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namelist_lobster in trunk/CONFIG/GYRE_LOBSTER/EXP00 – NEMO

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source: trunk/CONFIG/GYRE_LOBSTER/EXP00/namelist_lobster @ 1121

Last change on this file since 1121 was 1121, checked in by cetlod, 16 years ago
change the style of all top namelist to be consistent with the forthcoming style of OPA namelist, see ticket:196
File size: 8.2 KB

Line
1	!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
2	!! LOBSTER : 1 - biological parameters for phytoplankton (namlobphy)
3	!! namelists 2 - biological parameters for nutrients (namlobnut)
4	!! 3 - biological parameters for zooplankton (namlobzoo)
5	!! 4 - biological parameters for detritus (namlobdet)
6	!! 5 - biological parameters for DOM (namlobdom)
7	!! 6 - parameters from aphotic layers to sediment (namlobsed)
8	!! 7 - general coefficients (namlobrat)
9	!! 8 - optical parameters (namlobopt)
10	!! 9 - additional 2D/3D diagnostics (namlobdia)
11	!! 10 - biological diagnostics trends (namlobdbi)
12	!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
13	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
14	&namlobphy ! biological parameters for phytoplankton
15	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
16	apmin = 0. ! fixed phytoplancton concentration [mmol/m3]
17	tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1]
18	rgamma = 0.05 ! phytoplankton exudation fraction [%]
19	fphylab = 0.75 ! NH4 fraction of phytoplankton exsudation
20	tmmaxp = 0.0 ! maximal phytoplancton mortality rate [s-1]
21	tmminp = 5.8e-7 ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days]
22	rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1]
23	aki = 33. ! light photosynthesis half saturation constant[W/m2]
24	toptp = 0. ! optimal photosynthesis temperature
25	/
26	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
27	&namlobnut ! biological parameters for nutrients
28	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
29	anmin = 0. ! minimum nutrients concentration [mmol/m3]
30	akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3]
31	aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3]
32	taunn = 5.80e-7 ! nitrification rate [s-1]
33	psinut = 3. ! inhibition of nitrate uptake by ammonium
34	/
35	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
36	&namlobzoo ! biological parameters for zooplankton
37	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
38	azmin = 0. ! minimum zooplancton concentration [mmol/m3]
39	eggzoo = 0.0 ! minimum for zooplankton concentration, egg effect [mmolN.m-3]
40	rgz = 0. ! ivlev coeff for zoo mortality
41	rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%]
42	taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1]
43	! ! 0.75/86400 s-1=8.680555E-6 1/86400 = 1.15e-5
44	aks = 1. ! half-saturation constant for total zooplankton grazing [mmolN.m-3]
45	rpnaz = 0.3 ! non-assimilated phytoplankton by zooplancton [%]
46	rdnaz = 0.3 ! non-assimilated detritus by zooplankton [%]
47	tauzn = 8.1e-7 ! zooplancton specific excretion rate [0.1/86400 s-1=10 days]
48	fzoolab = 0.5 ! NH4 fraction of zooplankton excretion
49	fdbod = 0.5 ! zooplankton mortality fraction that goes to detritus
50	tmmaxz = 0. ! maximal zooplankton mortality rate
51	tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1]
52	/
53	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
54	&namlobdet ! biological parameters for detritus
55	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
56	admin = 0. ! minimum detritus concentration [mmol/m3]
57	taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days]
