[3443] | 1 | MODULE p2zbio |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p2zbio *** |
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| 4 | !! TOP : LOBSTER |
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| 5 | !!====================================================================== |
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| 6 | !! History : - ! 1999-07 (M. Levy) Original code |
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| 7 | !! - ! 2000-12 (E. Kestenare) assign a parameter to name individual tracers |
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| 8 | !! - ! 2001-03 (M. Levy) LNO3 + dia2d |
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| 9 | !! 2.0 ! 2007-12 (C. Deltel, G. Madec) F90 |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | #if defined key_pisces_reduced |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | !! 'key_pisces_reduced' LOBSTER bio-model |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | !! p2z_bio : |
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| 16 | !!---------------------------------------------------------------------- |
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| 17 | USE oce_trc ! |
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| 18 | USE trc ! |
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| 19 | USE sms_pisces |
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| 20 | USE p2zopt |
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| 21 | USE lbclnk ! |
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| 22 | USE prtctl_trc ! Print control for debbuging |
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[4990] | 23 | USE trd_oce |
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| 24 | USE trdtrc |
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[3443] | 25 | USE iom |
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| 26 | |
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| 27 | IMPLICIT NONE |
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| 28 | PRIVATE |
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| 29 | |
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| 30 | PUBLIC p2z_bio ! called in ??? |
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| 31 | PUBLIC p2z_bio_init ! called in ??? |
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| 32 | |
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[4147] | 33 | REAL(wp) :: tmumax ! maximal phytoplankton growth rate [s-1] |
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| 34 | REAL(wp) :: rgamma ! phytoplankton exudation fraction [%] |
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| 35 | REAL(wp) :: fphylab ! NH4 fraction of phytoplankton exsudation |
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| 36 | REAL(wp) :: tmminp ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days] |
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| 37 | REAL(wp) :: aki ! light photosynthesis half saturation constant[W/m2] |
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[3443] | 38 | ! |
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[4147] | 39 | REAL(wp) :: akno3 ! nitrate limitation half-saturation value [mmol/m3] |
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| 40 | REAL(wp) :: aknh4 ! ammonium limitation half-saturation value [mmol/m3] |
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| 41 | REAL(wp) :: taunn ! nitrification rate [s-1] |
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| 42 | REAL(wp) :: psinut ! inhibition of nitrate uptake by ammonium |
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[3443] | 43 | ! |
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[4147] | 44 | REAL(wp) :: taudn ! detritus breakdown rate [0.1/86400 s-1=10 days] |
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| 45 | REAL(wp) :: fdetlab ! NH4 fraction of detritus dissolution |
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[3443] | 46 | ! |
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[4147] | 47 | REAL(wp) :: taudomn ! DOM breakdown rate [s-1] |
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| 48 | ! ! slow remineralization rate of semi-labile dom to nh4 (1 month) |
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[3443] | 49 | ! |
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[4147] | 50 | REAL(wp) :: rppz ! ivlev coeff for zoo mortality |
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| 51 | REAL(wp) :: taus ! specific zooplankton maximal grazing rate [s-1] |
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[3443] | 52 | ! ! 0.75/86400 s-1=8.680555E-6 1/86400 = 1.15e-5 |
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[4147] | 53 | REAL(wp) :: aks ! half-saturation constant for total zooplankton grazing [mmolN.m-3] |
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| 54 | REAL(wp) :: rpnaz ! non-assimilated phytoplankton by zooplancton [%] |
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| 55 | REAL(wp) :: rdnaz ! non-assimilated detritus by zooplankton [%] |
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| 56 | REAL(wp) :: tauzn ! zooplancton specific excretion rate [0.1/86400 s-1=10 days] |
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| 57 | REAL(wp) :: tmminz ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] |
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| 58 | REAL(wp) :: fzoolab ! NH4 fraction of zooplankton excretion |
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| 59 | REAL(wp) :: fdbod ! zooplankton mortality fraction that goes to detritus |
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[3443] | 60 | |
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| 61 | !!* Substitution |
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| 62 | # include "top_substitute.h90" |
