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@Article{         adcroft.campin_04,
  author        = {A. Adcroft and J.-M. Campin},
  title         = {Rescaled height coordinates for accurate representation of
                  free-surface flows in ocean circulation models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {jan},
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  url           = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003},
  pages         = {269--284},
  volume        = {7},
  number        = {3-4},
  issn          = {1463-5003}
}

@Article{         arakawa.hsu_90,
  author        = {A. Arakawa and Y.-J. G. Hsu},
  title         = {Energy Conserving and Potential-Enstrophy Dissipating
                  Schemes for the Shallow Water Equations},
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  publisher     = {American Meteorological Society},
  year          = {1990},
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  pages         = {1960--1969},
  volume        = {118},
  number        = {10},
  issn          = {1520-0493}
}

@Article{         arakawa.lamb_81,
  author        = {A. Arakawa and V. R. Lamb},
  title         = {A Potential Enstrophy and Energy Conserving Scheme for the
                  Shallow Water Equations},
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  publisher     = {American Meteorological Society},
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  volume        = {109},
  number        = {1},
  issn          = {1520-0493}
}

@Article{         arakawa_66,
  author        = {A. Arakawa},
  title         = {Computational design for long-term numerical integration
                  of the equations of fluid motion: Two-dimensional
                  incompressible flow. Part {I}},
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  number        = {1},
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@Article{         arbic.garner.ea_04,
  author        = {B. K. Arbic and S. T. Garner and R. W. Hallberg and H. L.
                  Simmons},
  title         = {The accuracy of surface elevations in forward global
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  publisher     = {Elsevier BV},
  year          = {2004},
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@Article{         artale.iudicone.ea_02,
  author        = {V. Artale and D. Iudicone and R. Santoleri and V. Rupolo
                  and S. Marullo and F. {D'O}rtenzio},
  title         = {Role of surface fluxes in Ocean General Circulation Models
                  using satellite sea surface temperature: Validation of and
                  sensitivity to the forcing frequency of the Mediterranean
                  thermohaline circulation},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2002},
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  url           = {http://dx.doi.org/10.1029/2000JC000452},
  pages         = {2901--2924},
  volume        = {107},
  number        = {C8},
  issn          = {0148-0227}
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@Article{         axell_02,
  author        = {L. B. Axell},
  title         = {Wind-driven internal waves and Langmuir circulations in a
                  numerical ocean model of the southern Baltic Sea},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2002},
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  url           = {http://dx.doi.org/10.1029/2001JC000922},
  volume        = {107},
  number        = {C11},
  issn          = {0148-0227}
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@Article{         barnier.madec.ea_06,
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                  and E. Durand and S. Gulev and E. Remy and C. Talandier and
                  S. Theetten and M. Maltrud and J. McClean and B. De Cuevas},
  title         = {Impact of partial steps and momentum advection schemes in
                  a global ocean circulation model at eddy-permitting
                  resolution},
  journal       = {Ocean Dynamics},
  publisher     = {Springer Nature},
  year          = {2006},
  month         = {jun},
  doi           = {10.1007/s10236-006-0082-1},
  url           = {http://dx.doi.org/10.1007/s10236-006-0082-1},
  pages         = {543--567},
  volume        = {56},
  number        = {5-6},
  issn          = {1616-7228}
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@Article{         beckmann.doscher_97,
  author        = {A. Beckmann and R. D\"{o}scher},
  title         = {A method for improved representation of dense water
                  spreading over topography in geopotential-coordinate
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  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {apr},
  doi           = {10.1175/1520-0485(1997)027<0581:amfiro>2.0.co;2},
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  pages         = {581--591},
  volume        = {27},
  number        = {4},
  issn          = {1520-0485}
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@Article{         beckmann.goosse_03,
  author        = {A. Beckmann and H. Goosse},
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  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2003},
  month         = {jan},
  doi           = {10.1016/s1463-5003(02)00019-7},
  url           = {http://dx.doi.org/10.1016/s1463-5003(02)00019-7},
  pages         = {157--170},
  volume        = {5},
  number        = {2},
  issn          = {1463-5003}
}

@Article{         beckmann.haidvogel_93,
  author        = {A. Beckmann and D. B. Haidvogel},
  title         = {Numerical Simulation of Flow around a Tall Isolated
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  publisher     = {American Meteorological Society},
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  pages         = {1736--1753},
  volume        = {23},
  number        = {8},
  issn          = {1520-0485}
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@Article{         bernie.guilyardi.ea_07,
  author        = {D. J. Bernie and E. Guilyardi and G. Madec and J. M.
                  Slingo and S. J. Woolnough},
  title         = {Impact of resolving the diurnal cycle in an
                  ocean-atmosphere {GCM}. Part 1: a diurnally forced
                  {OGCM}},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {2007},
  month         = {may},
  doi           = {10.1007/s00382-007-0249-6},
  url           = {http://dx.doi.org/10.1007/s00382-007-0249-6},
  pages         = {575--590},
  volume        = {29},
  number        = {6},
  issn          = {1432-0894}
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@Article{         bernie.woolnough.ea_05,
  author        = {D. J. Bernie and S. J. Woolnough and J. M. Slingo and E.
                  Guilyardi},
  title         = {Modeling diurnal and intraseasonal variability of the
                  ocean mixed layer},
  journal       = {Journal of Climate},
  publisher     = {American Meteorological Society},
  year          = {2005},
  month         = {apr},
  doi           = {10.1175/jcli3319.1},
  url           = {http://dx.doi.org/10.1175/jcli3319.1},
  pages         = {1190--1202},
  volume        = {18},
  number        = {8},
  issn          = {1520-0442}
}

