[2496] | 1 | MODULE nemogcm |
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[2442] | 2 | !!====================================================================== |
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[2496] | 3 | !! *** MODULE nemogcm *** |
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| 4 | !! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice) |
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[2442] | 5 | !!====================================================================== |
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[9598] | 6 | !! History : 3.6 ! 2015-12 (A. Ryan) Original code (from OCE/) |
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[7646] | 7 | !! 4.0 ! 2016-11 (G. Madec, S. Flavoni) domain configuration / user defined interface |
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[1593] | 8 | !!---------------------------------------------------------------------- |
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[3] | 9 | |
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| 10 | !!---------------------------------------------------------------------- |
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[7646] | 11 | !! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice |
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| 12 | !! nemo_init : initialization of the NEMO system |
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| 13 | !! nemo_ctl : initialisation of the contol print |
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| 14 | !! nemo_closefile: close remaining open files |
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| 15 | !! nemo_alloc : dynamical allocation |
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[3] | 16 | !!---------------------------------------------------------------------- |
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[7646] | 17 | USE step_oce ! module used in the ocean time stepping module (step.F90) |
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| 18 | USE domain ! domain initialization (dom_init & dom_cfg routines) |
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| 19 | USE istate ! initial state setting (istate_init routine) |
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| 20 | USE phycst ! physical constant (par_cst routine) |
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| 21 | USE step ! NEMO time-stepping (stp routine) |
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| 22 | USE cpl_oasis3 ! OASIS3 coupling |
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| 23 | USE diaobs ! Observation diagnostics (dia_obs_init routine) |
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[3625] | 24 | #if defined key_nemocice_decomp |
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| 25 | USE ice_domain_size, only: nx_global, ny_global |
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| 26 | #endif |
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[7646] | 27 | ! ! Stand Alone Observation operator modules |
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| 28 | USE sao_data |
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| 29 | USE sao_intp |
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| 30 | ! |
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[13286] | 31 | USE prtctl ! Print control |
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[12641] | 32 | USE in_out_manager ! I/O manager |
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[7646] | 33 | USE lib_mpp ! distributed memory computing |
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| 34 | USE mppini ! shared/distributed memory setting (mpp_init routine) |
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[13286] | 35 | USE lbcnfd , ONLY : isendto, nsndto ! Setup of north fold exchanges |
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[7646] | 36 | USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined) |
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[14239] | 37 | #if defined key_xios |
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[7646] | 38 | USE xios ! xIOserver |
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[1359] | 39 | #endif |
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[13286] | 40 | USE halo_mng |
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[268] | 41 | |
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[2715] | 42 | IMPLICIT NONE |
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[3] | 43 | PRIVATE |
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| 44 | |
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[4829] | 45 | PUBLIC nemo_gcm ! called by model.F90 |
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[2496] | 46 | PUBLIC nemo_init ! needed by AGRIF |
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[3764] | 47 | PUBLIC nemo_alloc ! needed by TAM |
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[467] | 48 | |
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[2498] | 49 | CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing |
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[1593] | 50 | |
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[3] | 51 | !!---------------------------------------------------------------------- |
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[9598] | 52 | !! NEMO/OCE 4.0 , NEMO Consortium (2018) |
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[2392] | 53 | !! $Id$ |
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[10068] | 54 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[3] | 55 | !!---------------------------------------------------------------------- |
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| 56 | CONTAINS |
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| 57 | |
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[4120] | 58 | SUBROUTINE nemo_gcm |
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| 59 | !!---------------------------------------------------------------------- |
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| 60 | !! *** SUBROUTINE offline_obs_oper *** |
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| 61 | !! |
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| 62 | !! ** Purpose : To use NEMO components to interpolate model fields |
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| 63 | !! to observation space. |
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| 64 | !! |
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| 65 | !! ** Method : 1. Initialise NEMO |
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| 66 | !! 2. Initialise offline obs_oper |
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| 67 | !! 3. Cycle through match ups |
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| 68 | !! 4. Write results to file |
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| 69 | !!---------------------------------------------------------------------- |
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[7646] | 70 | ! |
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| 71 | CALL nemo_init ! Initialise NEMO |
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| 72 | ! |
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| 73 | CALL sao_data_init ! Initialise Stand Alone Observation operator data |