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| 63 | !!---------------------------------------------------------------------- |
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| 64 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
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[5420] | 65 | !! $Id$ |
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[3443] | 66 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 67 | !!---------------------------------------------------------------------- |
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| 68 | |
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| 69 | CONTAINS |
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| 70 | |
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| 71 | SUBROUTINE p2z_bio( kt ) |
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| 72 | !!--------------------------------------------------------------------- |
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| 73 | !! *** ROUTINE p2z_bio *** |
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| 74 | !! |
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| 75 | !! ** Purpose : compute the now trend due to biogeochemical processes |
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| 76 | !! and add it to the general trend of passive tracers equations |
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| 77 | !! |
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| 78 | !! ** Method : each now biological flux is calculated in function of now |
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| 79 | !! concentrations of tracers. |
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| 80 | !! depending on the tracer, these fluxes are sources or sinks. |
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| 81 | !! the total of the sources and sinks for each tracer |
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| 82 | !! is added to the general trend. |
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| 83 | !! |
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| 84 | !! tra = tra + zf...tra - zftra... |
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| 85 | !! | | |
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| 86 | !! | | |
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| 87 | !! source sink |
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| 88 | !! |
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| 89 | !! IF 'key_diabio' defined , the biogeochemical trends |
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| 90 | !! for passive tracers are saved for futher diagnostics. |
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| 91 | !!--------------------------------------------------------------------- |
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| 92 | !! |
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| 93 | INTEGER, INTENT( in ) :: kt ! ocean time-step index |
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| 94 | !! |
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| 95 | INTEGER :: ji, jj, jk, jl |
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| 96 | REAL(wp) :: zdet, zzoo, zphy, zno3, znh4, zdom ! now concentrations |
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| 97 | REAL(wp) :: zlno3, zlnh4, zle, zlt ! limitation terms for phyto |
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| 98 | REAL(wp) :: zno3phy, znh4phy, zphynh4, zphydom |
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| 99 | REAL(wp) :: zphydet, zphyzoo, zdetzoo |
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| 100 | REAL(wp) :: zzoonh4, zzoodom, zzoodet, zdetnh4, zdetdom |
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| 101 | REAL(wp) :: znh4no3, zdomnh4, zppz, zpdz, zpppz, zppdz, zfood |
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| 102 | REAL(wp) :: zfilpz, zfildz, zphya, zzooa, zno3a |
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| 103 | REAL(wp) :: znh4a, zdeta, zdoma, zzoobod, zboddet, zdomaju |
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| 104 | REAL(wp) :: ze3t |
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| 105 | REAL(wp), POINTER, DIMENSION(:,:,:) :: zw2d |
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| 106 | REAL(wp), POINTER, DIMENSION(:,:,:,:) :: zw3d |
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| 107 | CHARACTER (len=25) :: charout |
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| 108 | !!--------------------------------------------------------------------- |
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| 109 | ! |
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| 110 | IF( nn_timing == 1 ) CALL timing_start('p2z_bio') |
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| 111 | ! |
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[4996] | 112 | IF( ln_diatrc .OR. lk_iomput ) THEN |
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[3443] | 113 | CALL wrk_alloc( jpi, jpj, 17, zw2d ) |
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| 114 | CALL wrk_alloc( jpi, jpj, jpk, 3, zw3d ) |
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| 115 | ENDIF |
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| 116 | |
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| 117 | IF( kt == nittrc000 ) THEN |
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| 118 | IF(lwp) WRITE(numout,*) |
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| 119 | IF(lwp) WRITE(numout,*) ' p2z_bio: LOBSTER bio-model' |
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| 120 | IF(lwp) WRITE(numout,*) ' ~~~~~~~' |
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| 121 | ENDIF |
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| 122 | |
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[3446] | 123 | xksi(:,:) = 0.e0 ! zooplakton closure ( fbod) |