@Article{         blanke.delecluse_93,
  author        = {B. Blanke and P. Del\'{e}cluse},
  title         = {Variability of the tropical Atlantic Ocean simulated by a
                  General Circulation Model with two different mixed-layer
                  physics},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1993},
  month         = {jul},
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  pages         = {1363--1388},
  volume        = {23},
  number        = {7},
  issn          = {1520-0485}
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@Article{         blanke.raynaud_97,
  author        = {B. Blanke and S. Raynaud},
  title         = {Kinematics of the Pacific Equatorial Undercurrent: An
                  Eulerian and Lagrangian Approach from {GCM} Results},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1997},
  month         = {jun},
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  pages         = {1038--1053},
  volume        = {27},
  number        = {6},
  issn          = {1520-0485}
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@Article{         bloom.takacs.ea_96,
  author        = {S. C. Bloom and L. L. Takacs and A. M. Da Silva and D.
                  Ledvina},
  title         = {Data assimilation using incremental analysis updates},
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  year          = {1996},
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  pages         = {1256--1271},
  volume        = {124},
  number        = {6},
  issn          = {1520-0493}
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@Article{         bougeault.lacarrere_89,
  author        = {P. Bougeault and P. Lacarrere},
  title         = {Parameterization of Orography-Induced Turbulence in a
                  Mesobeta--Scale Model},
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  year          = {1989},
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  pages         = {1872--1890},
  volume        = {117},
  number        = {8},
  issn          = {1520-0493}
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@Article{         bouillon.maqueda.ea_09,
  author        = {S. Bouillon and M. A. Morales Maqueda and V. Legat and T.
                  Fichefet},
  title         = {An elastic-viscous-plastic sea ice model formulated on
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  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2009},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.01.004},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004},
  pages         = {174--184},
  volume        = {27},
  number        = {3-4},
  issn          = {1463-5003}
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@Article{         boyer-montegut.madec.ea_04,
  author        = {C. de Boyer Mont\'{e}gut and G. Madec and A. S. Fischer
                  and A. Lazar and D. Iudicone},
  title         = {Mixed layer depth over the global ocean: An examination of
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  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2004},
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  url           = {http://dx.doi.org/10.1029/2004JC002378},
  pages         = {C12003},
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  number        = {C12},
  issn          = {0148-0227}
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@Article{         brankart.candille.ea_15,
  author        = {J.-M. Brankart and G. Candille and F. Garnier and C.
                  Calone and A. Melet and P.-A. Bouttier and P. Brasseur and
                  J. Verron},
  title         = {A generic approach to explicit simulation of uncertainty
                  in the {NEMO} ocean model},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2015},
  month         = {may},
  doi           = {10.5194/gmd-8-1285-2015},
  url           = {http://dx.doi.org/10.5194/gmd-8-1285-2015},
  pages         = {1285--1297},
  volume        = {8},
  number        = {5},
  issn          = {1991-9603}
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@Article{         brankart_13,
  author        = {J.-M. Brankart},
  title         = {Impact of uncertainties in the horizontal density gradient
                  upon low resolution global ocean modelling},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2013},
  month         = {jun},
  doi           = {10.1016/j.ocemod.2013.02.004},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2013.02.004},
  pages         = {64--76},
  volume        = {66},
  issn          = {1463-5003}
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@Article{         breivik.bidlot.ea_16,
  author        = {{\O}. Breivik and J.-R. Bidlot and P. A. E. M. Janssen},
  title         = {A Stokes drift approximation based on the Phillips
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  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2016},
  month         = {apr},
  doi           = {10.1016/j.ocemod.2016.01.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2016.01.005},
  pages         = {49--56},
  volume        = {100},
  issn          = {1463-5003}
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@Article{         breivik.janssen.ea_14,
  author        = {{\O}. Breivik and P. A. E. M. Janssen and J.-R. Bidlot},
  title         = {Approximate Stokes Drift Profiles in Deep Water},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2014},
  month         = {sep},
  doi           = {10.1175/jpo-d-14-0020.1},
  url           = {http://dx.doi.org/10.1175/JPO-D-14-0020.1},
  pages         = {2433--2445},
  volume        = {44},
  number        = {9},
  issn          = {1520-0485}
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@Article{         brodeau.barnier.ea_10,
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                  Penduff and S. Gulev},
  title         = {An {ERA40}-based atmospheric forcing for global ocean
                  circulation models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2009.10.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2009.10.005},
  pages         = {88--104},
  volume        = {31},
  number        = {3-4},
  issn          = {1463-5003}
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@Article{         brown.campana_78,
  author        = {J. A. Brown and K. A. Campana},
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@Article{         bryan_97,
  author        = {K. Bryan},
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  publisher     = {Elsevier BV},
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@Article{         burchard_02,
  author        = {H. Burchard},
  title         = {Energy-conserving discretisation of turbulent shear and
                  buoyancy production},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2002},
  month         = {jun},
  doi           = {10.1016/s1463-5003(02)00009-4},
  url           = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4},
  pages         = {347--361},
  volume        = {4},
  number        = {3-4},
  issn          = {1463-5003}
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@Article{         campin.adcroft.ea_04,
  author        = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
  title         = {Conservation of properties in a free-surface model},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2004},
  month         = {jan},
  doi           = {10.1016/s1463-5003(03)00009-x},
  url           = {http://dx.doi.org/10.1016/s1463-5003(03)00009-x},
  pages         = {221--244},
  volume        = {6},
  number        = {3-4},
  issn          = {1463-5003}
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@Article{         campin.goosse_99,
  author        = {J.-M. Campin and H. Goosse},
  title         = {Parameterization of density-driven downsloping flow for a
                  coarse-resolution ocean model in z-coordinate},
  journal       = {Tellus A},
  publisher     = {Informa UK Limited},
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  month         = {may},
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  url           = {http://dx.doi.org/10.1034/j.1600-0870.1999.t01-3-00006.x},
  pages         = {412--430},
  volume        = {51},
  number        = {3},
  issn          = {1600-0870}
}