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| 74 | ! |
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| 75 | CALL dia_obs_init ! Initialise obs_operator |
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| 76 | ! |
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| 77 | CALL sao_interp ! Interpolate to observation space |
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| 78 | ! |
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| 79 | CALL dia_obs_wri ! Pipe to output files |
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| 80 | ! |
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| 81 | CALL dia_obs_dealloc ! Reset the obs_oper between |
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| 82 | ! |
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| 83 | IF(lk_mpp) CALL mppstop ! Safely stop MPI (end mpp communications) |
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| 84 | ! |
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[4120] | 85 | END SUBROUTINE nemo_gcm |
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[389] | 86 | |
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[4829] | 87 | |
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[2496] | 88 | SUBROUTINE nemo_init |
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[389] | 89 | !!---------------------------------------------------------------------- |
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[2496] | 90 | !! *** ROUTINE nemo_init *** |
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[389] | 91 | !! |
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[2496] | 92 | !! ** Purpose : initialization of the NEMO GCM |
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[389] | 93 | !!---------------------------------------------------------------------- |
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[7646] | 94 | INTEGER :: ios, ilocal_comm ! local integer |
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[5600] | 95 | ! |
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[13286] | 96 | NAMELIST/namctl/ sn_cfctl, ln_timing, ln_diacfl, & |
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| 97 | & nn_isplt, nn_jsplt, nn_ictls, nn_ictle, nn_jctls, nn_jctle |
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[9436] | 98 | NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr |
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[3] | 99 | !!---------------------------------------------------------------------- |
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[1593] | 100 | ! |
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[5600] | 101 | cxios_context = 'nemo' |
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[13286] | 102 | nn_hls = 1 |
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[2496] | 103 | ! |
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[11536] | 104 | ! !-------------------------------------------------! |
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| 105 | ! ! set communicator & select the local rank ! |
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| 106 | ! ! must be done as soon as possible to get narea ! |
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| 107 | ! !-------------------------------------------------! |
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[1593] | 108 | ! |
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[14239] | 109 | #if defined key_xios |
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[2200] | 110 | IF( Agrif_Root() ) THEN |
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[5600] | 111 | IF( lk_oasis ) THEN |
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[11536] | 112 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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| 113 | CALL xios_initialize( "not used" , local_comm =ilocal_comm ) ! send nemo communicator to xios |
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[5600] | 114 | ELSE |
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[11536] | 115 | CALL xios_initialize( "for_xios_mpi_id", return_comm=ilocal_comm ) ! nemo local communicator given by xios |
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[5600] | 116 | ENDIF |
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[2200] | 117 | ENDIF |
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[11536] | 118 | CALL mpp_start( ilocal_comm ) |
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[532] | 119 | #else |
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[5600] | 120 | IF( lk_oasis ) THEN |
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| 121 | IF( Agrif_Root() ) THEN |
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[11536] | 122 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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[5600] | 123 | ENDIF |
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[11536] | 124 | CALL mpp_start( ilocal_comm ) |
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[5600] | 125 | ELSE |
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[11536] | 126 | CALL mpp_start( ) |
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[2236] | 127 | ENDIF |
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[532] | 128 | #endif |
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[11536] | 129 | ! |
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| 130 | narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 ) |
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| 131 | lwm = (narea == 1) ! control of output namelists |
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| 132 | ! |
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| 133 | ! !---------------------------------------------------------------! |
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| 134 | ! ! Open output files, reference and configuration namelist files ! |
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| 135 | ! !---------------------------------------------------------------! |
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| 136 | ! |
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| 137 | ! open ocean.output as soon as possible to get all output prints (including errors messages) |
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| 138 | IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 139 | ! open reference and configuration namelist files |
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[12377] | 140 | CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm ) |
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| 141 | CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm ) |
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[11536] | 142 | IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 143 | ! open /dev/null file to be able to supress output write easily |
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[12641] | 144 | IF( Agrif_Root() ) THEN |
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[11536] | 145 | CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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[12641] | 146 | #ifdef key_agrif |
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| 147 | ELSE |
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| 148 | numnul = Agrif_Parent(numnul) |