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[4996] | 124 | IF( ln_diatrc .OR. lk_iomput ) THEN |
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[3443] | 125 | zw2d (:,:,:) = 0.e0 |
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| 126 | zw3d(:,:,:,:) = 0.e0 |
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| 127 | ENDIF |
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| 128 | |
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| 129 | ! ! -------------------------- ! |
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| 130 | DO jk = 1, jpkbm1 ! Upper ocean (bio-layers) ! |
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| 131 | ! ! -------------------------- ! |
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| 132 | DO jj = 2, jpjm1 |
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| 133 | DO ji = fs_2, fs_jpim1 |
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| 134 | ! trophic variables( det, zoo, phy, no3, nh4, dom) |
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| 135 | ! ------------------------------------------------ |
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| 136 | |
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| 137 | ! negative trophic variables DO not contribute to the fluxes |
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| 138 | zdet = MAX( 0.e0, trn(ji,jj,jk,jpdet) ) |
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| 139 | zzoo = MAX( 0.e0, trn(ji,jj,jk,jpzoo) ) |
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| 140 | zphy = MAX( 0.e0, trn(ji,jj,jk,jpphy) ) |
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| 141 | zno3 = MAX( 0.e0, trn(ji,jj,jk,jpno3) ) |
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| 142 | znh4 = MAX( 0.e0, trn(ji,jj,jk,jpnh4) ) |
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| 143 | zdom = MAX( 0.e0, trn(ji,jj,jk,jpdom) ) |
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| 144 | |
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| 145 | ! Limitations |
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| 146 | zlt = 1. |
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| 147 | zle = 1. - EXP( -etot(ji,jj,jk) / aki / zlt ) |
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| 148 | ! psinut,akno3,aknh4 added by asklod AS Kremeur 2005-03 |
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| 149 | zlno3 = zno3 * EXP( -psinut * znh4 ) / ( akno3 + zno3 ) |
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| 150 | zlnh4 = znh4 / (znh4+aknh4) |
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| 151 | |
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| 152 | ! sinks and sources |
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| 153 | ! phytoplankton production and exsudation |
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| 154 | zno3phy = tmumax * zle * zlt * zlno3 * zphy |
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| 155 | znh4phy = tmumax * zle * zlt * zlnh4 * zphy |
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| 156 | |
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| 157 | ! fphylab added by asklod AS Kremeur 2005-03 |
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| 158 | zphydom = rgamma * (1 - fphylab) * (zno3phy + znh4phy) |
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| 159 | zphynh4 = rgamma * fphylab * (zno3phy + znh4phy) |
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| 160 | ! zooplankton production |
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| 161 | ! preferences |
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| 162 | zppz = rppz |
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| 163 | zpdz = 1. - rppz |
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| 164 | zpppz = ( zppz * zphy ) / ( ( zppz * zphy + zpdz * zdet ) + 1.e-13 ) |
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| 165 | zppdz = ( zpdz * zdet ) / ( ( zppz * zphy + zpdz * zdet ) + 1.e-13 ) |
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| 166 | zfood = zpppz * zphy + zppdz * zdet |
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| 167 | ! filtration |
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| 168 | zfilpz = taus * zpppz / (aks + zfood) |
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| 169 | zfildz = taus * zppdz / (aks + zfood) |
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| 170 | ! grazing |
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| 171 | zphyzoo = zfilpz * zphy * zzoo |
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| 172 | zdetzoo = zfildz * zdet * zzoo |
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| 173 | |
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| 174 | ! fecal pellets production |
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| 175 | zzoodet = rpnaz * zphyzoo + rdnaz * zdetzoo |
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| 176 | |
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| 177 | ! zooplankton liquide excretion |
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| 178 | zzoonh4 = tauzn * fzoolab * zzoo |
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| 179 | zzoodom = tauzn * (1 - fzoolab) * zzoo |
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| 180 | |
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| 181 | ! mortality |
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| 182 | ! phytoplankton mortality |
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| 183 | zphydet = tmminp * zphy |
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| 184 | |
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| 185 | ! zooplankton mortality |
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| 186 | ! closure : flux grazing is redistributed below level jpkbio |