@Article{         campin.marshall.ea_08,
  author        = {J.-M. Campin and J. Marshall and D. Ferreira},
  title         = {Sea ice-ocean coupling using a rescaled vertical
                  coordinate z^{∗}},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2008},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2008.05.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005},
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  volume        = {24},
  number        = {1-2},
  issn          = {1463-5003}
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@Article{         canuto.howard.ea_01,
  author        = {V. M. Canuto and A. Howard and Y. Cheng and M. S.
                  Dubovikov},
  title         = {Ocean turbulence. Part {I}: One-point closure
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  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2001},
  month         = {jun},
  doi           = {10.1175/1520-0485(2001)031<1413:otpiop>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(2001)031<1413:otpiop>2.0.co;2},
  pages         = {1413--1426},
  volume        = {31},
  number        = {6},
  issn          = {1520-0485}
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@Article{         carrere.lyard_03,
  author        = {L. Carr\`{e}re and F. Lyard},
  title         = {Modeling the barotropic response of the global ocean to
                  atmospheric wind and pressure forcing - comparisons with
                  observations},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2003},
  month         = {mar},
  doi           = {10.1029/2002gl016473},
  url           = {http://dx.doi.org/10.1029/2002GL016473},
  volume        = {30},
  number        = {6},
  issn          = {0094-8276}
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@TechReport{      chanut_mersea05,
  author        = {J. Chanut},
  title         = {Nesting code for {NEMO}},
  year          = {2005},
  month         = {may},
  doi           = {10.5281/zenodo.3243409},
  url           = {https://doi.org/10.5281/zenodo.3243409},
  institution   = {European Union: Marine Environment and Security for the
                  European Area (MERSEA) Integrated Project},
  pages         = {25}
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@Article{         chassignet.smith.ea_03,
  author        = {E. P. Chassignet and L. T. Smith and G. R. Halliwell and
                  R. Bleck},
  title         = {North Atlantic Simulations with the Hybrid Coordinate
                  Ocean Model ({HYCOM}): Impact of the Vertical Coordinate
                  Choice, Reference Pressure, and Thermobaricity},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2003},
  month         = {dec},
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  url           = {http://dx.doi.org/10.1175/1520-0485(2003)033<2504:naswth>2.0.co;2},
  pages         = {2504--2526},
  volume        = {33},
  number        = {12},
  issn          = {1520-0485}
}

@Article{         cox_87,
  author        = {M. D. Cox},
  title         = {Isopycnal diffusion in a z-coordinate ocean model},
  journal       = {Ocean Modelling},
  year          = {1987},
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  url           = {https://www.researchgate.net/publication/243768762_Isopycnal_diffusion_in_a_z-coordinate_ocean_model},
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  volume        = {74}
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@Article{         craig.banner_94,
  author        = {P. D. Craig and M. L. Banner},
  title         = {Modeling wave-enhanced turbulence in the ocean surface
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  publisher     = {American Meteorological Society},
  year          = {1994},
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  issn          = {1520-0485}
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@Article{         craik.leibovich_76,
  author        = {A. D. D. Craik and S. Leibovich},
  title         = {A rational model for Langmuir circulations},
  journal       = {Journal of Fluid Mechanics},
  publisher     = {Cambridge University Press (CUP)},
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@Article{         dalessio.abdella.ea_98,
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  number        = {8},
  issn          = {1520-0485}
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@Book{            daley.barker_01,
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@Article{         danabasoglu.ferrari.ea_08,
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@Article{         davies_76,
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@Article{         debreu.vouland.ea_08,
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  pages         = {8--13},
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  number        = {1},
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@InCollection{    delecluse.madec_99,
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  title         = {Ocean modelling and the role of the ocean in the climate
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  booktitle     = {Modeling the Earth's Climate and its Variability},
  publisher     = {North Holland},
  editor        = {W. R. Holland and S. Joussaume and F. David},
  year          = {1999},
  isbn          = {978-0-444-50338-1},
  series        = {Les Houches},
  volume        = {67},
  pages         = {237--313}
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@PhDThesis{       demange_14,
  author        = {J. Demange},
  title         = {Advection and gravity waves propagation numerical schemes
                  for oceanic circulation models},
  year          = {2014},
  pages         = {138},
  url           = {https://tel.archives-ouvertes.fr/tel-01104703/file/DEMANGE_2014_archivage.pdf},
  school        = {Grenoble University, France}
}

