE SRE (System Running Environment) course is in attachment http://dods.ipsl.jussieu.fr/orchidee/COURS/Cours-ORCHIDEE-oct2011.pdf.  
    38  
    39 Land Use managment is describe on this LandUse page. 
    40  
    41 Informations on ORCHIDEE coupled with STICS code is described in OrchideeStics.  
    42  
    43 See also ParallelVersion of ORCHIDEE page. 
    44  
    45 See SpinUpJobs page for documentation on spin-up procedure for ORCHIDEE.  
    46  
    47 See ReportDgvm page for report on update of the Vegetation Dynamic module.  
    48  
    49 See FluxnetValidation page for documentation on FLUXNET validation job. 
    50  
    51 Nicolas Viovy works in progress in this page : WorkViovy 
    52  
    53 Working on obelix here WorkObelix 
    54  
    55 Working with Assimilation Team in AssimilationWork 
    56  
    57 Work on externalisation : ExternalisationParameters 
    58  
    59 Working on acceleration of the spin-up : AccelerationSpinup 
    60  
    61 Work on the "cleaning" of ORCHIDEE (version 2.0): CleanOrchidee 
    62  
    63 CMIP5 METAFOR MetaforOrc questions. 
    64  
    65 == Some news == 
    66  
    67 Documentation of ORCHIDEE_OL scripts [wiki:DocScripts here]. 
    68  
    69 SVN server is OK on forge !! see SubVersion page for all commands. 
    70  
    71 VegetMap page describes different ORCHIDEE maps for vegetation (veget_max) and different versions. 
    72  
    73 ValidateOrchidee page has been created ! A lot of simulations from Nathalie De Noblet, Rachid Benshila, Martial Mancip and Patricia Cadule 
    74 have been referenced and pointed. Please have a look ! 
    75  
    76  
    77 Download modipsl/util/mod.def ORCHIDEE_OL1_9_MERGE model : new official version [[BR]]  
    78 driver OOL_1_9_4 TAG is now avaible ! [[BR]] 
    79 orchidee_1_9_4 TAG is now avaible ! [[BR]] 
    80 You can use last modipsl version to get it with ORCHIDEE_OL1_9_MERGE configuration. 
    81  
    82 For so-called "MERGE" or "Shilong" version (13 PFTs in STOMATE) : 
    83   - The sequential (not parallelized) version has been Taged : 
    84     * for standard driver, it is OOL_1_8_2_MERGE tag. 
    85     * for ORCHIDEE source, it is orchidee_1_8_2 tag. 
    86  
    87   - The last "classical" (in sense of 12 PFTs in STOMATE) but parallel version is 
    88     * for the driver and new scripts OOL_1_9_2 
    89     * for ORCHIDEE source orchidee_1_9_3 with some corrections and new restart (not by default) 
    90       that make 12 months of SECHIBA equal to one YEAR. 
    91  
    92   - And the new version is the parallelization of orchidee_1_8_2 with tags : 
    93     * tag OOL_1_9_3 for the ORCHIDEE_OL driver and scripts. 
    94     * the new orchidee_1_9_4 tag. 
    95  
    96 Important note : on the both so-called MERGE version orchidee_1_8_2_MERGE and orchidee_1_9_4, the 
    97 DGVM model will not work correctly (for theoretical reason) and shouldn't be used. 
    98  
    99 I have modify mod.def in modipsl to be compatible for all those new versions. 
    100 Please see the notes of the training course on modipsl and 
    101 the coupled model on the link : 
    102  
    103 Coupled model : IPSLCM4_v2 for new users' là : http://forge.ipsl.jussieu.fr/igcmg/wiki 
    104  
    105 Document CSPOLE 15/05/08 : Fiche décrivant le modèle et le travail sur ORCHIDEE en 2008. http://dods.ipsl.jussieu.fr/orchidee/Fiche_ORCHIDEE_CSPOLE_190508.pdf [[BR]] 
    106 Un point : http://dods.ipsl.jussieu.fr/orchidee/point_version_1.3-1.6-1.9.pdf 
    107  
    108 = In attachement = 
    109  * CVS : CVS management tree. See page ModelVersions for more informations on each ORCHIDEE Tags. 
    110  * orchidee.def (must be renamed as run.def for the run) : all external parameters (english and french) 
    111  * callgraphs : Graph tree of the code (from valgrind/callgrind and kcachegrind/graphviz packages) 
    112  
    113 See also LastChanges page.[[BR]] 
    114  
    115  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/callgraph_SECHIBA.eps callgraph_SECHIBA.eps] 
    116  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/callgraph_SECHIBA_simplifie.eps callgraph_SECHIBA_simplifie.eps] 
    117  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/callgraph_SECHIBA_STOMATE.eps callgraph_SECHIBA_STOMATE.eps]  
    118  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/orchidee_francais.def orchidee_francais.def] "Fichier de paramètres pour toutes les versions d'ORCHIDEE." 
    119  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/orchidee_english.def orchidee_english.def] "Parameters file for all ORCHIDEE TAGs" 
    120  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/CVS_orchidee.eps CVS_orchidee.eps] "TAG orchidee_1_9_5" 
    121  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/CVS_orchidee.gif CVS_orchidee.gif] "TAG orchidee_1_9_5" 
    122  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/CVS_orchidee.fig CVS_orchidee.fig] "TAG orchidee_1_9_5" 
    123  * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/arbre_SVN.png arbre_SVN.png] "SVN tree for developpement."