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| 187 | zzoobod = tmminz * zzoo * zzoo |
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[3446] | 188 | xksi(ji,jj) = xksi(ji,jj) + (1-fdbod) * zzoobod * fse3t(ji,jj,jk) |
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[3443] | 189 | zboddet = fdbod * zzoobod |
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| 190 | |
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| 191 | ! detritus and dom breakdown |
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| 192 | zdetnh4 = taudn * fdetlab * zdet |
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| 193 | zdetdom = taudn * (1 - fdetlab) * zdet |
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| 194 | |
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| 195 | zdomnh4 = taudomn * zdom |
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| 196 | |
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| 197 | ! flux added to express how the excess of nitrogen from |
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| 198 | ! PHY, ZOO and DET to DOM goes directly to NH4 (flux of ajustment) |
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| 199 | zdomaju = (1 - redf/reddom) * (zphydom + zzoodom + zdetdom) |
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| 200 | |
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| 201 | ! Nitrification |
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| 202 | znh4no3 = taunn * znh4 |
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| 203 | |
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| 204 | ! determination of trends |
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| 205 | ! total trend for each biological tracer |
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| 206 | zphya = zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet |
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| 207 | zzooa = zphyzoo + zdetzoo - zzoodet - zzoodom - zzoonh4 - zzoobod |
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| 208 | zno3a = - zno3phy + znh4no3 |
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| 209 | znh4a = - znh4phy - znh4no3 + zphynh4 + zzoonh4 + zdomnh4 + zdetnh4 + zdomaju |
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| 210 | zdeta = zphydet + zzoodet - zdetzoo - zdetnh4 - zdetdom + zboddet |
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| 211 | zdoma = zphydom + zzoodom + zdetdom - zdomnh4 - zdomaju |
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| 212 | |
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| 213 | ! tracer flux at totox-point added to the general trend |
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| 214 | tra(ji,jj,jk,jpdet) = tra(ji,jj,jk,jpdet) + zdeta |
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| 215 | tra(ji,jj,jk,jpzoo) = tra(ji,jj,jk,jpzoo) + zzooa |
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| 216 | tra(ji,jj,jk,jpphy) = tra(ji,jj,jk,jpphy) + zphya |
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| 217 | tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + zno3a |
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| 218 | tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + znh4a |
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| 219 | tra(ji,jj,jk,jpdom) = tra(ji,jj,jk,jpdom) + zdoma |
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| 220 | |
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| 221 | |
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| 222 | IF( ( ln_diabio .AND. .NOT. lk_iomput ) .OR. l_trdtrc ) THEN |
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| 223 | trbio(ji,jj,jk,jp_pcs0_trd ) = zno3phy |
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| 224 | trbio(ji,jj,jk,jp_pcs0_trd + 1) = znh4phy |
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| 225 | trbio(ji,jj,jk,jp_pcs0_trd + 2) = zphynh4 |
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| 226 | trbio(ji,jj,jk,jp_pcs0_trd + 3) = zphydom |
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| 227 | trbio(ji,jj,jk,jp_pcs0_trd + 4) = zphyzoo |
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| 228 | trbio(ji,jj,jk,jp_pcs0_trd + 5) = zphydet |
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| 229 | trbio(ji,jj,jk,jp_pcs0_trd + 6) = zdetzoo |
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| 230 | ! trend number 8 in p2zsed |
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| 231 | trbio(ji,jj,jk,jp_pcs0_trd + 8) = zzoodet |
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| 232 | trbio(ji,jj,jk,jp_pcs0_trd + 9) = zzoobod |
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| 233 | trbio(ji,jj,jk,jp_pcs0_trd + 10) = zzoonh4 |
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| 234 | trbio(ji,jj,jk,jp_pcs0_trd + 11) = zzoodom |
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| 235 | trbio(ji,jj,jk,jp_pcs0_trd + 12) = znh4no3 |
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| 236 | trbio(ji,jj,jk,jp_pcs0_trd + 13) = zdomnh4 |
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| 237 | trbio(ji,jj,jk,jp_pcs0_trd + 14) = zdetnh4 |
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| 238 | trbio(ji,jj,jk,jp_pcs0_trd + 15) = zdetdom |
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| 239 | ! trend number 17 in p2zexp |
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| 240 | ENDIF |
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[4996] | 241 | IF( ln_diatrc .OR. lk_iomput ) THEN |
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[3443] | 242 | ! convert fluxes in per day |
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| 243 | ze3t = fse3t(ji,jj,jk) * 86400. |
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| 244 | zw2d(ji,jj,1) = zw2d(ji,jj,1) + zno3phy * ze3t |
