[2562] | 1 | ##################################################### |
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[2354] | 2 | # Author : Simona Flavoni for NEMO |
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| 3 | # Contact : sflod@locean-ipsl.upmc.fr |
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| 4 | # |
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[2359] | 5 | # Some scripts called by sette.sh |
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| 6 | # fcm_job.sh : simple job to run NEMO with fcm |
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[2354] | 7 | ###################################################### |
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| 8 | #set -x |
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| 9 | set -o posix |
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| 10 | #set -u |
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| 11 | #set -e |
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| 12 | #+ |
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| 13 | # |
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| 14 | # ================ |
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| 15 | # fcm_job.sh |
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| 16 | # ================ |
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| 17 | # |
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| 18 | # -------------------------- |
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| 19 | # Simple job for NEMO tests |
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| 20 | # -------------------------- |
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| 21 | # |
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| 22 | # SYNOPSIS |
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| 23 | # ======== |
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| 24 | # |
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| 25 | # :: |
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| 26 | # |
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[2657] | 27 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME |
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[2354] | 28 | # |
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| 29 | # |
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| 30 | # DESCRIPTION |
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| 31 | # =========== |
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| 32 | # |
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| 33 | # |
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| 34 | # Simple job for SET TESTS for NEMO (SETTE) |
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| 35 | # |
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[2675] | 36 | # this job creates tree of validation in NEMO_VALIDATION_DIR as follows : |
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[2354] | 37 | # |
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[2665] | 38 | # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE) |
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| 39 | # |
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| 40 | # NEMO_VALIDATION_DIR : is choosen in param.cfg |
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| 41 | # |
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| 42 | # WCONFIG_NAME : set by makenemo at the moment of compilation |
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| 43 | # |
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| 44 | # WCOMPILER_NAME : set by makenemo at the moment of compilation |
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| 45 | # |
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| 46 | # TEST_NAME : convention is LONG=10 days run, SHORT=5 days run |
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| 47 | # |
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| 48 | # REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken |
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| 49 | # |
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[2354] | 50 | # EXAMPLES |
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| 51 | # ======== |
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| 52 | # |
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| 53 | # :: |
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| 54 | # |
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[2665] | 55 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC TEST_NAME |
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[2354] | 56 | # |
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[2665] | 57 | # run a job of config GYRE with 1 processor test REPRODUCTINILITY |
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| 58 | # $ ./fcm_job.sh input_GYRE.cfg 1 SHORT |
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[2354] | 59 | # |
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[2665] | 60 | # run a job of config ORCA2_LIM_PISCES with 8 processors test RESTARTABILITY |
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| 61 | # $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 LONG |
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[2507] | 62 | # |
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| 63 | # |
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[2354] | 64 | # TODO |
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| 65 | # ==== |
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| 66 | # |
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| 67 | # option debug |
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| 68 | # |
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| 69 | # |
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| 70 | # EVOLUTIONS |
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| 71 | # ========== |
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| 72 | # |
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[2507] | 73 | # $Id$ |
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[2354] | 74 | # |
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| 75 | # |
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| 76 | # |
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| 77 | # * creation |
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| 78 | # |
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| 79 | #- |
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| 80 | # |
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[2545] | 81 | |
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[2656] | 82 | usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg NUMBER_OF_PROCS TEST_NAME" |
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| 83 | usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 RUN" |
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[2545] | 84 | |
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| 85 | |
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[2656] | 86 | minargcount=3 |
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[2545] | 87 | if [ ${#} -lt ${minargcount} ] |
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| 88 | then |
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| 89 | echo "not enought arguments for fcm_job.sh script" |
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| 90 | echo "control number of argument of fcm_job.sh in sette.sh" |
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| 91 | echo "${usage}" |
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| 92 | exit 1 |
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| 93 | fi |
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| 94 | unset minargcount |
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[2656] | 95 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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[2545] | 96 | touch ${SETTE_DIR}/output.sette |
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| 97 | fi |
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[2562] | 98 | |
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| 99 | echo "date: `date`" >> ${SETTE_DIR}/output.sette |