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| 149 | #endif |
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| 150 | ENDIF |
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[11536] | 151 | ! |
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| 152 | ! !--------------------! |
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[12377] | 153 | ! ! Open listing units ! -> need sn_cfctl from namctl to define lwp |
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[11536] | 154 | ! !--------------------! |
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| 155 | ! |
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| 156 | READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 ) |
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| 157 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' ) |
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| 158 | READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 ) |
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| 159 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' ) |
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| 160 | ! |
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[12377] | 161 | ! finalize the definition of namctl variables |
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[12933] | 162 | IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) & |
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| 163 | & CALL nemo_set_cfctl( sn_cfctl, .FALSE. ) |
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[11536] | 164 | ! |
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[12377] | 165 | lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print |
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| 166 | ! |
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[11536] | 167 | IF(lwp) THEN ! open listing units |
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[1593] | 168 | ! |
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[11536] | 169 | IF( .NOT. lwm ) & ! alreay opened for narea == 1 |
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| 170 | & CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE., narea ) |
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[1593] | 171 | ! |
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[1579] | 172 | WRITE(numout,*) |
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[11536] | 173 | WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC' |
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[1593] | 174 | WRITE(numout,*) ' NEMO team' |
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[5042] | 175 | WRITE(numout,*) ' Stand Alone Observation operator' |
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[10570] | 176 | WRITE(numout,*) ' NEMO version 4.0 (2019) ' |
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[1579] | 177 | WRITE(numout,*) |
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[10570] | 178 | WRITE(numout,*) " ._ ._ ._ ._ ._ " |
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| 179 | WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ " |
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[1579] | 180 | WRITE(numout,*) |
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[10570] | 181 | WRITE(numout,*) " o _, _, " |
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| 182 | WRITE(numout,*) " o .' ( .-' / " |
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| 183 | WRITE(numout,*) " o _/..._'. .' / " |
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| 184 | WRITE(numout,*) " ( o .-'` ` '-./ _.' " |
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| 185 | WRITE(numout,*) " ) ( o) ;= <_ ( " |
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| 186 | WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) " |
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| 187 | WRITE(numout,*) " ) ) \) |`\ \) '. \ ( ( " |
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| 188 | WRITE(numout,*) " ( ( \_/ '-._\ ) ) " |
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[11536] | 189 | WRITE(numout,*) " ) ) jgs ` ( ( " |
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[10570] | 190 | WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ " |
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| 191 | WRITE(numout,*) |
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[1593] | 192 | ! |
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[7646] | 193 | WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 194 | ! |
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[473] | 195 | ENDIF |
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[11536] | 196 | ! |
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| 197 | IF(lwm) WRITE( numond, namctl ) |
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| 198 | ! |
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| 199 | ! !------------------------------------! |
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| 200 | ! ! Set global domain size parameters ! |
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| 201 | ! !------------------------------------! |
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| 202 | ! |
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| 203 | READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 ) |
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| 204 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' ) |
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| 205 | READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 ) |
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| 206 | 904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' ) |
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| 207 | ! |
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| 208 | IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file |
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[13286] | 209 | CALL domain_cfg ( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, jperio ) |
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[11536] | 210 | ELSE ! user-defined namelist |
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[13286] | 211 | CALL usr_def_nam( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, jperio ) |
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[11536] | 212 | ENDIF |
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| 213 | ! |
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| 214 | IF(lwm) WRITE( numond, namcfg ) |
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| 215 | ! |
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| 216 | ! !-----------------------------------------! |
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| 217 | ! ! mpp parameters and domain decomposition ! |
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| 218 | ! !-----------------------------------------! |
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| 219 | CALL mpp_init |
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[2715] | 220 | |
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[13286] | 221 | CALL halo_mng_init() |
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[7646] | 222 | ! Now we know the dimensions of the grid and numout has been set: we can allocate arrays |