@Article{         dobricic.pinardi.ea_07,
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  year          = {2007},
  month         = {mar},
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  url           = {http://dx.doi.org/10.5194/os-3-149-2007},
  pages         = {149--157},
  volume        = {3},
  number        = {1},
  issn          = {1812-0792}
}

@Article{         drijfhout_94,
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  pages         = {353--369},
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@Article{         dukowicz.smith_94,
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@Article{         egbert.ray_00,
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@Article{         eiseman.stone_80,
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@Article{         emile-geay.madec_09,
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@Article{         engedahl_95,
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  volume        = {47},
  number        = {3},
  issn          = {1600-0870}
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@PhDThesis{       farge-coulombier_87,
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  url           = {http://www.theses.fr/1987PA066365},
  school        = {Paris VI University, France}
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@Article{         farrow.stevens_95,
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  issn          = {1520-0485}
}

@Article{         flather_94,
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  pages         = {172--190},
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@Book{            fofonoff.millard_83,
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@Article{         gargett_84,
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}

@Article{         gaspar.gregoris.ea_90,
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  issn          = {0148-0227}
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@Article{         gent.mcwilliams_90,
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@Article{         gentemann.minnett.ea_09,
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@Article{         gerdes.koberle_91,
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@Article{         gerdes_93,
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@TechReport{      gibson_86,
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  number        = {120}
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@Book{            gill_82,
  author        = {A. E. Gill},
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  issn          = {0074-6142},
  year          = {1982},
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  isbn          = {978-0-12-283522-3},
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@Article{         goosse.deleersnijder.ea_99,
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@Article{         graham.mcdougall_13,
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  pages         = {838--862},
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  issn          = {1520-0485}
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@Article{         greatbatch_94,
  author        = {R. J. Greatbatch},
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@Article{         griffies.biastoch.ea_09,
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  month         = {jan},
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  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.08.007},
  pages         = {1--46},
  volume        = {26},
  number        = {1-2},
  issn          = {1463-5003}
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@Article{         griffies.gnanadesikan.ea_98,
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  issn          = {1520-0485}
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@Article{         griffies.pacanowski.ea_01,
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  issn          = {1520-0493}
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@Book{            griffies_04,
  author        = {S. M. Griffies},
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  pages         = {434},
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@Article{         griffies_98,
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  pages         = {831--841},
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  issn          = {1520-0485}
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@Article{         guilyardi.madec.ea_01,
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@Article{         haney_91,
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  year          = {1991},
  month         = {apr},
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  url           = {http://dx.doi.org/10.1175/1520-0485(1991)021<0610:otpgfo>2.0.co;2},
  pages         = {610--619},
  volume        = {21},
  number        = {4},
  issn          = {1520-0485}
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  publisher     = {Elsevier BV},
  year          = {2001},
  month         = {may},
  doi           = {10.1016/s0924-7963(01)00025-2},
  url           = {http://dx.doi.org/10.1016/s0924-7963(01)00025-2},
  pages         = {385--422},
  volume        = {29},
  number        = {1-4},
  issn          = {0924-7963}
}

@TechReport{      levier.treguier.ea_mersea07,
  author        = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V.
                  Garnier},
  title         = {Free surface and variable volume in the {NEMO} code},
  year          = {2007},
  month         = {may},
  doi           = {10.5281/zenodo.3244182},
  url           = {https://doi.org/10.5281/zenodo.3244182},
  institution   = {European Union: Marine Environment and Security for the
                  European Area (MERSEA) Integrated Project},
  pages         = {47}
}

@Article{         levy.estublier.ea_01,
  author        = {M. L\'{e}vy and A. Estublier and G Madec},
  title         = {Choice of an advection scheme for biogeochemical models},
  journal       = {Geophysical Research Letters},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2001},
  month         = {oct},
  doi           = {10.1029/2001gl012947},
  url           = {http://dx.doi.org/10.1029/2001gl012947},
  pages         = {3725--3728},
  volume        = {28},
  number        = {19},
  issn          = {0094-8276}
}

@Article{         levy.klein.ea_10,
  author        = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D.
                  Iovino and G. Madec and S. Masson and K. Takahashi},
  title         = {Modifications of gyre circulation by sub-mesoscale
                  physics},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2010.04.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2010.04.001},
  pages         = {1--15},
  volume        = {34},
  number        = {1-2},
  issn          = {1463-5003}
}

@Article{         li.garrett_93,
  author        = {M. Li and C. Garrett},
  title         = {Cell merging and the jet/downwelling ratio in Langmuir
                  circulation},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1993},
  month         = {nov},
  doi           = {10.1357/0022240933223945},
  url           = {http://dx.doi.org/10.1357/0022240933223945},
  pages         = {737--769},
  volume        = {51},
  number        = {4},
  issn          = {1543-9542}
}

@Article{         losch_08,
  author        = {M. Losch},
  title         = {Modeling ice shelf cavities in a z coordinate Ocean
                  General Circulation Model},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {2008},
  month         = {aug},
  doi           = {10.1029/2007jc004368},
  url           = {http://dx.doi.org/10.1029/2007jc004368},
  volume        = {113},
  number        = {C8},
  issn          = {0148-0227}
}