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| 245 | zw2d(ji,jj,2) = zw2d(ji,jj,2) + znh4phy * ze3t |
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| 246 | zw2d(ji,jj,3) = zw2d(ji,jj,3) + zphydom * ze3t |
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| 247 | zw2d(ji,jj,4) = zw2d(ji,jj,4) + zphynh4 * ze3t |
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| 248 | zw2d(ji,jj,5) = zw2d(ji,jj,5) + zphyzoo * ze3t |
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| 249 | zw2d(ji,jj,6) = zw2d(ji,jj,6) + zphydet * ze3t |
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| 250 | zw2d(ji,jj,7) = zw2d(ji,jj,7) + zdetzoo * ze3t |
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| 251 | zw2d(ji,jj,8) = zw2d(ji,jj,8) + zzoodet * ze3t |
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| 252 | zw2d(ji,jj,9) = zw2d(ji,jj,9) + zzoobod * ze3t |
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| 253 | zw2d(ji,jj,10) = zw2d(ji,jj,10) + zzoonh4 * ze3t |
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| 254 | zw2d(ji,jj,11) = zw2d(ji,jj,11) + zzoodom * ze3t |
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| 255 | zw2d(ji,jj,12) = zw2d(ji,jj,12) + znh4no3 * ze3t |
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| 256 | zw2d(ji,jj,13) = zw2d(ji,jj,13) + zdomnh4 * ze3t |
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| 257 | zw2d(ji,jj,14) = zw2d(ji,jj,14) + zdetnh4 * ze3t |
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| 258 | zw2d(ji,jj,15) = zw2d(ji,jj,15) + ( zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet ) * ze3t |
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| 259 | zw2d(ji,jj,16) = zw2d(ji,jj,16) + ( zphyzoo + zdetzoo - zzoodet - zzoobod - zzoonh4 - zzoodom ) * ze3t |
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| 260 | zw2d(ji,jj,17) = zw2d(ji,jj,17) + zdetdom * ze3t |
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| 261 | ! |
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| 262 | zw3d(ji,jj,jk,1) = zno3phy * 86400 |
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| 263 | zw3d(ji,jj,jk,2) = znh4phy * 86400 |
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| 264 | zw3d(ji,jj,jk,3) = znh4no3 * 86400 |
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| 265 | ! |
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| 266 | ENDIF |
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| 267 | END DO |
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| 268 | END DO |
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| 269 | END DO |
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| 270 | |
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| 271 | ! ! -------------------------- ! |
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| 272 | DO jk = jpkb, jpkm1 ! Upper ocean (bio-layers) ! |
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| 273 | ! ! -------------------------- ! |
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| 274 | DO jj = 2, jpjm1 |
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| 275 | DO ji = fs_2, fs_jpim1 |
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| 276 | ! remineralisation of all quantities towards nitrate |
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| 277 | |
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| 278 | ! trophic variables( det, zoo, phy, no3, nh4, dom) |
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| 279 | ! negative trophic variables DO not contribute to the fluxes |
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| 280 | zdet = MAX( 0.e0, trn(ji,jj,jk,jpdet) ) |
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| 281 | zzoo = MAX( 0.e0, trn(ji,jj,jk,jpzoo) ) |
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| 282 | zphy = MAX( 0.e0, trn(ji,jj,jk,jpphy) ) |
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| 283 | zno3 = MAX( 0.e0, trn(ji,jj,jk,jpno3) ) |
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| 284 | znh4 = MAX( 0.e0, trn(ji,jj,jk,jpnh4) ) |
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| 285 | zdom = MAX( 0.e0, trn(ji,jj,jk,jpdom) ) |
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| 286 | |
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| 287 | ! Limitations |
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| 288 | zlt = 0.e0 |
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| 289 | zle = 0.e0 |
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| 290 | zlno3 = 0.e0 |
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| 291 | zlnh4 = 0.e0 |
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| 292 | |
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| 293 | ! sinks and sources |
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| 294 | ! phytoplankton production and exsudation |
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| 295 | zno3phy = 0.e0 |
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| 296 | znh4phy = 0.e0 |
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| 297 | zphydom = 0.e0 |
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| 298 | zphynh4 = 0.e0 |
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| 299 | |
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| 300 | ! zooplankton production |
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| 301 | zphyzoo = 0.e0 ! grazing |
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| 302 | zdetzoo = 0.e0 |
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| 303 | |
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| 304 | zzoodet = 0.e0 ! fecal pellets production |
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| 305 | |
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| 306 | zzoonh4 = tauzn * fzoolab * zzoo ! zooplankton liquide excretion |
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| 307 | zzoodom = tauzn * (1 - fzoolab) * zzoo |