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[2715] | 223 | CALL nemo_alloc() |
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| 224 | |
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[2496] | 225 | ! !-------------------------------! |
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| 226 | ! ! NEMO general initialization ! |
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| 227 | ! !-------------------------------! |
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[473] | 228 | |
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[9436] | 229 | CALL nemo_ctl ! Control prints |
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[2382] | 230 | ! |
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[9436] | 231 | ! ! General initialization |
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| 232 | IF( ln_timing ) CALL timing_init ! timing |
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| 233 | IF( ln_timing ) CALL timing_start( 'nemo_init') |
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[3294] | 234 | ! |
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[9019] | 235 | CALL phy_cst ! Physical constants |
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| 236 | CALL eos_init ! Equation of state |
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[13970] | 237 | CALL dom_init( Nbb, Nnn, Naa ) ! Domain |
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[413] | 238 | |
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[3294] | 239 | |
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[12377] | 240 | IF( sn_cfctl%l_prtctl ) & |
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| 241 | & CALL prt_ctl_init ! Print control |
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[2027] | 242 | |
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[12377] | 243 | CALL istate_init ! ocean initial state (Dynamics and tracers) |
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[2496] | 244 | END SUBROUTINE nemo_init |
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[467] | 245 | |
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| 246 | |
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[2496] | 247 | SUBROUTINE nemo_ctl |
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[467] | 248 | !!---------------------------------------------------------------------- |
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[2496] | 249 | !! *** ROUTINE nemo_ctl *** |
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[467] | 250 | !! |
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[3764] | 251 | !! ** Purpose : control print setting |
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[467] | 252 | !! |
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[12377] | 253 | !! ** Method : - print namctl and namcfg information and check some consistencies |
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[467] | 254 | !!---------------------------------------------------------------------- |
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[2442] | 255 | ! |
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[2496] | 256 | IF(lwp) THEN ! control print |
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[531] | 257 | WRITE(numout,*) |
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[7646] | 258 | WRITE(numout,*) 'nemo_ctl: Control prints' |
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[9436] | 259 | WRITE(numout,*) '~~~~~~~~' |
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[1593] | 260 | WRITE(numout,*) ' Namelist namctl' |
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[10570] | 261 | WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat |
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| 262 | WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat |
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| 263 | WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout |
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| 264 | WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout |
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[12377] | 265 | WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl |
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| 266 | WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc |
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| 267 | WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout |
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[10570] | 268 | WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin |
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| 269 | WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax |
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| 270 | WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr |
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| 271 | WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr |
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[9019] | 272 | WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing |
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| 273 | WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl |
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[531] | 274 | ENDIF |
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[2442] | 275 | ! |
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[13286] | 276 | IF( .NOT.ln_read_cfg ) ln_closea = .false. ! dealing possible only with a domcfg file |
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[4829] | 277 | IF(lwp) THEN ! control print |
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| 278 | WRITE(numout,*) |
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| 279 | WRITE(numout,*) ' Namelist namcfg' |
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[7646] | 280 | WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg |
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| 281 | WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg) |
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[9436] | 282 | WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea |
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[10570] | 283 | WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg |
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[7646] | 284 | WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out) |
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| 285 | WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr |
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[4829] | 286 | ENDIF |
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[9436] | 287 | ! |
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[10570] | 288 | IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', & |
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| 289 | & 'Compile with key_nosignedzero enabled:', & |
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| 290 | & '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' ) |
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[3764] | 291 | ! |
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[2496] | 292 | END SUBROUTINE nemo_ctl |
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[467] | 293 | |
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| 294 | |
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[2496] | 295 | SUBROUTINE nemo_closefile |