@Article{         lott.madec.ea_90,
  author        = {F. Lott and G. Madec and J. Verron},
  title         = {Topographic experiments in an Ocean General Circulation
                  Model},
  journal       = {Ocean Modelling},
  year          = {1990},
  pages         = {1--4},
  volume        = {88}
}

@Article{         madec.chartier.ea_91,
  author        = {G. Madec and M. Chartier and M. Cr\'{e}pon},
  title         = {The effect of thermohaline forcing variability on deep
                  water formation in the western Mediterranean Sea: a
                  high-resolution three-dimensional numerical study},
  journal       = {Dynamics of Atmospheres and Oceans},
  publisher     = {Elsevier BV},
  year          = {1991},
  month         = {apr},
  doi           = {10.1016/0377-0265(91)90024-a},
  url           = {http://dx.doi.org/10.1016/0377-0265(91)90024-a},
  pages         = {301--332},
  volume        = {15},
  number        = {3-5},
  issn          = {0377-0265}
}

@InProceedings{   madec.crepon_91,
  author        = {G. Madec and M. Cr\'{e}pon},
  booktitle     = "Deep convection and deep water formation in the oceans,
                  Proceedings of the international Monterey colloquium on
                  deep convection and deep water formation in the oceans",
  publisher     = {Elsevier},
  editor        = {P.C. Chu and J.C. Gascard},
  year          = {1991},
  doi           = {10.1016/s0422-9894(08)70071-0},
  url           = {http://dx.doi.org/10.1016/s0422-9894(08)70071-0},
  title         = {Thermohaline-driven deep water formation in the
                  northwestern Mediterranean Sea},
  chapter       = {15},
  series        = {Elsevier Oceanography},
  volume        = {57},
  pages         = {241--265},
  issn          = {0422-9894},
  isbn          = {978-0-444-88764-1}
}

@Article{         madec.delecluse.ea_91,
  author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and M.
                  Chartier},
  title         = {A three-dimensional numerical study of deep-water
                  formation in the northwestern Mediterranean Sea},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1991},
  month         = {sep},
  doi           = {10.1175/1520-0485(1991)021<1349:atdnso>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1991)021<1349:atdnso>2.0.co;2},
  pages         = {1349--1371},
  volume        = {21},
  number        = {9},
  issn          = {1520-0485}
}

@Article{         madec.delecluse.ea_96,
  author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and F.
                  Lott},
  title         = {Large-Scale Preconditioning of Deep-Water Formation in the
                  northwestern Mediterranean Sea},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1996},
  month         = {aug},
  doi           = {10.1175/1520-0485(1996)026<1393:lspodw>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1996)026<1393:lspodw>2.0.co;2},
  pages         = {1393--1408},
  volume        = {26},
  number        = {8},
  issn          = {1520-0485}
}

@Manual{          madec.delecluse.ea_98,
  author        = {G. Madec and P. Del\'{e}cluse and M. Imbard and C.
                  L\'{e}vy},
  title         = {{OPA} 8.1 Ocean General Circulation Model reference
                  manual},
  journal       = {Note du Pole de Mod\'{e}lisation},
  publisher     = {Institut Pierre Simon Laplace ({IPSL})},
  year          = {1998},
  url           = {http://cmc.ipsl.fr/images/publications/scientific_notes/note11.pdf},
  pages         = {91},
  issn          = {1288-1619},
  volume        = {11}
}

@Article{         madec.delecluse_97,
  author        = {G. Madec and P. Del\'{e}cluse},
  title         = {The {OPA}/{ARPEGE} and {OPA}/{LMD} Global Ocean-Atmosphere
                  Coupled Model},
  journal       = {International WOCE Newsletter},
  publisher     = {University of Southampton},
  year          = {1997},
  month         = {apr},
  url           = {https://www.nodc.noaa.gov/woce/wdiu/wocedocs/newsltr/news26/news26.pdf},
  pages         = {12--15},
  volume        = {26}
}

@Article{         madec.imbard_96,
  author        = {G. Madec and M. Imbard},
  title         = {A global ocean mesh to overcome the North Pole
                  singularity},
  journal       = {Climate Dynamics},
  publisher     = {Springer Nature},
  year          = {1996},
  month         = {may},
  doi           = {10.1007/bf00211684},
  url           = {http://dx.doi.org/10.1007/bf00211684},
  pages         = {381--388},
  volume        = {12},
  number        = {6},
  issn          = {1432-0894}
}

@Article{         maltrud.smith.ea_98,
  author        = {M. E. Maltrud and R. D. Smith and A. J. Semtner and R. C.
                  Malone},
  title         = {Global eddy-resolving ocean simulations driven by
                  1985-1995 atmospheric winds},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1998},
  month         = {dec},
  doi           = {10.1029/1998jc900013},
  url           = {http://dx.doi.org/10.1029/1998jc900013},
  pages         = {30825--30853},
  volume        = {103},
  number        = {C13},
  issn          = {0148-0227}
}

@Article{         marchesiello.williams.ea_01,
  author        = {P. Marchesiello and J. C. McWilliams and A. Shchepetkin},
  title         = {Open boundary conditions for long-term integration of
                  regional oceanic models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2001},
  month         = {jan},
  doi           = {10.1016/s1463-5003(00)00013-5},
  url           = {http://dx.doi.org/10.1016/s1463-5003(00)00013-5},
  pages         = {1--20},
  volume        = {3},
  number        = {1-2},
  issn          = {1463-5003}
}

