[1121] | 1 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
---|
| 2 | !! LOBSTER : 1 - biological parameters for phytoplankton (namlobphy) |
---|
| 3 | !! namelists 2 - biological parameters for nutrients (namlobnut) |
---|
| 4 | !! 3 - biological parameters for zooplankton (namlobzoo) |
---|
| 5 | !! 4 - biological parameters for detritus (namlobdet) |
---|
| 6 | !! 5 - biological parameters for DOM (namlobdom) |
---|
| 7 | !! 6 - parameters from aphotic layers to sediment (namlobsed) |
---|
| 8 | !! 7 - general coefficients (namlobrat) |
---|
| 9 | !! 8 - optical parameters (namlobopt) |
---|
| 10 | !! 9 - additional 2D/3D diagnostics (namlobdia) |
---|
| 11 | !! 10 - biological diagnostics trends (namlobdbi) |
---|
| 12 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
---|
| 13 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 14 | &namlobphy ! biological parameters for phytoplankton |
---|
| 15 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 16 | apmin = 0. ! fixed phytoplancton concentration [mmol/m3] |
---|
| 17 | tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1] |
---|
| 18 | rgamma = 0.05 ! phytoplankton exudation fraction [%] |
---|
| 19 | fphylab = 0.75 ! NH4 fraction of phytoplankton exsudation |
---|
| 20 | tmmaxp = 0.0 ! maximal phytoplancton mortality rate [s-1] |
---|
| 21 | tmminp = 5.8e-7 ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days] |
---|
| 22 | rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1] |
---|
| 23 | aki = 33. ! light photosynthesis half saturation constant[W/m2] |
---|
| 24 | toptp = 0. ! optimal photosynthesis temperature |
---|
| 25 | / |
---|
| 26 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 27 | &namlobnut ! biological parameters for nutrients |
---|
| 28 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 29 | anmin = 0. ! minimum nutrients concentration [mmol/m3] |
---|
| 30 | akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3] |
---|
| 31 | aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3] |
---|
| 32 | taunn = 5.80e-7 ! nitrification rate [s-1] |
---|
| 33 | psinut = 3. ! inhibition of nitrate uptake by ammonium |
---|
| 34 | / |
---|
| 35 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 36 | &namlobzoo ! biological parameters for zooplankton |
---|
| 37 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 38 | azmin = 0. ! minimum zooplancton concentration [mmol/m3] |
---|
| 39 | eggzoo = 0.0 ! minimum for zooplankton concentration, egg effect [mmolN.m-3] |
---|
| 40 | rgz = 0. ! ivlev coeff for zoo mortality |
---|
| 41 | rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%] |
---|
| 42 | taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1] |
---|
| 43 | ! ! 0.75/86400 s-1=8.680555E-6 1/86400 = 1.15e-5 |
---|
| 44 | aks = 1. ! half-saturation constant for total zooplankton grazing [mmolN.m-3] |
---|
| 45 | rpnaz = 0.3 ! non-assimilated phytoplankton by zooplancton [%] |
---|
| 46 | rdnaz = 0.3 ! non-assimilated detritus by zooplankton [%] |
---|
| 47 | tauzn = 8.1e-7 ! zooplancton specific excretion rate [0.1/86400 s-1=10 days] |
---|
| 48 | fzoolab = 0.5 ! NH4 fraction of zooplankton excretion |
---|
| 49 | fdbod = 0.5 ! zooplankton mortality fraction that goes to detritus |
---|
| 50 | tmmaxz = 0. ! maximal zooplankton mortality rate |
---|
| 51 | tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] |
---|
| 52 | / |
---|
| 53 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 54 | &namlobdet ! biological parameters for detritus |
---|
| 55 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 56 | admin = 0. ! minimum detritus concentration [mmol/m3] |
---|
| 57 | taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days] |
---|
| 58 | fdetlab = 0. ! NH4 fraction of detritus dissolution |
---|
| 59 | vsed = 3.47e-5 ! detritus sedimentation speed [m/s] |
---|
| 60 | / |
---|
| 61 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 62 | &namlobdom ! biological parameters for DOM |
---|
| 63 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 64 | taudomn = 6.43e-8 ! DOM breakdown rate [s-1] |
---|
| 65 | ! ! slow remineralization rate of semi-labile dom to nh4 (1 month) |
---|
| 66 | / |
---|
| 67 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 68 | &namlobsed ! parameters from aphotic layers to sediment |
---|
| 69 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 70 | sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] |
---|
| 71 | sedlostpoc = 0. ! mass of POC lost in sediments |
---|
| 72 | / |
---|
| 73 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 74 | &namlobrat ! general coefficients |
---|