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| 100 | echo "" >> ${SETTE_DIR}/output.sette |
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| 101 | echo "running config: ${NEW_CONF}" >> ${SETTE_DIR}/output.sette |
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| 102 | echo "" >> ${SETTE_DIR}/output.sette |
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| 103 | echo "list of cpp_keys: " >> ${SETTE_DIR}/output.sette |
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| 104 | echo "`more ../CONFIG/${NEW_CONF}/cpp_${NEW_CONF}.fcm`" >> ${SETTE_DIR}/output.sette |
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| 105 | echo "" >> ${SETTE_DIR}/output.sette |
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[2685] | 106 | echo "compiling with: ${CMP_NAM}" >> ${SETTE_DIR}/output.sette |
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| 107 | echo "" >> ${SETTE_DIR}/output.sette |
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[2656] | 108 | echo "executing script : \"fcm_job $@\" " >> ${SETTE_DIR}/output.sette |
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[2562] | 109 | echo " " >> ${SETTE_DIR}/output.sette |
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[2545] | 110 | |
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[2562] | 111 | ################################################################ |
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[2354] | 112 | # SET INPUT |
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[2507] | 113 | # get the input tarfile if needed |
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[2354] | 114 | tar_file=$(sed -ne "1,1p" $1) |
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| 115 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
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[2545] | 116 | echo "looking for tar file" >> ${SETTE_DIR}/output.sette |
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| 117 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 118 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
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[2656] | 119 | if [ ! -f ${INPUT_DIR}/${tar_file} ] ; then |
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| 120 | echo "PROBLEM during copy of tar file" >> ${SETTE_DIR}/output.sette |
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| 121 | echo "tar file IS NOT present in ${INPUT_DIR} directory " >> ${SETTE_DIR}/output.sette |
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| 122 | echo " " >> ${SETTE_DIR}/output.sette |
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| 123 | echo "PROBLEM during copy of tar file" |
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| 124 | exit 1 |
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| 125 | else |
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| 126 | cd ${INPUT_DIR} ; tar xvof ${INPUT_DIR}/*.tar ; gunzip -f *gz |
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| 127 | fi |
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[2354] | 128 | fi |
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| 129 | |
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| 130 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
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[2545] | 131 | echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette |
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| 132 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 133 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
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| 134 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
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| 135 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
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| 136 | fi |
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| 137 | |
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| 138 | |
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| 139 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
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| 140 | #- Namelist for ocean and ice (agrif fine grid) |
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[2545] | 141 | echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette |
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| 142 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 143 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
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| 144 | fi |
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| 145 | ################################################################ |
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| 146 | |
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| 147 | ################################################################ |
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| 148 | # RUN OPA |
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| 149 | cd ${INPUT_DIR} |
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| 150 | NB_PROC=$2 |
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[2549] | 151 | if [ ! -r ${INPUT_DIR}/opa ] |
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| 152 | then |
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| 153 | echo "executable opa does not exist" |
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[2656] | 154 | echo "executable opa does not exist, exit" >> ${SETTE_DIR}/output.sette |
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[2549] | 155 | exit 1 |
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[2546] | 156 | fi |
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| 157 | if [ ${NB_PROC} == 1 ] ; then |
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[2549] | 158 | echo "running opa" >> ${SETTE_DIR}/output.sette |
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| 159 | echo " " >> ${SETTE_DIR}/output.sette |
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| 160 | ./opa |
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[2354] | 161 | else |
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[2549] | 162 | echo "running opa in MPI" >> ${SETTE_DIR}/output.sette |
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| 163 | echo " " >> ${SETTE_DIR}/output.sette |
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[2494] | 164 | # example for brodie (NEC SX8) machine |
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[2549] | 165 | # mpirun -np ${NB_PROC} opa |
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[2354] | 166 | # example for dedale machine |
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| 167 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
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[2494] | 168 | # example for vargas (IBM Power6) machine |
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[2549] | 169 | mpiexec -n ${NB_PROC} opa |
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[2354] | 170 | fi |
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| 171 | ################################################################ |
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[2562] | 172 | # SMALL DEBUG |
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| 173 | # echo "control that time.step exists |
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| 174 | if [ ! -r ${INPUT_DIR}/time.step ] |
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| 175 | then |
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| 176 | echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette |
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| 177 | echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette |
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| 178 | exit 1 |
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| 179 | else |
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| 180 | echo "file time.step exists" >> ${SETTE_DIR}/output.sette |
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| 181 | echo "ok model run" >> ${SETTE_DIR}/output.sette |
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| 182 | fi |
