source: branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM/TRUST/trusting_func.sh @ 5452

#!/bin/bash


comments() {
    [ -e ocean.output ] && grep $1 ocean.output
    printf "Comments\n$line\n" | tee mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt
}

get_cpu_time() {
    # Portability !
    real_cpu_time=$( ${JOB_VIEW} ${JOB_ID} | awk 'END{print $9}' )
    printf "Real CPU time\n${real_cpu_time}\n" | tee mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt
}

diff_arch() {
    diff env.log ${REFE_DIR}/env.log
}

diff_inputs() {
    mesg='Same'

    for file in inputs_list.txt $( ls namelist_* ) iodef.xml; do
   diff $file ${REFE_DIR}/$file
   [ $? -ne 0 ] && mesg='Different'
    done

    printf "Input files\n$mesg\n" | tee mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt
}

diff_restart() {
    last_time_step=$( cat ${REFE_DIR}/time.step | tr -d [:space:] )
    echo 'Last time step of standard run: '${last_time_step}

    if [ $( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit ) ]; then
   base_name=$( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit           \
                | awk -F/ '{print $NF}' | sed "s/^\(.*\)$last_time_step\_.*/\1$last_time_step/" )

   for comp in restart restart_ice restart_trc; do
       printf "${base_name}_${comp}.nc: "

       nb_dom=$( find ${TEST_DIR} -name "${base_name}_${comp}_[0-9]*.nc" | wc -l | awk '{print $1}' )
       if [ ${nb_dom} -gt 1 ]; then
      ${NEMO_TRBD}/rebuild_nemo -t $NPROC ${base_name}_$comp ${nb_dom} > /dev/null
       fi

       cmp ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc
       if [ $? -ne 0 ]; then
      export STATUS='FAILED'
      printf "$CDO diffn\n"
      $CDO diffn ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc 2> /dev/null
       else
      printf "identical\n"
       fi

       \rm  ${TEST_DIR}/${base_name}_${comp}_[0-9]*.nc
   done

    else
   printf "no restart files found for comparison\n"
    fi
}

get_soft_rel() {
    for rel in $CDO $COMPILER $MPI $NETCDF; do
                                 arch_rel=$( echo $LOADEDMODULES | sed  "s#.*$rel/\([^:]*\).*#\1#" )
   [ -z "${arch_rel}"  ] && arch_rel=$( echo $PATH          | sed  "s#.*$rel/\([^/]*\).*#\1#" )
   [ $rel == $COMPILER ] && arch_rel=$( $rel --version      | grep -m1 -o ' [0-9.]* '         )
   echo $rel ${arch_rel} >> env.log
    done

    sed -n 4p env.log | sed 'i\Compiler'    > mesg_05_compiler_${CFG_USER}_${CFG_ARCH}.txt
    sed -n 5p env.log | sed 'i\MPI libs'    > mesg_06_mpi_${CFG_USER}_${CFG_ARCH}.txt
    sed -n 6p env.log | sed 'i\NetCDF libs' > mesg_07_netcdf_${CFG_USER}_${CFG_ARCH}.txt
}

get_nemo_rev() {
    svn_opt='status'

    # If -v|--version option has been set, modify svn command
    if [[    $( echo ${NEMO_VERS} | grep  "HEAD\|up\|update"   ) \
     || $( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' )  ]]; then
   rev=$( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) || rev='HEAD'
   svn_cmd='svn update -r '$rev 
    else
   svn_cmd='svn '${svn_opt}
    fi

    rev=0
    for dir in ${DIR_XIOS}  ${NEMO_ARCH} ${NEMO_CONF} ${NEMO_ENGI} \
          ${NEMO_EIOI} ${NEMO_EFCM} ${NEMO_TCMP} ${NEMO_TRBD}  ; do

   # For time being, just get revision number from XIOS
   if [ $dir == ${DIR_XIOS} ]; then
       echo 'XIOS '$( svn info $dir | awk '(NR == 9) {print $NF}' ) >> env.log
       continue
   fi

   ${svn_cmd} $dir
   rev_loc=$( svn info $dir | awk '(NR == 5) {print $NF}' )
   (( ${rev_loc} >= $rev )) && rev=${rev_loc}
    done

    printf "NEMOGCM rev.\n$rev\n" > mesg_02_nemogcm_${CFG_USER}_${CFG_ARCH}.txt
}

mesg_make() {
    paste -d ';' mesg_*_${CFG_USER}_${CFG_ARCH}.txt > trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt
    cat                                               trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt
}

mesg_publish() {
  
if [ $PUBLISH -eq 1 ]; then

  if [ -f ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt ]; then cmd='sed -n 2p'; else cmd='cat'; fi

  $cmd trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt >> ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt

  # Send mail only when FAILED
  if [[ $( grep 'FAILED' mesg_02_status_${CFG_USER}_${CFG_ARCH}.txt ) && ! -z $MAIL ]]; then
      cat << END_MAIL > trusting.mail
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Dear $USER,

The trusting sequence for ${CONF_REF} has failed at step:
`tail -n 1 mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt`
Directory : ${TEST_DIR}

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

END_MAIL
      cat mesg_*_${CFG_USER}_${CFG_ARCH}.txt        >> trusting.mail
      mail -s "[trusting ${CONF_REF}] FAILED" $MAIL  < trusting.mail
  fi

fi
}

print_step() {
    STEP=$1
    export STEP
    printf "Step.....\n$1\n"
}

get_out() {
    mesg_make; mesg_publish

    # Save tested configuration if trusting failed
    if [ "$STATUS" == 'FAILED' ]; then
   touch mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt \
         mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt
   tar -czf ${REFE_DIR}/trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.tar.gz *
    fi

    printf "Status\n$STATUS\n"  > mesg_03_status_${CFG_USER}_${CFG_ARCH}.txt
    printf "Step.....\n$STEP\n" > mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt

    exit 1
}