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[467] | 296 | !!---------------------------------------------------------------------- |
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[2496] | 297 | !! *** ROUTINE nemo_closefile *** |
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[467] | 298 | !! |
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| 299 | !! ** Purpose : Close the files |
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| 300 | !!---------------------------------------------------------------------- |
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[1593] | 301 | ! |
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| 302 | IF( lk_mpp ) CALL mppsync |
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| 303 | ! |
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[1685] | 304 | CALL iom_close ! close all input/output files managed by iom_* |
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[1593] | 305 | ! |
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[4829] | 306 | IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file |
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[9019] | 307 | IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file |
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[4829] | 308 | IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist |
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| 309 | IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist |
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| 310 | IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution) |
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| 311 | IF( numout /= 6 ) CLOSE( numout ) ! standard model output file |
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| 312 | IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports |
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| 313 | IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports |
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| 314 | IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports |
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[1593] | 315 | ! |
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[2442] | 316 | numout = 6 ! redefine numout in case it is used after this point... |
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| 317 | ! |
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[2496] | 318 | END SUBROUTINE nemo_closefile |
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[467] | 319 | |
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[2715] | 320 | |
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| 321 | SUBROUTINE nemo_alloc |
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| 322 | !!---------------------------------------------------------------------- |
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| 323 | !! *** ROUTINE nemo_alloc *** |
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| 324 | !! |
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[14227] | 325 | !! ** Purpose : Allocate all the dynamic arrays of the OCE modules |
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[2715] | 326 | !! |
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| 327 | !! ** Method : |
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| 328 | !!---------------------------------------------------------------------- |
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| 329 | USE diawri , ONLY: dia_wri_alloc |
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| 330 | USE dom_oce , ONLY: dom_oce_alloc |
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| 331 | ! |
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| 332 | INTEGER :: ierr |
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| 333 | !!---------------------------------------------------------------------- |
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| 334 | ! |
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[3764] | 335 | ierr = oce_alloc () ! ocean |
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[2715] | 336 | ierr = ierr + dia_wri_alloc () |
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| 337 | ierr = ierr + dom_oce_alloc () ! ocean domain |
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| 338 | ! |
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[10425] | 339 | CALL mpp_sum( 'nemogcm', ierr ) |
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[2715] | 340 | IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc : unable to allocate standard ocean arrays' ) |
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| 341 | ! |
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| 342 | END SUBROUTINE nemo_alloc |
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| 343 | |
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[12933] | 344 | SUBROUTINE nemo_set_cfctl(sn_cfctl, setto ) |
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[10570] | 345 | !!---------------------------------------------------------------------- |
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| 346 | !! *** ROUTINE nemo_set_cfctl *** |
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| 347 | !! |
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| 348 | !! ** Purpose : Set elements of the output control structure to setto. |
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| 349 | !! |
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| 350 | !! ** Method : Note this routine can be used to switch on/off some |
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[12933] | 351 | !! types of output for selected areas. |
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[10570] | 352 | !!---------------------------------------------------------------------- |
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[12933] | 353 | TYPE(sn_ctl), INTENT(inout) :: sn_cfctl |
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| 354 | LOGICAL , INTENT(in ) :: setto |
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[10570] | 355 | !!---------------------------------------------------------------------- |
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[12933] | 356 | sn_cfctl%l_runstat = setto |
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| 357 | sn_cfctl%l_trcstat = setto |
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[10570] | 358 | sn_cfctl%l_oceout = setto |
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| 359 | sn_cfctl%l_layout = setto |
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[12377] | 360 | sn_cfctl%l_prtctl = setto |
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| 361 | sn_cfctl%l_prttrc = setto |
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| 362 | sn_cfctl%l_oasout = setto |
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[10570] | 363 | END SUBROUTINE nemo_set_cfctl |
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| 364 | |
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[3] | 365 | !!====================================================================== |
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[2496] | 366 | END MODULE nemogcm |
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[4829] | 367 | |
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