| 75 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 76 | redf = 6.56 ! redfield ratio (C:N) for phyto |
---|
| 77 | reddom = 6.56 ! redfield ratio (C:N) for DOM |
---|
| 78 | slopet = 0. ! van t Hoff "coefficient" |
---|
| 79 | tmaxr = 0. ! maximal damping coeff under euphotic layer |
---|
| 80 | tminr = 5.80e-7 ! minimal damping coeff under euphotic layer |
---|
| 81 | xhr = -0.858 ! coeff for martin''s remineralisation profile |
---|
| 82 | filmax = 0. ! ???? |
---|
| 83 | toptgz = 0. ! ???? |
---|
| 84 | tmaxgz = 0. ! ???? |
---|
| 85 | anumin = 0. ! ???? |
---|
| 86 | afdmin = 0. ! ???? |
---|
| 87 | / |
---|
| 88 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 89 | &namlobopt ! optical parameters |
---|
| 90 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
| 91 | xkg0 = 0.0232 ! green absorption coefficient of water |
---|
| 92 | xkr0 = 0.225 ! red absorption coefficent of water |
---|
| 93 | xkgp = 0.074 ! green absorption coefficient of chl |
---|
| 94 | xkrp = 0.037 ! red absorption coefficient of chl |
---|
| 95 | xlg = 0.674 ! green chl exposant for absorption |
---|
| 96 | xlr = 0.629 ! red chl exposant for absorption |
---|
| 97 | rpig = 0.7 ! chla/chla+pheo ratio |
---|
| 98 | / |
---|
| 99 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
| 100 | &namlobdia ! additional 2D/3D tracers diagnostics ("key_trc_diaadd") |
---|
| 101 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
[2567] | 102 | nn_writedia = 360 ! time step frequency for tracers diagnostics |
---|
[796] | 103 | ! |
---|
[1121] | 104 | ! ! name ! title of ! units ! |
---|
| 105 | ! ! ! the field ! ! |
---|
| 106 | lobdia2d(1) = 'TNO3PHY' , 'TNO3PHY', '-' |
---|
| 107 | lobdia2d(2) = 'TNH4PHY' , 'TNH4PHY', '-' |
---|
| 108 | lobdia2d(3) = 'TPHYDOM' , 'TPHYDOM', '-' |
---|
| 109 | lobdia2d(4) = 'TPHYNH4' , 'TPHYNH4', '-' |
---|
| 110 | lobdia2d(5) = 'TPHYZOO' , 'TPHYZOO', '-' |
---|
| 111 | lobdia2d(6) = 'TPHYDET' , 'TPHYDET', '-' |
---|
| 112 | lobdia2d(7) = 'TDETZOO' , 'TDETZOO', '-' |
---|
| 113 | lobdia2d(8) = 'TDETSED' , 'TDETSED', '-' |
---|
| 114 | lobdia2d(9) = 'TZOODET' , 'TZOODET', '-' |
---|
| 115 | lobdia2d(10) = 'TZOOBOD' , 'TZOOBOD', '-' |
---|
| 116 | lobdia2d(11) = 'TZOONH4' , 'TZOONH4', '-' |
---|
| 117 | lobdia2d(12) = 'TZOODOM' , 'TZOODOM', '-' |
---|
| 118 | lobdia2d(13) = 'TNH4NO3' , 'TNH4NO3', '-' |
---|
| 119 | lobdia2d(14) = 'TDOMNH4' , 'TDOMNH4', '-' |
---|
| 120 | lobdia2d(15) = 'TDETNH4' , 'TDETNH4', '-' |
---|
| 121 | lobdia2d(16) = 'TPHYTOT' , 'TPHYTOT', '-' |
---|
| 122 | lobdia2d(17) = 'TZOOTOT' , 'TZOOTOT', '-' |
---|
| 123 | lobdia2d(18) = 'TDETDOM' , 'TDETDOM', '-' |
---|
| 124 | lobdia2d(19) = 'SEDPOC ' , 'SEDPOC ', '-' |
---|
| 125 | lobdia3d(1) = 'FNO3PHY' , 'FNO3PHY', '-' |
---|
| 126 | lobdia3d(2) = 'FNH4PHY' , 'FNH4PHY', '-' |
---|
| 127 | lobdia3d(3) = 'FNH4NO3' , 'FNH4NO3', '-' |
---|
[796] | 128 | / |
---|
[1121] | 129 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
---|
[1293] | 130 | &namlobdbi ! biological diagnostics trends |
---|
[1121] | 131 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
---|
[1293] | 132 | ! ! 3D bio diagnostics units : mmole/m3/s ("key_trc_diabio") |
---|
| 133 | ! ! 2D bio diagnostics units : mmole/m2/s ("key_trdmld_trc") |
---|
| 134 | |
---|
| 135 | nwritebio = 4320 ! time step frequency for biological outputs |
---|
[796] | 136 | ! |
---|
[1293] | 137 | ! ! name ! title of the field ! units ! |
---|
| 138 | lobdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s' |
---|
| 139 | lobdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s' |
---|
| 140 | lobdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s' |
---|
| 141 | lobdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s' |
---|
| 142 | lobdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s' |
---|
| 143 | lobdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s' |
---|
| 144 | lobdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s' |
---|
| 145 | lobdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s' |
---|
| 146 | lobdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s' |
---|
| 147 | lobdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s' |
---|
| 148 | lobdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s' |
---|
| 149 | lobdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s' |
---|
| 150 | lobdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s' |
---|
| 151 | lobdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s' |
---|
| 152 | lobdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s' |
---|
| 153 | lobdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s' |
---|
| 154 | lobdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s' |
---|
[796] | 155 | / |
---|