source: trunk/NEMOGCM/SETTE/fcm_job.sh @ 2545

Last change on this file since 2545 was 2545, checked in by flavoni, 10 years ago

improved READE and SETTE.pdf for SETTE, add small debug, see ticket #752

  • Property svn:executable set to *
File size: 4.7 KB
Line 
1######################################################
2# Author : Simona Flavoni for NEMO
3# Contact : sflod@locean-ipsl.upmc.fr
4#
5# Some scripts called by sette.sh
6# fcm_job.sh   : simple job to run NEMO with fcm
7######################################################
8#set -x
9set -o posix
10#set -u
11#set -e
12#+
13#
14# ================
15# fcm_job.sh
16# ================
17#
18# --------------------------
19# Simple job for NEMO tests
20# --------------------------
21#
22# SYNOPSIS
23# ========
24#
25# ::
26#
27#  $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC
28#
29#
30# DESCRIPTION
31# ===========
32#
33#
34# Simple job for SET TESTS for NEMO (SETTE)
35#
36#
37# EXAMPLES
38# ========
39#
40# ::
41#
42#  $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME       NUMBER_PROC
43#
44#  run a job of config GYRE with 1 processor
45#  $ ./fcm_job.sh input_GYRE.cfg                     1
46#
47#  run a job of config ORCA2_LIM_PISCES with 8 processors
48#  $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg         8
49#
50#
51# TODO
52# ====
53#
54# option debug
55#
56#
57# EVOLUTIONS
58# ==========
59#
60# $Id$
61#
62#
63#
64#   * creation
65#
66#-
67#
68
69usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg  NUMBER_OF_PROCS"
70usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8"
71
72
73minargcount=2
74        if [ ${#} -lt ${minargcount} ]
75        then
76                echo "not enought arguments for fcm_job.sh script"
77                echo "control number of argument of fcm_job.sh in sette.sh"
78                echo "${usage}"
79        exit 1
80        fi
81        unset minargcount
82   if [  -f ${SETTE_DIR}/output.sette ] ; then
83           echo "file output already present. Append comments"
84           echo "`ls ${SETTE_DIR}/output.sette`"
85   else
86           echo "file output not present"
87           touch ${SETTE_DIR}/output.sette
88           echo "`ls ${SETTE_DIR}/output.sette`"
89   fi
90   echo "executing script : fcm_job $@" >> ${SETTE_DIR}/output.sette
91   echo "            " >> ${SETTE_DIR}/output.sette
92
93# SET INPUT
94# get the input tarfile if needed
95tar_file=$(sed -ne "1,1p" $1)
96if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then
97   echo "looking for tar file" >> ${SETTE_DIR}/output.sette
98   echo "            " >> ${SETTE_DIR}/output.sette
99   cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/.
100   cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz
101fi
102
103if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then
104   echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette
105   echo "            " >> ${SETTE_DIR}/output.sette
106   cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice
107elif  [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then
108   cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice
109fi
110
111
112if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then
113   #- Namelist for ocean and ice (agrif fine grid)
114      echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette
115      echo "            " >> ${SETTE_DIR}/output.sette
116   cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice
117fi
118################################################################
119
120################################################################
121# RUN OPA
122cd ${INPUT_DIR}
123NB_PROC=$2
124 if [ ${NB_PROC} == 1 ] ; then
125 opa_command='./opa'  # !! to test if executable is created
126          type ${opa_command}
127          status_type=${?}
128          if [ ${status_type} -ne 0 ]
129          then
130              echo "opa not found"
131              exit 1
132          fi
133   echo "running opa" >> ${SETTE_DIR}/output.sette
134   echo "            " >> ${SETTE_DIR}/output.sette
135   ./opa
136else
137opa_command='mpirun'  # !! to test if executable is created
138          type ${opa_command}
139          status_type=${?}
140          if [ ${status_type} -ne 0 ]
141          then
142              echo "mpi opa not found"
143              exit 1
144          fi
145# example for brodie (NEC SX8) machine
146   echo "running opa in MPI" >> ${SETTE_DIR}/output.sette
147   echo "            " >> ${SETTE_DIR}/output.sette
148   mpirun -np ${NB_PROC} opa
149# example for dedale machine
150#  mpirun --mca btl self,tcp -np ${NB_PROC} opa
151# example for vargas (IBM Power6) machine
152#  mpiexec -n ${NB_PROC} opa
153fi
154################################################################
155
156################################################################
157## -- Save output files
158
159#- Save ocean output files
160echo "saving ocean & ice output, debug & restarts files" >> ${SETTE_DIR}/output.sette
161echo "            " >> ${SETTE_DIR}/output.sette
162[ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR}
163[ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/.
164[ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/.
165[ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/.
166[ -f restart* ] && cp restart* ${OUTPUT_DIR}/.
167[ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/.
168[ -n "$(ls *icemod*)" ] && mv *icemod* ${OUTPUT_DIR}/.
169#- Save ftrace file
170[ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/.
171################################################################
172
Note: See TracBrowser for help on using the repository browser.