[9846] | 1 | #!/bin/bash |
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| 2 | # |
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| 3 | # BENCH launching scripts for beaufix, Meteo-France |
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| 4 | # To be modified for other machines |
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| 5 | # |
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| 6 | set -u |
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| 7 | set -vx |
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| 8 | # |
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| 9 | cores=$1 |
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| 10 | ncore_node=$2 |
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| 11 | resolution=$3 |
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| 12 | machine=$( hostname | sed -e "s/[0-9]*//g" ) |
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| 13 | ###################################################################### |
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| 14 | # |
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| 15 | # number of processes for each executable |
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| 16 | nproc_exe1=$( echo $cores | bc ) |
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| 17 | (( nproc = $nproc_exe1 )) |
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| 18 | (( nnode = $nproc / $ncore_node )) |
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| 19 | [ $nnode -lt 1 ] && nnode=1 |
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| 20 | |
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| 21 | nproc5=$( printf "%05d\n" ${nproc_exe1} ) |
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| 22 | |
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| 23 | if [ "$machine" == "beaufix" ] |
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| 24 | then |
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| 25 | |
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| 26 | cat > Log/run_bench << EOF |
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| 27 | #!/bin/bash |
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| 28 | #SBATCH --time=00:1:00 |
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| 29 | #SBATCH -p normal64 # partition/queue |
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| 30 | #SBATCH --job-name=bench # job name |
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| 31 | #SBATCH -N $nnode # number of nodes |
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| 32 | #SBATCH -n $nproc # number of procs |
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| 33 | #SBATCH -o /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/Log/job.out%j |
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| 34 | #SBATCH -e /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/Log/job.out%j |
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| 35 | #SBATCH --exclusive |
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| 36 | |
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| 37 | module unload intelmpi intel grib_api |
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| 38 | module load intel/16.1.150 intelmpi/5.1.2.150 |
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| 39 | |
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| 40 | itac=0 |
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| 41 | xpmpi=0 |
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| 42 | |
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| 43 | if [ \$xpmpi == 1 ]; then |
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| 44 | module load bullxde |
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| 45 | module load xPMPI/1.1_intelmpi |
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| 46 | fi |
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| 47 | |
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| 48 | [ \$itac == 1 ] && module load itac/2017.2.028 |
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| 49 | |
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| 50 | set -vx |
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| 51 | |
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| 52 | cd \${TMPDIR} |
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| 53 | cp /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/* . |
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| 54 | |
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| 55 | # Best decompositions BENCH-1 |
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| 56 | jpni=${cores/\**/} |
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| 57 | jpni=${cores/?*\*/} |
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| 58 | |
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| 59 | sed -e "s/jpni *=.*/jpni = \${jpni}/" -e "s/jpnj *=.*/jpnj = \${jpnj}/" namelist_cfg_orca${resolution}_like > namelist_cfg |
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| 60 | |
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| 61 | export OMP_NUM_THREADS=1 |
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| 62 | ulimit -s unlimited |
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| 63 | # |
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| 64 | if [ \$itac == 1 ]; then |
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| 65 | source /opt/softs/intel/2017/update_1/itac_latest/bin/itacvars.sh |
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| 66 | time mpirun -ordered-output -prepend-rank -trace -np $nproc_exe1 ./nemo > jobout 2>joberr |
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| 67 | else |
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| 68 | time mpirun -ordered-output -prepend-rank -np $nproc_exe1 ./nemo > jobout_${resolution}_${nproc5} |
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| 69 | fi |
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| 70 | /opt/softs/bin/ja |
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| 71 | |
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| 72 | if [ \$xpmpi == 1 ]; then |
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| 73 | module unload xPMPI/1.1_intelmpi |
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| 74 | module unload bullxde |
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| 75 | fi |
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| 76 | # |
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| 77 | EOF |
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| 78 | |
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| 79 | |
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| 80 | ###################################################################### |
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| 81 | ### |
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| 82 | ### 4. Execute the model |
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| 83 | |
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| 84 | echo 'Submitting the job to queue using sbatch' |
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| 85 | sbatch Log/run_bench |
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| 86 | squeue -u cglo315 |
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| 87 | |
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| 88 | echo 'is executed or submitted to queue.' |
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| 89 | |
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| 90 | ###################################################################### |
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| 91 | |
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| 92 | fi |
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| 93 | |
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| 94 | if [ "$machine" == "curie" ] |
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| 95 | then |
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| 96 | |
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| 97 | if [ $nproc_exe1 -lt 256 ] |
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| 98 | then |
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| 99 | timejob=10000 |
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| 100 | else |
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| 101 | timejob=1800 |
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| 102 | fi |
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| 103 | |
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| 104 | jobname=$HOME/binrun/jobbench |
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| 105 | cat > $jobname << EOF |
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| 106 | #!/bin/bash |
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| 107 | #MSUB -r jobbench${nproc5} |
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| 108 | #MSUB -n ${nproc_exe1} |
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| 109 | #MSUB -T $timejob |
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| 110 | #MSUB -e bench_${resolution}_${nproc5}_%I.eo |
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| 111 | #MSUB -o bench_${resolution}_${nproc5}_%I.eo |
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| 112 | #MSUB -j oe |
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| 113 | #MSUB -x |
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| 114 | #MSUB -q standard |
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| 115 | #MSUB -A gen6895 |
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| 116 | #========================================== |
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| 117 | set -u |
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| 118 | # |
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| 119 | |
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| 120 | cd \${BRIDGE_MSUB_PWD}/.. |
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| 121 | |
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| 122 | rsync -av --exclude="*eo" EXPREF/ EXP_${resolution}_${nproc5}/ |
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| 123 | rsync -av EXP00/nemo EXP_${resolution}_${nproc5}/nemo |
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| 124 | cd EXP_${resolution}_${nproc5}/ |
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| 125 | |
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| 126 | jpni=${cores/\**/} |
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| 127 | jpnj=${cores/?*\*/} |
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| 128 | |
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| 129 | sed -e "s/jpni *=.*/jpni = \${jpni}/" -e "s/jpnj *=.*/jpnj = \${jpnj}/" namelist_cfg_orca${resolution}_like > namelist_cfg |
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| 130 | |
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| 131 | time ccc_mprun -n \${BRIDGE_MSUB_NPROC} ./nemo > jobout_${resolution}_${nproc5} |
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| 132 | |
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| 133 | EOF |
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| 134 | |
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| 135 | ccc_msub $jobname |
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| 136 | |
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| 137 | fi |
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