@Article{         marsaleix.auclair.ea_08,
  author        = {P. Marsaleix and F. Auclair and J. W. Floor and M. J.
                  Herrmann and C. Estournel and I. Pairaud and C. Ulses},
  title         = {Energy conservation issues in sigma-coordinate
                  free-surface ocean models},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2008},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2007.07.005},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2007.07.005},
  pages         = {61--89},
  volume        = {20},
  number        = {1},
  issn          = {1463-5003}
}

@Article{         marsh.ivchenko.ea_15,
  author        = {R. Marsh and V. O. Ivchenko and N. Skliris and S. Alderson
                  and G. R. Bigg and G. Madec and A. T. Blaker and Y. Aksenov
                  and B. Sinha and A. C. Coward and J. Le Sommer and N.
                  Merino and V. B. Zalesny},
  title         = {{NEMO}-{ICB} (v1.0): interactive icebergs in the {NEMO}
                  ocean model globally configured at eddy-permitting
                  resolution},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2015},
  month         = {may},
  doi           = {10.5194/gmd-8-1547-2015},
  url           = {http://dx.doi.org/10.5194/gmd-8-1547-2015},
  pages         = {1547--1562},
  volume        = {8},
  number        = {5},
  issn          = {1991-9603}
}

@Article{         marti.madec.ea_92,
  author        = {O. Marti and G. Madec and P. Del\'{e}cluse},
  title         = {Comment on {\"}Net diffusivity in ocean general circulation
                  models with nonuniform grids{\"} by {F}. {L}. Yin and {I}.
                  {Y}. Fung},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1992},
  doi           = {10.1029/92jc00306},
  url           = {http://dx.doi.org/10.1029/92jc00306},
  pages         = {12763--12766},
  volume        = {97},
  number        = {C8},
  issn          = {0148-0227}
}

@Article{         martin.adcroft_10,
  author        = {T. Martin and A. Adcroft},
  title         = {Parameterizing the fresh-water flux from land ice to ocean
                  with interactive icebergs in a coupled climate model},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2010},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2010.05.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2010.05.001},
  pages         = {111--124},
  volume        = {34},
  number        = {3-4},
  issn          = {1463-5003}
}

@Article{         mathiot.jenkins.ea_17,
  author        = {P. Mathiot and A. Jenkins and C. Harris and G. Madec},
  title         = {Explicit representation and parametrised impacts of under
                  ice shelf seas in the z^\star coordinate ocean model {NEMO}
                  3.6},
  journal       = {Geoscientific Model Development},
  publisher     = {Copernicus GmbH},
  year          = {2017},
  month         = {jul},
  doi           = {10.5194/gmd-10-2849-2017},
  url           = {http://dx.doi.org/10.5194/gmd-10-2849-2017},
  pages         = {2849--2874},
  volume        = {10},
  number        = {7},
  issn          = {1991-9603}
}

@Article{         mcdougall.taylor_84,
  author        = {T. J. McDougall and J. R. Taylor},
  title         = {Flux measurements across a finger interface at low values
                  of the stability ratio},
  journal       = {Journal of Marine Research},
  publisher     = {Journal of Marine Research/Yale},
  year          = {1984},
  month         = {feb},
  doi           = {10.1357/002224084788506095},
  url           = {http://dx.doi.org/10.1357/002224084788506095},
  pages         = {1--14},
  volume        = {42},
  number        = {1},
  issn          = {1543-9542}
}

@Article{         mcdougall_87,
  author        = {T. J. McDougall},
  title         = {Neutral Surfaces},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1987},
  month         = {nov},
  doi           = {10.1175/1520-0485(1987)017<1950:ns>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1987)017<1950:NS>2.0.CO;2},
  pages         = {1950--1964},
  volume        = {17},
  number        = {11},
  issn          = {1520-0485}
}

@Article{         mellor.blumberg_04,
  author        = {G. Mellor and A. Blumberg},
  title         = {Wave Breaking and Ocean Surface Layer Thermal Response},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {2004},
  month         = {mar},
  doi           = {10.1175/2517.1},
  url           = {http://dx.doi.org/10.1175/2517.1},
  pages         = {693--698},
  volume        = {34},
  number        = {3},
  issn          = {1520-0485}
}

@Article{         mellor.yamada_82,
  author        = {G. L. Mellor and T. Yamada},
  title         = {Development of a turbulence closure model for geophysical
                  fluid problems},
  journal       = {Reviews of Geophysics},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1982},
  doi           = {10.1029/rg020i004p00851},
  url           = {http://dx.doi.org/10.1029/rg020i004p00851},
  pages         = {851--875},
  volume        = {20},
  number        = {4},
  issn          = {8755-1209}
}

@Article{         merryfield.holloway.ea_99,
  author        = {W. J. Merryfield and G. Holloway and A. E. Gargett},
  title         = {A Global Ocean Model with Double-Diffusive Mixing},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1999},
  month         = {jun},
  doi           = {10.1175/1520-0485(1999)029<1124:agomwd>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1999)029<1124:agomwd>2.0.co;2},
  pages         = {1124--1142},
  volume        = {29},
  number        = {6},
  issn          = {1520-0485}
}