58	fdetlab = 0. ! NH4 fraction of detritus dissolution
59	vsed = 3.47e-5 ! detritus sedimentation speed [m/s]
60	/
61	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
62	&namlobdom ! biological parameters for DOM
63	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
64	taudomn = 6.43e-8 ! DOM breakdown rate [s-1]
65	! ! slow remineralization rate of semi-labile dom to nh4 (1 month)
66	/
67	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
68	&namlobsed ! parameters from aphotic layers to sediment
69	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
70	sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1]
71	sedlostpoc = 0. ! mass of POC lost in sediments
72	/
73	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
74	&namlobrat ! general coefficients
75	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
76	redf = 6.56 ! redfield ratio (C:N) for phyto
77	reddom = 6.56 ! redfield ratio (C:N) for DOM
78	slopet = 0. ! van t Hoff "coefficient"
79	tmaxr = 0. ! maximal damping coeff under euphotic layer
80	tminr = 5.80e-7 ! minimal damping coeff under euphotic layer
81	xhr = -0.858 ! coeff for martin''s remineralisation profile
82	filmax = 0. ! ????
83	toptgz = 0. ! ????
84	tmaxgz = 0. ! ????
85	anumin = 0. ! ????
86	afdmin = 0. ! ????
87	/
88	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
89	&namlobopt ! optical parameters
90	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
91	xkg0 = 0.0232 ! green absorption coefficient of water
92	xkr0 = 0.225 ! red absorption coefficent of water
93	xkgp = 0.074 ! green absorption coefficient of chl
94	xkrp = 0.037 ! red absorption coefficient of chl
95	xlg = 0.674 ! green chl exposant for absorption
96	xlr = 0.629 ! red chl exposant for absorption
97	rpig = 0.7 ! chla/chla+pheo ratio
98	/
99	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
100	&namlobdia ! additional 2D/3D tracers diagnostics ("key_trc_diaadd")
101	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
102	nwritedia = 360 ! time step frequency for tracers diagnostics
103	!
104	! ! name ! title of ! units !
105	! ! ! the field ! !
106	lobdia2d(1) = 'TNO3PHY' , 'TNO3PHY', '-'
107	lobdia2d(2) = 'TNH4PHY' , 'TNH4PHY', '-'
108	lobdia2d(3) = 'TPHYDOM' , 'TPHYDOM', '-'
109	lobdia2d(4) = 'TPHYNH4' , 'TPHYNH4', '-'
110	lobdia2d(5) = 'TPHYZOO' , 'TPHYZOO', '-'
111	lobdia2d(6) = 'TPHYDET' , 'TPHYDET', '-'
112	lobdia2d(7) = 'TDETZOO' , 'TDETZOO', '-'
113	lobdia2d(8) = 'TDETSED' , 'TDETSED', '-'
114	lobdia2d(9) = 'TZOODET' , 'TZOODET', '-'
115	lobdia2d(10) = 'TZOOBOD' , 'TZOOBOD', '-'
116	lobdia2d(11) = 'TZOONH4' , 'TZOONH4', '-'
117	lobdia2d(12) = 'TZOODOM' , 'TZOODOM', '-'
118	lobdia2d(13) = 'TNH4NO3' , 'TNH4NO3', '-'
119	lobdia2d(14) = 'TDOMNH4' , 'TDOMNH4', '-'
120	lobdia2d(15) = 'TDETNH4' , 'TDETNH4', '-'
121	lobdia2d(16) = 'TPHYTOT' , 'TPHYTOT', '-'
122	lobdia2d(17) = 'TZOOTOT' , 'TZOOTOT', '-'
123	lobdia2d(18) = 'TDETDOM' , 'TDETDOM', '-'
124	lobdia2d(19) = 'SEDPOC ' , 'SEDPOC ', '-'
125	lobdia3d(1) = 'FNO3PHY' , 'FNO3PHY', '-'
126	lobdia3d(2) = 'FNH4PHY' , 'FNH4PHY', '-'
127	lobdia3d(3) = 'FNH4NO3' , 'FNH4NO3', '-'
128	/
129	!'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
130	&namlobdbi ! biological diagnostics trends "key_trc_diabio"
131	!,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
132	nwritebio = 360 ! time step frequency for biological outputs
133	!
134	! ! name ! title of the field ! units !
135	lobdiabio(1) = 'TNO3PHY' , 'New primary production ', 'mmole/m3/s'
136	lobdiabio(2) = 'TNH4PHY' , 'Regenerated primary production', 'mmole/m3/s'
137	lobdiabio(3) = 'TPHYDOM' , 'Grazing ', 'mmole/m3/s'
138	/

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