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| 183 | ################################################################ |
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[2354] | 184 | |
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| 185 | ################################################################ |
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[2562] | 186 | # SAVE OUTPUT, DEBUG & RESTART FILES |
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| 187 | echo "saving ocean & ice output, debug & restart files" >> ${SETTE_DIR}/output.sette |
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[2545] | 188 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 189 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
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| 190 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
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| 191 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
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| 192 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
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[2656] | 193 | [ -n "$(ls *_ptrc_*)" ] && mv *_ptrc_*.nc ${OUTPUT_DIR}/. |
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| 194 | [ -n "$(ls *_diad_*)" ] && mv *_diad_*.nc ${OUTPUT_DIR}/. |
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| 195 | [ -n "`ls *restart*`" ] && cp *restart*.nc ${OUTPUT_DIR}/. |
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[2354] | 196 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
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[2656] | 197 | [ -n "`ls *icemod*`" ] && mv *icemod* ${OUTPUT_DIR}/. |
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[2354] | 198 | #- Save ftrace file |
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| 199 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
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| 200 | ################################################################ |
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| 201 | |
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[2656] | 202 | ################################################################ |
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| 203 | # SAVE IN NEMO_VALIDATION tree |
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| 204 | export LANG=en_US |
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| 205 | cd ${CONFIG_DIR} |
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| 206 | cd ../ |
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| 207 | REVISION_NB=`svn info | grep -i "Revision:" | sed -e "s/ //" | cut -d ":" -f 2` |
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| 208 | if [ ${#REVISION_NB} -eq 0 ] |
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| 209 | then |
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| 210 | echo "some problems with svn info command" |
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| 211 | echo "some problems with svn info command" >> ${SETTE_DIR}/output.sette |
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[2686] | 212 | REVISION_NB=`date +%Y%m%d` |
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[2656] | 213 | echo "put in ${REVISION_NB} date" |
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| 214 | echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette |
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| 215 | else |
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| 216 | echo "value of revision number of NEMOGCM: ${REVISION_NB}" |
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| 217 | fi |
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| 218 | cd ${NEMO_VALIDATION_DIR} |
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| 219 | export TEST_NAME=$3 |
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| 220 | `mkdir -p ${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME}` |
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| 221 | NEMO_VALID=${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME} |
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| 222 | if [ -d ${NEMO_VALID} ] ; then |
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| 223 | echo "created ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 224 | else |
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| 225 | echo "problems in creating ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 226 | echo "EXIT," |
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| 227 | exit 1 |
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| 228 | fi |
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| 229 | [ -f ${OUTPUT_DIR}/*ocean.output ] && mv ${OUTPUT_DIR}/*ocean.output ${NEMO_VALID}/. |
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| 230 | [ -f ${OUTPUT_DIR}/*solver.stat ] && mv ${OUTPUT_DIR}/*solver.stat ${NEMO_VALID}/. |
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| 231 | [ -n "`ls ${OUTPUT_DIR}/*restart*`" ] && mv ${OUTPUT_DIR}/*restart* ${NEMO_VALID}/. |
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[2687] | 232 | [ -f ${OUTPUT_DIR}/ice_evolu ] && mv ${OUTPUT_DIR}/ice_evolu ${NEMO_VALID}/. |
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[2656] | 233 | if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then |
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| 234 | echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 235 | echo "moved solver.stat in ${NEMO_VALID} directory" |
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| 236 | else |
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| 237 | echo "problem in looking for solver.stat file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 238 | echo "solver.stat IS NOT in ${NEMO_VALID} directory" |
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| 239 | fi |
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| 240 | if [ -n "$(ls ${NEMO_VALID}/*ocean.output*)" ] ; then |
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| 241 | echo "moved ocean.output in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 242 | echo "moved ocean.output in ${NEMO_VALID} directory" |
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| 243 | else |
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| 244 | echo "problem in looking for ocean.output file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 245 | echo "ocean.output IS NOT in ${NEMO_VALID} directory" |
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| 246 | fi |
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| 247 | if [ -n "`ls ${NEMO_VALID}/*restart*`" ] ; then |
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| 248 | echo "moved restart files in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 249 | echo "moved restart files in ${NEMO_VALID} directory" |
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| 250 | else |
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| 251 | echo "problem in looking for restart files in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 252 | echo "restart files ARE NOT in ${NEMO_VALID} directory" |
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| 253 | fi |
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[2687] | 254 | if [ -n "$(ls ${NEMO_VALID}/ice_evolu)" ] ; then |
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| 255 | echo "moved ice_evolu in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 256 | echo "moved ice_evolu in ${NEMO_VALID} directory" |
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| 257 | else |
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| 258 | echo "problem looking for ice_evolu file in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette |
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| 259 | echo "ice_evolu IS NOT in ${NEMO_VALID} directory" |
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| 260 | fi |
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[2656] | 261 | ################################################################ |
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