@Book{            mesinger.arakawa_76,
  author        = {F. Mesinger and A. Arakawa},
  booktitle     = {Numerical methods used in atmospheric models},
  year          = {1976},
  month         = {aug},
  url           = {https://www.researchgate.net/publication/234333726_Numerical_Methods_Used_In_Atmospheric_Models},
  series        = {GARP Publication},
  volume        = {1},
  number        = {17}
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@Article{         morel.berthon_89,
  author        = {A. Morel and J.-F. Berthon},
  title         = {Surface pigments, algal biomass profiles, and potential
                  production of the euphotic layer: Relationships
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  journal       = {Limnology and Oceanography},
  publisher     = {Wiley},
  year          = {1989},
  month         = {dec},
  doi           = {10.4319/lo.1989.34.8.1545},
  url           = {http://dx.doi.org/10.4319/lo.1989.34.8.1545},
  pages         = {1545--1562},
  volume        = {34},
  number        = {8},
  issn          = {0024-3590}
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@Article{         morel.maritorena_01,
  author        = {A. Morel and S. Maritorena},
  title         = {Bio-optical properties of oceanic waters: {A}
                  reappraisal},
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  publisher     = {American Geophysical Union (AGU)},
  year          = {2001},
  month         = {apr},
  doi           = {10.1029/2000jc000319},
  url           = {http://dx.doi.org/10.1029/2000jc000319},
  pages         = {7163--7180},
  volume        = {106},
  number        = {C4},
  issn          = {0148-0227}
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@Article{         morel_88,
  author        = {A. Morel},
  title         = {Optical modeling of the upper ocean in relation to its
                  biogenous matter content (case {I} waters)},
  journal       = {Journal of Geophysical Research},
  publisher     = {American Geophysical Union (AGU)},
  year          = {1988},
  doi           = {10.1029/jc093ic09p10749},
  url           = {http://dx.doi.org/10.1029/jc093ic09p10749},
  pages         = {10749--10768},
  volume        = {93},
  number        = {C9},
  issn          = {0148-0227}
}

@Article{         murray_96,
  author        = {R. J. Murray},
  title         = {Explicit Generation of Orthogonal Grids for Ocean Models},
  journal       = {Journal of Computational Physics},
  publisher     = {Elsevier BV},
  year          = {1996},
  month         = {jul},
  doi           = {10.1006/jcph.1996.0136},
  url           = {http://dx.doi.org/10.1006/jcph.1996.0136},
  pages         = {251--273},
  volume        = {126},
  number        = {2},
  issn          = {0021-9991}
}

@Article{         oey_06,
  author        = {L.-Y. Oey},
  title         = {An {OGCM} with movable land-sea boundaries},
  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2006},
  month         = {jan},
  doi           = {10.1016/j.ocemod.2006.01.001},
  url           = {http://dx.doi.org/10.1016/j.ocemod.2006.01.001},
  pages         = {176--195},
  volume        = {13},
  number        = {2},
  issn          = {1463-5003}
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@Article{         osborn_80,
  author        = {T. R. Osborn},
  title         = {Estimates of the local rate of vertical diffusion from
                  dissipation measurements},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1980},
  month         = {jan},
  doi           = {10.1175/1520-0485(1980)010<0083:eotlro>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1980)010<0083:eotlro>2.0.co;2},
  pages         = {83--89},
  volume        = {10},
  number        = {1},
  issn          = {1520-0485}
}

@Article{         pacanowski.gnanadesikan_98,
  author        = {R. C. Pacanowski and A. Gnanadesikan},
  title         = {Transient response in a z-level ocean model that resolves
                  topography with partial-cells},
  journal       = {Monthly Weather Review},
  publisher     = {American Meteorological Society},
  year          = {1998},
  month         = {dec},
  doi           = {10.1175/1520-0493(1998)126<3248:triazl>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0493(1998)126<3248:triazl>2.0.co;2},
  pages         = {3248--3270},
  volume        = {126},
  number        = {12},
  issn          = {1520-0493}
}

@Article{         pacanowski.philander_81,
  author        = {R. C. Pacanowski and S. G. H. Philander},
  title         = {Parameterization of Vertical Mixing in Numerical Models of
                  Tropical Oceans},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1981},
  month         = {nov},
  doi           = {10.1175/1520-0485(1981)011<1443:povmin>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1981)011<1443:povmin>2.0.co;2},
  pages         = {1443--1451},
  volume        = {11},
  number        = {11},
  issn          = {1520-0485}
}

@Article{         paulson.simpson_77,
  author        = {C. A. Paulson and J. J. Simpson},
  title         = {Irradiance Measurements in the Upper Ocean},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1977},
  month         = {nov},
  doi           = {10.1175/1520-0485(1977)007<0952:imituo>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1977)007<0952:imituo>2.0.co;2},
  pages         = {952--956},
  volume        = {7},
  number        = {6},
  issn          = {1520-0485}
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@Article{         penduff.sommer.ea_07,
  author        = {T. Penduff and J. Le Sommer and B. Barnier and A.-M.
                  Tr\'{e}guier and J.-M. Molines and G. Madec},
  title         = {Influence of numerical schemes on current-topography
                  interactions in 1/4\deg global ocean simulations},
  journal       = {Ocean Science},
  publisher     = {Copernicus GmbH},
  year          = {2007},
  month         = {dec},
  doi           = {10.5194/os-3-509-2007},
  url           = {http://dx.doi.org/10.5194/os-3-509-2007},
  pages         = {509--524},
  volume        = {3},
  number        = {4},
  issn          = {1812-0792}
}