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| 308 | |
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| 309 | ! mortality |
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| 310 | zphydet = tmminp * zphy ! phytoplankton mortality |
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| 311 | |
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| 312 | zzoobod = 0.e0 ! zooplankton mortality |
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| 313 | zboddet = 0.e0 ! closure : flux fbod is redistributed below level jpkbio |
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| 314 | |
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| 315 | ! detritus and dom breakdown |
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| 316 | zdetnh4 = taudn * fdetlab * zdet |
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| 317 | zdetdom = taudn * (1 - fdetlab) * zdet |
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| 318 | |
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| 319 | zdomnh4 = taudomn * zdom |
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| 320 | zdomaju = (1 - redf/reddom) * (zphydom + zzoodom + zdetdom) |
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| 321 | |
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| 322 | ! Nitrification |
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| 323 | znh4no3 = taunn * znh4 |
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| 324 | |
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| 325 | |
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| 326 | ! determination of trends |
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| 327 | ! total trend for each biological tracer |
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| 328 | zphya = zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet |
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| 329 | zzooa = zphyzoo + zdetzoo - zzoodet - zzoodom - zzoonh4 - zzoobod |
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| 330 | zno3a = - zno3phy + znh4no3 |
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| 331 | znh4a = - znh4phy - znh4no3 + zphynh4 + zzoonh4 + zdomnh4 + zdetnh4 + zdomaju |
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| 332 | zdeta = zphydet + zzoodet - zdetzoo - zdetnh4 - zdetdom + zboddet |
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| 333 | zdoma = zphydom + zzoodom + zdetdom - zdomnh4 - zdomaju |
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| 334 | |
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| 335 | ! tracer flux at totox-point added to the general trend |
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| 336 | tra(ji,jj,jk,jpdet) = tra(ji,jj,jk,jpdet) + zdeta |
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| 337 | tra(ji,jj,jk,jpzoo) = tra(ji,jj,jk,jpzoo) + zzooa |
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| 338 | tra(ji,jj,jk,jpphy) = tra(ji,jj,jk,jpphy) + zphya |
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| 339 | tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + zno3a |
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| 340 | tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + znh4a |
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| 341 | tra(ji,jj,jk,jpdom) = tra(ji,jj,jk,jpdom) + zdoma |
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| 342 | ! |
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| 343 | IF( ( ln_diabio .AND. .NOT. lk_iomput ) .OR. l_trdtrc ) THEN |
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| 344 | trbio(ji,jj,jk,jp_pcs0_trd ) = zno3phy |
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| 345 | trbio(ji,jj,jk,jp_pcs0_trd + 1) = znh4phy |
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| 346 | trbio(ji,jj,jk,jp_pcs0_trd + 2) = zphynh4 |
---|
| 347 | trbio(ji,jj,jk,jp_pcs0_trd + 3) = zphydom |
---|
| 348 | trbio(ji,jj,jk,jp_pcs0_trd + 4) = zphyzoo |
---|
| 349 | trbio(ji,jj,jk,jp_pcs0_trd + 5) = zphydet |
---|
| 350 | trbio(ji,jj,jk,jp_pcs0_trd + 6) = zdetzoo |
---|
| 351 | ! trend number 8 in p2zsed |
---|
| 352 | trbio(ji,jj,jk,jp_pcs0_trd + 8) = zzoodet |
---|
| 353 | trbio(ji,jj,jk,jp_pcs0_trd + 9) = zzoobod |
---|
| 354 | trbio(ji,jj,jk,jp_pcs0_trd + 10) = zzoonh4 |
---|
| 355 | trbio(ji,jj,jk,jp_pcs0_trd + 11) = zzoodom |
---|
| 356 | trbio(ji,jj,jk,jp_pcs0_trd + 12) = znh4no3 |
---|
| 357 | trbio(ji,jj,jk,jp_pcs0_trd + 13) = zdomnh4 |
---|
| 358 | trbio(ji,jj,jk,jp_pcs0_trd + 14) = zdetnh4 |
---|
| 359 | trbio(ji,jj,jk,jp_pcs0_trd + 15) = zdetdom |
---|
| 360 | ! trend number 17 in p2zexp |
---|
| 361 | ENDIF |
---|
[4996] | 362 | IF( ln_diatrc .OR. lk_iomput ) THEN |
---|
[3443] | 363 | ! convert fluxes in per day |
---|
| 364 | ze3t = fse3t(ji,jj,jk) * 86400. |
---|
| 365 | zw2d(ji,jj,1) = zw2d(ji,jj,1) + zno3phy * ze3t |
---|
| 366 | zw2d(ji,jj,2) = zw2d(ji,jj,2) + znh4phy * ze3t |
---|
| 367 | zw2d(ji,jj,3) = zw2d(ji,jj,3) + zphydom * ze3t |
---|
| 368 | zw2d(ji,jj,4) = zw2d(ji,jj,4) + zphynh4 * ze3t |
---|
| 369 | zw2d(ji,jj,5) = zw2d(ji,jj,5) + zphyzoo * ze3t |
---|
| 370 | zw2d(ji,jj,6) = zw2d(ji,jj,6) + zphydet * ze3t |
---|
| 371 | zw2d(ji,jj,7) = zw2d(ji,jj,7) + zdetzoo * ze3t |
---|
| 372 | zw2d(ji,jj,8) = zw2d(ji,jj,8) + zzoodet * ze3t |
---|
| 373 | zw2d(ji,jj,9) = zw2d(ji,jj,9) + zzoobod * ze3t |
---|
| 374 | zw2d(ji,jj,10) = zw2d(ji,jj,10) + zzoonh4 * ze3t |
---|
| 375 | zw2d(ji,jj,11) = zw2d(ji,jj,11) + zzoodom * ze3t |
---|
| 376 | zw2d(ji,jj,12) = zw2d(ji,jj,12) + znh4no3 * ze3t |
---|
| 377 | zw2d(ji,jj,13) = zw2d(ji,jj,13) + zdomnh4 * ze3t |
---|
| 378 | zw2d(ji,jj,14) = zw2d(ji,jj,14) + zdetnh4 * ze3t |
---|
| 379 | zw2d(ji,jj,15) = zw2d(ji,jj,15) + ( zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet ) * ze3t |
---|
| 380 | zw2d(ji,jj,16) = zw2d(ji,jj,16) + ( zphyzoo + zdetzoo - zzoodet - zzoobod - zzoonh4 - zzoodom ) * ze3t |
