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namelist_pisces in branches/2013/dev_r3940_CNRS4_IOCRS/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00 – NEMO

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source: branches/2013/dev_r3940_CNRS4_IOCRS/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces @ 4064

Last change on this file since 4064 was 4064, checked in by cetlod, 11 years ago
branch dev_r3940_CNRS4_IOCRS: some improvments+ minor bug corrections
Property svn:keywords set to `Id`
File size: 16.9 KB

Rev	Line
[1121]	1	!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
	2	!! PISCES : 1 - air-sea exchange (nampisext)
	3	!! namelists 2 - biological parameters (nampisbio)
	4	!! 3 - parameters for nutrient limitations (nampislim)
	5	!! 4 - parameters for phytoplankton (nampisprod,nampismort)
	6	!! 5 - parameters for zooplankton (nampismes,nampiszoo)
	7	!! 6 - parameters for remineralization (nampisrem)
	8	!! 7 - parameters for calcite chemistry (nampiscal)
	9	!! 8 - parameters for inputs deposition (nampissed)
	10	!! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs)
	11	!! 10 - additional 2D/3D diagnostics (nampisdia)
[1293]	12	!! 11 - Damping (nampisdmp)
[1086]	13	!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
[1121]	14	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	15	&nampisext ! air-sea exchange
	16	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3294]	17	ln_co2int = .false. ! read atm pco2 from a file (T) or constant (F)
[3632]	18	atcco2 = 280. ! Constant value atmospheric pCO2 - ln_co2int = F
[3294]	19	clname = 'atcco2.txt' ! Name of atm pCO2 file - ln_co2int = T
	20	nn_offset = 0 ! Offset model-data start year - ln_co2int = T
	21	! ! If your model year is iyy, nn_offset=(years(1)-iyy)
	22	! ! then the first atmospheric CO2 record read is at years(1)
[1086]	23	/
[1121]	24	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[3294]	25	&nampisatm ! Atmospheric prrssure
	26	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	27	! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation !
	28	! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing !
	29	sn_patm = 'presatm' , -1 , 'patm' , .true. , .true. , 'yearly' , '' , ''
	30	cn_dir = './' ! root directory for the location of the dynamical files
	31	!
[3904]	32	ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T)
[3294]	33	/
	34	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[1121]	35	&nampisbio ! biological parameters
	36	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3680]	37	nrdttrc = 1 ! time step frequency for biology
[3294]	38	wsbio = 2. ! POC sinking speed
[3632]	39	xkmort = 2.E-7 ! half saturation constant for mortality
[3294]	40	ferat3 = 10.E-6 ! Fe/C in zooplankton
[3904]	41	wsbio2 = 50. ! Big particles sinking speed
[3680]	42	niter1max = 1 ! Maximum number of iterations for POC
	43	niter2max = 1 ! Maximum number of iterations for GOC
[1086]	44	/
[1121]	45	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	46	&nampislim ! parameters for nutrient limitations
	47	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3680]	48	concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton
[3904]	49	concdno3 = 3.E-6 ! Phosphate half saturation for diatoms
[3680]	50	concnnh4 = 1.E-7 ! NH4 half saturation for phyto
[3904]	51	concdnh4 = 3.E-7 ! NH4 half saturation for diatoms
	52	concnfer = 1.E-9 ! Iron half saturation for phyto
	53	concdfer = 3.E-9 ! Iron half saturation for diatoms
[3680]	54	concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria
	55	concbnh4 = 2.5E-8 ! NH4 half saturation for phyto
	56	concbno3 = 2.5E-7 ! Phosphate half saturation for diatoms
[3632]	57	xsizedia = 1.E-6 ! Minimum size criteria for diatoms
[3294]	58	xsizephy = 1.E-6 ! Minimum size criteria for phyto
[3680]	59	xsizern = 3.0 ! Size ratio for nanophytoplankton
	60	xsizerd = 3.0 ! Size ratio for diatoms
[1121]	61	xksi1 = 2.E-6 ! half saturation constant for Si uptake
[3904]	62	xksi2 = 20E-6 ! half saturation constant for Si/C
[1121]	63	xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization
[3294]	64	qnfelim = 7.E-6 ! Optimal quota of phyto
	65	qdfelim = 7.E-6 ! Optimal quota of diatoms
[3680]	66	caco3r = 0.3 ! mean rain ratio
[1086]	67	/
[1121]	68	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[3680]	69	&nampisopt ! parameters for optics
	70	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	71	! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation !
	72	! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing !
	73	sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , ''
	74	cn_dir = './' ! root directory for the location of the dynamical files
	75	ln_varpar = .true. ! boolean for PAR variable
	76	parlux = 0.43 ! Fraction of shortwave as PAR
	77	/
	78	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[1121]	79	&nampisprod ! parameters for phytoplankton growth
	80	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3632]	81	pislope = 2. ! P-I slope
[3294]	82	pislope2 = 2. ! P-I slope for diatoms
[1121]	83	excret = 0.05 ! excretion ratio of phytoplankton
	84	excret2 = 0.05 ! excretion ratio of diatoms
[3680]	85	ln_newprod = .true. ! Enable new parame. of production (T/F)
[3904]	86	bresp = 0.0333 ! Basal respiration rate
[1121]	87	chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton
[3632]	88	chlcdm = 0.05 ! Minimum Chl/C in diatoms
[3680]	89	chlcmin = 0.004 ! Maximum Chl/c in phytoplankton
[3294]	90	fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton
	91	fecdm = 40E-6 ! Minimum Fe/C in diatoms
[3680]	92	grosip = 0.159 ! mean Si/C ratio
[1086]	93	/
[1121]	94	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	95	&nampismort ! parameters for phytoplankton sinks
	96	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3680]	97	wchl = 0.01 ! quadratic mortality of phytoplankton
	98	wchld = 0.01 ! maximum quadratic mortality of diatoms
	99	wchldm = 0.03 ! maximum quadratic mortality of diatoms
[1121]	100	mprat = 0.01 ! phytoplankton mortality rate
	101	mprat2 = 0.01 ! Diatoms mortality rate
[1086]	102	/
[1121]	103	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	104	&nampismes ! parameters for mesozooplankton
	105	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3680]	106	part2 = 0.75 ! part of calcite not dissolved in mesozoo guts
	107	grazrat2 = 0.75 ! maximal mesozoo grazing rate
[3904]	108	resrat2 = 0.01 ! exsudation rate of mesozooplankton
[1121]	109	mzrat2 = 0.03 ! mesozooplankton mortality rate
	110	xprefc = 1. ! zoo preference for phyto
[3294]	111	xprefp = 0.3 ! zoo preference for POC
[1121]	112	xprefz = 1. ! zoo preference for zoo
[3294]	113	xprefpoc = 0.3 ! zoo preference for poc
	114	xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton
	115	xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton
[3632]	116	xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton
[3294]	117	xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton
[3680]	118	xthresh2 = 3E-7 ! Food threshold for grazing
[1121]	119	xkgraz2 = 20.E-6 ! half sturation constant for meso grazing
[3904]	120	epsher2 = 0.4 ! Efficicency of Mesozoo growth
[1121]	121	sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM
	122	unass2 = 0.3 ! non assimilated fraction of P by mesozoo
[3632]	123	grazflux = 2.e3 ! flux-feeding rate
[1086]	124	/
[1121]	125	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	126	&nampiszoo ! parameters for microzooplankton
	127	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3294]	128	part = 0.5 ! part of calcite not dissolved in microzoo gutsa
	129	grazrat = 3.0 ! maximal zoo grazing rate
[3904]	130	resrat = 0.05 ! exsudation rate of zooplankton
[3680]	131	mzrat = 0.004 ! zooplankton mortality rate
[3294]	132	xpref2c = 0.1 ! Microzoo preference for POM
	133	xpref2p = 1. ! Microzoo preference for Nanophyto
[3632]	134	xpref2d = 0.5 ! Microzoo preference for Diatoms
[3294]	135	xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton
[3632]	136	xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton
[3294]	137	xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton
[3680]	138	xthresh = 3.E-7 ! Food threshold for feeding
[3294]	139	xkgraz = 20.E-6 ! half sturation constant for grazing
[3904]	140	epsher = 0.4 ! Efficiency of microzoo growth
[1121]	141	sigma1 = 0.6 ! Fraction of microzoo excretion as DOM
	142	unass = 0.3 ! non assimilated fraction of phyto by zoo
[1086]	143	/
[1121]	144	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[3680]	145	&nampisfer ! parameters for iron chemistry
	146	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	147	ln_fechem = .false. ! complex iron chemistry ( T/F )
[3904]	148	ln_ligvar = .false. ! variable ligand concentration
[3680]	149	xlam1 = 0.005 ! scavenging rate of Iron
	150	xlamdust = 150.0 ! Scavenging rate of dust
	151	ligand = 0.6E-9 ! Ligands concentration
	152	/
	153	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[1121]	154	&nampisrem ! parameters for remineralization
	155	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3904]	156	xremik = 0.3 ! remineralization rate of DOC
[1121]	157	xremip = 0.025 ! remineralisation rate of POC
	158	nitrif = 0.05 ! NH4 nitrification rate
[3294]	159	xsirem = 0.003 ! remineralization rate of Si
[3680]	160	xsiremlab = 0.03 ! fast remineralization rate of Si
	161	xsilab = 0.5 ! Fraction of labile biogenic silica
[3294]	162	oxymin = 1.E-6 ! Half-saturation constant for anoxia
[1086]	163	/
[1121]	164	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	165	&nampiscal ! parameters for Calcite chemistry
	166	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3294]	167	kdca = 6. ! calcite dissolution rate constant (1/time)
[1121]	168	nca = 1. ! order of dissolution reaction (dimensionless)
[1086]	169	/
[1121]	170	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[3680]	171	&nampissbc ! parameters for inputs deposition
[1121]	172	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[3294]	173	! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation !
	174	! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing !
	175	sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , ''
[3680]	176	sn_solub = 'solubility.orca' , -12 , 'solubility1' , .false. , .true. , 'yearly' , '' , ''
	177	sn_riverdic = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , ''
	178	sn_riverdoc = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , ''
	179	sn_riverdin = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , ''
	180	sn_riverdon = 'river.orca' , 120 , 'riverdon' , .true. , .true. , 'yearly' , '' , ''
	181	sn_riverdip = 'river.orca' , 120 , 'riverdip' , .true. , .true. , 'yearly' , '' , ''
	182	sn_riverdop = 'river.orca' , 120 , 'riverdop' , .true. , .true. , 'yearly' , '' , ''
	183	sn_riverdsi = 'river.orca' , 120 , 'riverdsi' , .true. , .true. , 'yearly' , '' , ''
[3294]	184	sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , ''
	185	sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , ''
[3680]	186	sn_hydrofe = 'hydrofe' , -12 , 'epsdb' , .false. , .true. , 'yearly' , '' , ''
[3294]	187	!
	188	cn_dir = './' ! root directory for the location of the dynamical files
	189	ln_dust = .true. ! boolean for dust input from the atmosphere
[3680]	190	ln_solub = .true. ! boolean for variable solubility of atm. Iron
	191	ln_river = .true. ! boolean for river input of nutrients
[1512]	192	ln_ndepo = .true. ! boolean for atmospheric deposition of N
[3294]	193	ln_ironsed = .true. ! boolean for Fe input from sediments
[3680]	194	ln_ironice = .true. ! boolean for Fe input from sea ice
[3824]	195	ln_hydrofe = .false. ! boolean for from hydrothermal vents
	196	sedfeinput = 1.e-9 ! Coastal release of Iron
[3294]	197	dustsolub = 0.02 ! Solubility of the dust
[3680]	198	wdust = 2.0 ! Dust sinking speed
[3824]	199	icefeinput = 15.e-9 ! Iron concentration in sea ice
	200	nitrfix = 1.e-7 ! Nitrogen fixation rate
[3294]	201	diazolight = 50. ! Diazotrophs sensitivity to light (W/m2)
[3824]	202	concfediaz = 1.e-10 ! Diazotrophs half-saturation Cste for Iron
[4064]	203	hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply
[1086]	204	/
[1121]	205	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	206	&nampiskrp ! Kriest parameterization : parameters "key_kriest"
	207	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	208	xkr_eta = 1.17 ! Sinking exponent
	209	xkr_zeta = 2.28 ! N content exponent
[3680]	210	xkr_ncontent = 5.7E-6 ! N content factor
[1121]	211	xkr_mass_min = 0.0002 ! Minimum mass for Aggregates
	212	xkr_mass_max = 1. ! Maximum mass for Aggregates
[1086]	213	/
[1121]	214	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	215	&nampiskrs ! Kriest parameterization : size classes "key_kriest"
	216	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	217	xkr_sfact = 942. ! Sinking factor
	218	xkr_stick = 0.5 ! Stickiness
	219	xkr_nnano = 2.337 ! Nbr of cell in nano size class
	220	xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class
	221	xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class
	222	xkr_naggr = 9.877 ! Nbr of cell in aggregates size class
	223	/
	224	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
[3294]	225	&nampisdia ! additional 2D/3D tracers diagnostics
[1121]	226	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	227	! ! name ! title of the field ! units !
	228	! ! ! ! !
	229	pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s '
	230	pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s '
	231	pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm'
	232	pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm '
	233	pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s '
	234	pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s '
	235	pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s '
	236	pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s '
	237	pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s '
	238	pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s '
	239	pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm '
	240	pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s '
	241	pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s '
	242	pisdia3d(1) = 'PH ' , 'PH ', '- '
	243	pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l '
	244	pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l '
	245	pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 '
	246	pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s '
	247	pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s '
[1563]	248	pisdia3d(7) = 'PPNEWN ' , 'New Primary production of nano ', 'molC/m3/s '
	249	pisdia3d(8) = 'PPNEWD ' , 'New Primary production of diat ', 'molC/m3/s '
[1121]	250	pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s '
	251	pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s '
	252	pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s '
[1086]	253	/
[1293]	254	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	255	&nampisdmp ! Damping
	256	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
	257	ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value
[3294]	258	nn_pisdmp = 5475 ! Frequency of Relaxation
[1293]	259	/
[3294]	260	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
	261	&nampismass ! Mass conservation
	262	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
[4029]	263	ln_check_mass = .false. ! Check mass conservation
[3294]	264	/

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