1 | #!/bin/bash |
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2 | |
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3 | |
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4 | comments() { |
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5 | [ -e ocean.output ] && line=$( grep $1 ocean.output ) |
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6 | |
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7 | # Check environment architecture modification |
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8 | #--------------------------------------------------- |
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9 | [ $( diff -q env.log ${REFE_DIR}/env.log ) ] && line=$( diff env.log ${REFE_DIR}/env.log ) |
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10 | |
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11 | printf "Comments\n$line\n" | tee mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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12 | } |
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13 | |
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14 | get_cpu_time() { |
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15 | # Portability ! |
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16 | real_cpu_time=$( ${JOB_VIEW} ${JOB_ID} | awk 'END{print $9}' ) |
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17 | printf "Real CPU time\n${real_cpu_time}\n" | tee mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt |
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18 | } |
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19 | |
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20 | diff_inputs() { |
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21 | mesg='Same' |
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22 | |
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23 | for file in inputs_list.txt $( ls namelist_* ) $( ls *.xml ); do |
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24 | diff $file ${REFE_DIR}/$file |
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25 | [ $? -ne 0 ] && mesg='Different' |
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26 | done |
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27 | |
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28 | printf "Input files\n$mesg\n" | tee mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt |
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29 | } |
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30 | |
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31 | diff_restart() { |
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32 | last_time_step=$( cat ${REFE_DIR}/time.step | tr -d [:space:] ) |
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33 | echo 'Last time step of standard run: '${last_time_step} |
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34 | |
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35 | if [ $( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit ) ]; then |
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36 | base_name=$( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit \ |
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37 | | awk -F/ '{print $NF}' | sed "s/^\(.*\)$last_time_step\_.*/\1$last_time_step/" ) |
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38 | |
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39 | for comp in restart restart_ice restart_trc; do |
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40 | printf "${base_name}_${comp}.nc: " |
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41 | |
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42 | nb_dom=$( find ${TEST_DIR} -name "${base_name}_${comp}_[0-9]*.nc" | wc -l | awk '{print $1}' ) |
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43 | if [ ${nb_dom} -gt 1 ]; then |
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44 | ${NEMO_TRBD}/rebuild_nemo -t $NPROC ${base_name}_$comp ${nb_dom} > /dev/null |
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45 | fi |
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46 | |
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47 | cmp ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc |
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48 | if [ $? -ne 0 ]; then |
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49 | export STEP='Restart files different' |
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50 | printf "$CDO diffn\n" |
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51 | $CDO diffn ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc 2> /dev/null |
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52 | else |
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53 | printf "identical\n" |
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54 | fi |
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55 | |
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56 | \rm ${TEST_DIR}/${base_name}_${comp}_[0-9]*.nc |
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57 | done |
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58 | |
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59 | else |
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60 | printf "no restart files found for comparison\n" |
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61 | fi |
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62 | } |
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63 | |
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64 | get_soft_rel() { |
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65 | for rel in $CDO $COMPILER $MPI $NETCDF; do |
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66 | arch_rel=$( echo $LOADEDMODULES | sed "s#.*$rel/\([^:]*\).*#\1#" ) |
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67 | [ -z "${arch_rel}" ] && arch_rel=$( echo $PATH | sed "s#.*$rel/\([^/]*\).*#\1#" ) |
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68 | [ $rel == $COMPILER ] && arch_rel=$( $rel --version | grep -m1 -o ' [0-9.]* ' ) |
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69 | echo $rel ${arch_rel} >> env.log |
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70 | done |
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71 | |
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72 | sed -n 3p env.log | sed 'i\Compiler' > mesg_05_compiler_${CFG_USER}_${CFG_ARCH}.txt |
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73 | sed -n 4p env.log | sed 'i\MPI libs' > mesg_06_mpi_${CFG_USER}_${CFG_ARCH}.txt |
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74 | sed -n 5p env.log | sed 'i\NetCDF libs' > mesg_07_netcdf_${CFG_USER}_${CFG_ARCH}.txt |
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75 | } |
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76 | |
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77 | get_nemo_rev() { |
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78 | svn_opt='status' |
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79 | |
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80 | # If -v|--version option has been set, modify svn command |
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81 | if [[ $( echo ${NEMO_VERS} | grep "HEAD\|up\|update" ) \ |
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82 | || $( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) ]]; then |
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83 | rev=$( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) || rev='HEAD' |
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84 | svn_cmd='svn update -r '$rev |
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85 | else |
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86 | svn_cmd='svn '${svn_opt} |
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87 | fi |
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88 | |
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89 | rev=0 |
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90 | for dir in ${DIR_XIOS} ${NEMO_ARCH} ${NEMO_CONF} ${NEMO_ENGI} \ |
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91 | ${NEMO_EIOI} ${NEMO_EFCM} ${NEMO_TCMP} ${NEMO_TRBD} ; do |
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92 | |
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93 | # For time being, just get revision number from XIOS |
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94 | if [ $dir == ${DIR_XIOS} ]; then |
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95 | echo 'XIOS '$( svn info $dir | awk '(NR == 9) {print $NF}' ) >> env.log |
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96 | continue |
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97 | fi |
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98 | |
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99 | ${svn_cmd} $dir |
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100 | rev_loc=$( svn info $dir | awk '(NR == 5) {print $NF}' ) |
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101 | (( ${rev_loc} >= $rev )) && rev=${rev_loc} |
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102 | done |
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103 | |
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104 | printf "NEMOGCM rev.\n$rev\n" > mesg_02_nemogcm_${CFG_USER}_${CFG_ARCH}.txt |
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105 | } |
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106 | |
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107 | mesg_make() { |
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108 | paste -d ';' mesg_*_${CFG_USER}_${CFG_ARCH}.txt > trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt |
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109 | cat trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt |
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110 | } |
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111 | |
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112 | mesg_publish() { |
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113 | |
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114 | if [ $PUBLISH -eq 1 ]; then |
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115 | |
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116 | if [ -f ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt ]; then cmd='sed -n 2p'; else cmd='cat'; fi |
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117 | |
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118 | $cmd trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt >> ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt |
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119 | |
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120 | # Send mail only when FAILED |
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121 | if [[ ! -z $MAIL && "$STATUS"=='FAILED' ]]; then |
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122 | cat << END_MAIL > trusting.mail |
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123 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
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124 | Dear $USER, |
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125 | |
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126 | The trusting sequence for ${CONF_REF} has failed at step: |
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127 | `tail -n 1 mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt` |
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128 | Directory : ${TEST_DIR} |
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129 | |
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130 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
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131 | |
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132 | END_MAIL |
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133 | cat mesg_*_${CFG_USER}_${CFG_ARCH}.txt >> trusting.mail |
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134 | mail -s "[trusting ${CONF_REF}] FAILED" $MAIL < trusting.mail |
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135 | fi |
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136 | |
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137 | fi |
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138 | } |
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139 | |
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140 | print_step() { STEP=$1; export STEP && printf "Step.....\n$TEP\n"; } |
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141 | |
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142 | get_out() { |
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143 | mesg_make; mesg_publish |
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144 | |
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145 | # Save tested configuration if trusting failed |
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146 | if [ "$STATUS" == 'FAILED' ]; then |
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147 | touch mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt \ |
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148 | mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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149 | tar -czf ${REFE_DIR}/trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.tar.gz * |
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150 | fi |
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151 | |
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152 | printf "Status\n$STATUS\n" > mesg_03_status_${CFG_USER}_${CFG_ARCH}.txt |
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153 | printf "Step.....\n$STEP\n" > mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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154 | |
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155 | exit 1 |
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156 | } |
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