---|
| 381 | zw2d(ji,jj,17) = zw2d(ji,jj,17) + zdetdom * ze3t |
---|
| 382 | ! |
---|
| 383 | zw3d(ji,jj,jk,1) = zno3phy * 86400 |
---|
| 384 | zw3d(ji,jj,jk,2) = znh4phy * 86400 |
---|
| 385 | zw3d(ji,jj,jk,3) = znh4no3 * 86400 |
---|
| 386 | ! |
---|
| 387 | ENDIF |
---|
| 388 | END DO |
---|
| 389 | END DO |
---|
| 390 | END DO |
---|
| 391 | |
---|
[4996] | 392 | IF( ln_diatrc .OR. lk_iomput ) THEN |
---|
[3443] | 393 | DO jl = 1, 17 |
---|
| 394 | CALL lbc_lnk( zw2d(:,:,jl),'T', 1. ) |
---|
| 395 | END DO |
---|
| 396 | DO jl = 1, 3 |
---|
| 397 | CALL lbc_lnk( zw3d(:,:,:,jl),'T', 1. ) |
---|
| 398 | END DO |
---|
[4996] | 399 | ENDIF |
---|
| 400 | IF( lk_iomput ) THEN |
---|
[3443] | 401 | ! Save diagnostics |
---|
[4996] | 402 | CALL iom_put( "TNO3PHY", zw2d(:,:,1) ) |
---|
| 403 | CALL iom_put( "TNH4PHY", zw2d(:,:,2) ) |
---|
| 404 | CALL iom_put( "TPHYDOM", zw2d(:,:,3) ) |
---|
| 405 | CALL iom_put( "TPHYNH4", zw2d(:,:,4) ) |
---|
| 406 | CALL iom_put( "TPHYZOO", zw2d(:,:,5) ) |
---|
| 407 | CALL iom_put( "TPHYDET", zw2d(:,:,6) ) |
---|
| 408 | CALL iom_put( "TDETZOO", zw2d(:,:,7) ) |
---|
| 409 | CALL iom_put( "TZOODET", zw2d(:,:,8) ) |
---|
| 410 | CALL iom_put( "TZOOBOD", zw2d(:,:,9) ) |
---|
| 411 | CALL iom_put( "TZOONH4", zw2d(:,:,10) ) |
---|
| 412 | CALL iom_put( "TZOODOM", zw2d(:,:,11) ) |
---|
| 413 | CALL iom_put( "TNH4NO3", zw2d(:,:,12) ) |
---|
| 414 | CALL iom_put( "TDOMNH4", zw2d(:,:,13) ) |
---|
| 415 | CALL iom_put( "TDETNH4", zw2d(:,:,14) ) |
---|
| 416 | CALL iom_put( "TPHYTOT", zw2d(:,:,15) ) |
---|
| 417 | CALL iom_put( "TZOOTOT", zw2d(:,:,16) ) |
---|
| 418 | ! |
---|
| 419 | CALL iom_put( "FNO3PHY", zw3d(:,:,:,1) ) |
---|
| 420 | CALL iom_put( "FNH4PHY", zw3d(:,:,:,2) ) |
---|
| 421 | CALL iom_put( "FNH4NO3", zw3d(:,:,:,3) ) |
---|
| 422 | ! |
---|
| 423 | ELSE |
---|
| 424 | IF( ln_diatrc ) THEN |
---|
[3443] | 425 | ! |
---|
| 426 | trc2d(:,:,jp_pcs0_2d ) = zw2d(:,:,1) |
---|
| 427 | trc2d(:,:,jp_pcs0_2d + 1) = zw2d(:,:,2) |
---|
| 428 | trc2d(:,:,jp_pcs0_2d + 2) = zw2d(:,:,3) |
---|
| 429 | trc2d(:,:,jp_pcs0_2d + 3) = zw2d(:,:,4) |
---|
| 430 | trc2d(:,:,jp_pcs0_2d + 4) = zw2d(:,:,5) |
---|
| 431 | trc2d(:,:,jp_pcs0_2d + 5) = zw2d(:,:,6) |
---|
| 432 | trc2d(:,:,jp_pcs0_2d + 6) = zw2d(:,:,7) |
---|
| 433 | ! trend number 8 is in p2zsed.F |
---|
| 434 | trc2d(:,:,jp_pcs0_2d + 8) = zw2d(:,:,8) |
---|
| 435 | trc2d(:,:,jp_pcs0_2d + 9) = zw2d(:,:,9) |
---|
| 436 | trc2d(:,:,jp_pcs0_2d + 10) = zw2d(:,:,10) |
---|
| 437 | trc2d(:,:,jp_pcs0_2d + 11) = zw2d(:,:,11) |
---|
| 438 | trc2d(:,:,jp_pcs0_2d + 12) = zw2d(:,:,12) |
---|
| 439 | trc2d(:,:,jp_pcs0_2d + 13) = zw2d(:,:,13) |
---|
| 440 | trc2d(:,:,jp_pcs0_2d + 14) = zw2d(:,:,14) |
---|
| 441 | trc2d(:,:,jp_pcs0_2d + 15) = zw2d(:,:,15) |
---|
| 442 | trc2d(:,:,jp_pcs0_2d + 16) = zw2d(:,:,16) |
---|
| 443 | trc2d(:,:,jp_pcs0_2d + 17) = zw2d(:,:,17) |
---|
| 444 | ! trend number 19 is in p2zexp.F |
---|
| 445 | trc3d(:,:,:,jp_pcs0_3d ) = zw3d(:,:,:,1) |
---|
| 446 | trc3d(:,:,:,jp_pcs0_3d + 1) = zw3d(:,:,:,2) |
---|
| 447 | trc3d(:,:,:,jp_pcs0_3d + 2) = zw3d(:,:,:,3) |
---|
| 448 | ENDIF |
---|
| 449 | ! |
---|
| 450 | ENDIF |
---|
| 451 | |
---|
| 452 | IF( ln_diabio .AND. .NOT. lk_iomput ) THEN |
---|
| 453 | DO jl = jp_pcs0_trd, jp_pcs1_trd |
---|
| 454 | CALL lbc_lnk( trbio(:,:,1,jl),'T', 1. ) |
---|
| 455 | END DO |
---|
| 456 | ENDIF |
---|
| 457 | ! |
---|
| 458 | IF( l_trdtrc ) THEN |
---|
| 459 | DO jl = jp_pcs0_trd, jp_pcs1_trd |
---|
[4990] | 460 | CALL trd_trc( trbio(:,:,:,jl), jl, kt ) ! handle the trend |
---|
[3443] | 461 | END DO |
---|
| 462 | ENDIF |
---|
| 463 | |
---|
| 464 | IF(ln_ctl) THEN ! print mean trends (used for debugging) |
---|
| 465 | WRITE(charout, FMT="('bio')") |
---|
| 466 | CALL prt_ctl_trc_info(charout) |
---|
| 467 | CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) |
---|
| 468 | ENDIF |
---|
| 469 | ! |
---|
[4996] | 470 | IF( ln_diatrc .OR. lk_iomput ) THEN |
---|
[3443] | 471 | CALL wrk_dealloc( jpi, jpj, 17, zw2d ) |
---|
| 472 | CALL wrk_dealloc( jpi, jpj, jpk, 3, zw3d ) |
---|
| 473 | ENDIF |
---|
| 474 | ! |
---|
| 475 | IF( nn_timing == 1 ) CALL timing_stop('p2z_bio') |
---|
| 476 | ! |
---|
| 477 | END SUBROUTINE p2z_bio |
---|
| 478 | |
---|
| 479 | SUBROUTINE p2z_bio_init |
---|
| 480 | !!---------------------------------------------------------------------- |
---|
| 481 | !! *** ROUTINE p2z_bio_init *** |
---|
| 482 | !! |
---|
[4147] | 483 | !! ** Purpose : biological parameters |
---|
[3443] | 484 | !! |
---|
| 485 | !! ** Method : Read namelist and check the parameters |
---|
| 486 | !! |
---|
| 487 | !!---------------------------------------------------------------------- |
---|
| 488 | NAMELIST/namlobphy/ tmumax, rgamma, fphylab, tmminp, aki |
---|
| 489 | NAMELIST/namlobnut/ akno3, aknh4, taunn, psinut |
---|
| 490 | NAMELIST/namlobzoo/ rppz, taus, aks, rpnaz, rdnaz, tauzn, fzoolab, fdbod, tmminz |
---|
| 491 | NAMELIST/namlobdet/ taudn, fdetlab |
---|
| 492 | NAMELIST/namlobdom/ taudomn |
---|
[4147] | 493 | INTEGER :: ios ! Local integer output status for namelist read |
---|
[3443] | 494 | !!---------------------------------------------------------------------- |
---|
| 495 | |
---|
[4147] | 496 | REWIND( numnatp_ref ) ! Namelist namlobphy in reference namelist : Lobster biological parameters |
---|
| 497 | READ ( numnatp_ref, namlobphy, IOSTAT = ios, ERR = 901) |
---|
| 498 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobphy in reference namelist', lwp ) |
---|
[3443] | 499 | |
---|
[4147] | 500 | REWIND( numnatp_cfg ) ! Namelist namlobphy in configuration namelist : Lobster biological parameters |
---|
| 501 | READ ( numnatp_cfg, namlobphy, IOSTAT = ios, ERR = 902 ) |
---|
| 502 | 902 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobphy in configuration namelist', lwp ) |
---|
[4624] | 503 | IF(lwm) WRITE ( numonp, namlobphy ) |