@Article{         phillips_59,
  author        = {R. S. Phillips},
  title         = {Dissipative operators and hyperbolic systems of partial
                  differential equations},
  journal       = {Transactions of the American Mathematical Society},
  publisher     = {American Mathematical Society (AMS)},
  year          = {1959},
  month         = {feb},
  doi           = {10.1090/s0002-9947-1959-0104919-1},
  url           = {http://dx.doi.org/10.1090/S0002-9947-1959-0104919-1},
  pages         = {193--254},
  volume        = {90},
  number        = {2},
  issn          = {0002-9947}
}

@Article{         redi_82,
  author        = {M. H. Redi},
  title         = {Oceanic isopycnal mixing by coordinate rotation},
  journal       = {Journal of Physical Oceanography},
  publisher     = {American Meteorological Society},
  year          = {1982},
  month         = {oct},
  doi           = {10.1175/1520-0485(1982)012<1154:oimbcr>2.0.co;2},
  url           = {http://dx.doi.org/10.1175/1520-0485(1982)012<1154:oimbcr>2.0.co;2},
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  volume        = {12},
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  issn          = {1520-0485}
}

@Book{            richtmyer.morton_67,
  author        = {R. D. Richtmyer and K. W. Morton},
  booktitle     = {Difference methods for initial-value problems},
  publisher     = {Interscience},
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}

@Article{         robert_66,
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@Article{         rodgers.aumont.ea_14,
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  volume        = {11},
  number        = {15},
  issn          = {1726-4189}
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@Article{         rodi_87,
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  volume        = {90},
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@Article{         roquet.madec.ea_15*1,
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  issn          = {1520-0485}
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@Article{         roullet.madec_00,
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@Article{         saunders_67,
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@Article{         shchepetkin.mcwilliams_05,
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  number        = {4},
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@InBook{          shchepetkin.mcwilliams_09,
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  editor        = {R. M. Temam and J. J. Tribbia},
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  title         = {Computational kernel algorithms for fine-scale,
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  chapter       = {2},
  series        = {Handbook of Numerical Analysis},
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  isbn          = {9780444518934}
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@Article{         siddorn.furner_13,
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  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2013},
  month         = {jun},
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  url           = {http://dx.doi.org/10.1016/j.ocemod.2013.02.001},
  pages         = {1--13},
  volume        = {66},
  issn          = {1463-5003}
}

@Article{         simmons.jayne.ea_04,
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  volume        = {6},
  number        = {3-4},
  issn          = {1463-5003}
}

@Article{         song.haidvogel_94,
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  volume        = {115},
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  issn          = {0021-9991}
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@Article{         song_98,
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  url           = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008},
  pages         = {3029--3042},
  volume        = {51},
  number        = {25-26},
  issn          = {0967-0645}
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@Article{         st-laurent.simmons.ea_02,
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  volume        = {29},
  number        = {23},
  issn          = {0094-8276}
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@Article{         stacey_99,
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@Article{         steele.morley.ea_01,
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  issn          = {1520-0442}
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@Article{         stein.stein_92,
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  title         = {On the theory of oscillatory waves},
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@Article{         takaya.bidlot.ea_10,
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  pages         = {C06009},
  volume        = {115},
  number        = {C6},
  issn          = {0148-0227}
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@Article{         talagrand_72,
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  pages         = {1571--1574},
  volume        = {29},
  number        = {8},
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@Manual{          teos_10,
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@Article{         treguier.dukowicz.ea_96,
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  pages         = {20877--20881},
  volume        = {101},
  number        = {C9},
  issn          = {0148-0227}
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@Article{         treguier.held.ea_97,
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@Article{         treguier_92,
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  number        = {2},
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@Article{         umlauf.burchard_05,
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  publisher     = {Elsevier BV},
  year          = {2005},
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  doi           = {10.1016/j.csr.2004.08.004},
  url           = {http://dx.doi.org/10.1016/j.csr.2004.08.004},
  pages         = {795--827},
  volume        = {25},
  number        = {7-8},
  issn          = {0278-4343}
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@Book{            vallis_06,
  author        = {G. K. Vallis},
  booktitle     = {Atmospheric and Oceanic Fluid Dynamics},
  publisher     = {Cambridge University Press},
  year          = {2006},
  doi           = {10.1017/cbo9780511790447},
  url           = {http://dx.doi.org/10.1017/cbo9780511790447},
  isbn          = {9780511790447}
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@Article{         vancoppenolle.fichefet.ea_09,
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  url           = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005},
  pages         = {33--53},
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  number        = {1-2},
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@Article{         vancoppenolle.fichefet.ea_09*1,
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  volume        = {27},
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@Article{         warner.defne.ea_13,
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  volume        = {58},
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@Article{         warner.sherwood.ea_05,
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  journal       = {Ocean Modelling},
  publisher     = {Elsevier BV},
  year          = {2005},
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  url           = {http://dx.doi.org/10.1016/j.ocemod.2003.12.003},
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  number        = {1-2},
  issn          = {1463-5003}
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@Article{         weatherly_84,
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@Article{         weaver.eby_97,
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@Article{         webb.cuevas.ea_98,
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  pages         = {1171--1187},
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  number        = {5},
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