---|
[4147] | 504 | |
---|
[3443] | 505 | IF(lwp) THEN |
---|
| 506 | WRITE(numout,*) ' Namelist namlobphy' |
---|
| 507 | WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' |
---|
| 508 | WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma |
---|
| 509 | WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab |
---|
| 510 | WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp |
---|
| 511 | WRITE(numout,*) ' light hlaf saturation constant aki =', aki |
---|
| 512 | WRITE(numout,*) ' ' |
---|
| 513 | ENDIF |
---|
| 514 | |
---|
[4147] | 515 | REWIND( numnatp_ref ) ! Namelist namlobnut in reference namelist : Lobster nutriments parameters |
---|
| 516 | READ ( numnatp_ref, namlobnut, IOSTAT = ios, ERR = 903) |
---|
| 517 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobnut in reference namelist', lwp ) |
---|
| 518 | |
---|
| 519 | REWIND( numnatp_cfg ) ! Namelist namlobnut in configuration namelist : Lobster nutriments parameters |
---|
| 520 | READ ( numnatp_cfg, namlobnut, IOSTAT = ios, ERR = 904 ) |
---|
| 521 | 904 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobnut in configuration namelist', lwp ) |
---|
[4624] | 522 | IF(lwm) WRITE ( numonp, namlobnut ) |
---|
[4147] | 523 | |
---|
[3443] | 524 | IF(lwp) THEN |
---|
| 525 | WRITE(numout,*) ' Namelist namlobnut' |
---|
| 526 | WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 |
---|
| 527 | WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 |
---|
| 528 | WRITE(numout,*) ' nitrification rate taunn =', taunn |
---|
| 529 | WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut |
---|
| 530 | WRITE(numout,*) ' ' |
---|
| 531 | ENDIF |
---|
| 532 | |
---|
[4147] | 533 | REWIND( numnatp_ref ) ! Namelist namlobzoo in reference namelist : Lobster zooplankton parameters |
---|
| 534 | READ ( numnatp_ref, namlobzoo, IOSTAT = ios, ERR = 905) |
---|
| 535 | 905 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobzoo in reference namelist', lwp ) |
---|
[3443] | 536 | |
---|
[4147] | 537 | REWIND( numnatp_cfg ) ! Namelist namlobzoo in configuration namelist : Lobster zooplankton parameters |
---|
| 538 | READ ( numnatp_cfg, namlobzoo, IOSTAT = ios, ERR = 906 ) |
---|
| 539 | 906 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobzoo in configuration namelist', lwp ) |
---|
[4624] | 540 | IF(lwm) WRITE ( numonp, namlobzoo ) |
---|
[4147] | 541 | |
---|
[3443] | 542 | IF(lwp) THEN |
---|
| 543 | WRITE(numout,*) ' Namelist namlobzoo' |
---|
| 544 | WRITE(numout,*) ' zoo preference for phyto rppz =', rppz |
---|
| 545 | WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' |
---|
| 546 | WRITE(numout,*) ' half saturation constant for zoo food aks =', aks |
---|
| 547 | WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz |
---|
| 548 | WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz |
---|
| 549 | WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn |
---|
| 550 | WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz |
---|
| 551 | WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab |
---|
| 552 | WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod |
---|
| 553 | WRITE(numout,*) ' ' |
---|
| 554 | ENDIF |
---|
| 555 | |
---|
[4147] | 556 | REWIND( numnatp_ref ) ! Namelist namlobdet in reference namelist : Lobster detritus parameters |
---|
| 557 | READ ( numnatp_ref, namlobdet, IOSTAT = ios, ERR = 907) |
---|
| 558 | 907 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobdet in reference namelist', lwp ) |
---|
[3443] | 559 | |
---|
[4147] | 560 | REWIND( numnatp_cfg ) ! Namelist namlobdet in configuration namelist : Lobster detritus parameters |
---|
| 561 | READ ( numnatp_cfg, namlobdet, IOSTAT = ios, ERR = 908 ) |
---|
| 562 | 908 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobdet in configuration namelist', lwp ) |
---|
[4624] | 563 | IF(lwm) WRITE ( numonp, namlobdet ) |
---|
[4147] | 564 | |
---|
[3443] | 565 | IF(lwp) THEN |
---|
| 566 | WRITE(numout,*) ' Namelist namlobdet' |
---|
| 567 | WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' |
---|
| 568 | WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab |
---|
| 569 | WRITE(numout,*) ' ' |
---|
| 570 | ENDIF |
---|
| 571 | |
---|
[4147] | 572 | REWIND( numnatp_ref ) ! Namelist namlobdom in reference namelist : Lobster DOM breakdown rate |
---|
| 573 | READ ( numnatp_ref, namlobdom, IOSTAT = ios, ERR = 909) |
---|
| 574 | 909 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobdom in reference namelist', lwp ) |
---|
[3443] | 575 | |
---|
[4147] | 576 | REWIND( numnatp_cfg ) ! Namelist namlobdom in configuration namelist : Lobster DOM breakdown rate |
---|
| 577 | READ ( numnatp_cfg, namlobdom, IOSTAT = ios, ERR = 910 ) |
---|
| 578 | 910 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namlobdom in configuration namelist', lwp ) |
---|
[4624] | 579 | IF(lwm) WRITE ( numonp, namlobdom ) |
---|
[4147] | 580 | |
---|
[3443] | 581 | IF(lwp) THEN |
---|
| 582 | WRITE(numout,*) ' Namelist namlobdom' |
---|
| 583 | WRITE(numout,*) ' DOM breakdown rate taudomn =', 86400 * taudn , ' d' |
---|
| 584 | WRITE(numout,*) ' ' |
---|
| 585 | ENDIF |
---|
| 586 | ! |
---|
| 587 | END SUBROUTINE p2z_bio_init |
---|
| 588 | |
---|
| 589 | #else |
---|
| 590 | !!====================================================================== |
---|
| 591 | !! Dummy module : No PISCES bio-model |
---|
| 592 | !!====================================================================== |
---|
| 593 | CONTAINS |
---|
| 594 | SUBROUTINE p2z_bio( kt ) ! Empty routine |
---|
| 595 | INTEGER, INTENT( in ) :: kt |
---|
| 596 | WRITE(*,*) 'p2z_bio: You should not have seen this print! error?', kt |
---|
| 597 | END SUBROUTINE p2z_bio |
---|
| 598 | #endif |
---|
| 599 | |
---|
| 600 | !!====================================================================== |
---|
| 601 | END MODULE p2zbio |
---|