[1154] | 1 | # $Id$ |
---|
[695] | 2 | set -xv |
---|
| 3 | |
---|
| 4 | CONF=GYRE |
---|
| 5 | # Variables changed by lance_batch.ksh script |
---|
| 6 | RUN=xxx |
---|
| 7 | NB_PROCS=xxx |
---|
| 8 | LAUNCH=xxx |
---|
| 9 | LEXE=xxx |
---|
| 10 | CPERF=xxx |
---|
| 11 | D_INPUT=xxx |
---|
| 12 | D_GET=xxx |
---|
| 13 | REF_TAG=xxx |
---|
| 14 | TSYMB=xxx |
---|
| 15 | |
---|
| 16 | # Variables changed by ins_valid.ksh script |
---|
| 17 | MAINDIR=/Users/ctlod/WORK/AZE |
---|
| 18 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
---|
| 19 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
---|
| 20 | |
---|
| 21 | # Arguments |
---|
| 22 | # type = 'long' or '1_short' or '2_short' |
---|
| 23 | type=$1 |
---|
| 24 | |
---|
| 25 | case ${type} in |
---|
| 26 | 'long' ) |
---|
| 27 | DIROUT='LONG' |
---|
| 28 | ITERATIONS=360 ;; |
---|
| 29 | |
---|
| 30 | '1_short' ) |
---|
| 31 | DIROUT='1_SHORT' |
---|
| 32 | ITERATIONS=180 ;; |
---|
| 33 | |
---|
| 34 | '2_short' ) |
---|
| 35 | DIROUT='2_SHORT' |
---|
| 36 | ITERATIONS=180 ;; |
---|
| 37 | |
---|
| 38 | 'gtime' ) |
---|
| 39 | DIROUT='GTIME' |
---|
| 40 | ITERATIONS=4320 ;; |
---|
| 41 | esac |
---|
| 42 | |
---|
| 43 | # Working directory |
---|
| 44 | cd ${TMPDIR} |
---|
| 45 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN |
---|
| 46 | #-T- osxxlf zback=$? |
---|
| 47 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
---|
| 48 | |
---|
| 49 | ############################################################## |
---|
| 50 | ############################################################## |
---|
| 51 | ############################################################## |
---|
| 52 | ### Input files |
---|
| 53 | ############################################################## |
---|
| 54 | ############################################################## |
---|
| 55 | ############################################################## |
---|
| 56 | # Ocean namelist |
---|
[1115] | 57 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist . |
---|
[695] | 58 | |
---|
[1144] | 59 | # Local function to find namelists parameters |
---|
| 60 | supergrep () { |
---|
| 61 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
---|
| 62 | } |
---|
| 63 | |
---|
[695] | 64 | # namelist modifications |
---|
[1144] | 65 | PAT_NIT000=$( supergrep nit000 namelist ) |
---|
| 66 | PAT_NITEND=$( supergrep nitend namelist ) |
---|
| 67 | PAT_NSTOCK=$( supergrep nstock namelist ) |
---|
| 68 | PAT_NWRITE=$( supergrep nwrite namelist ) |
---|
| 69 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
---|
| 70 | PAT_NBITCM=$( supergrep nbit_cmp namelist ) |
---|
| 71 | PAT_NSOLVV=$( supergrep nsolv namelist ) |
---|
| 72 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
---|
| 73 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
---|
[695] | 74 | |
---|
[1144] | 75 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
---|
| 76 | -e "s%$PAT_NIT000% nit000 = 1 %" \ |
---|
| 77 | -e "s%$PAT_NITEND% nitend = ${ITERATIONS} %" \ |
---|
| 78 | -e "s%$PAT_NSTOCK% nstock = ${ITERATIONS} %" \ |
---|
[1150] | 79 | -e "s%$PAT_NWRITE% nwrite = 60 %" \ |
---|
[1144] | 80 | -e "s%$PAT_NRSTDT% nrstdt = 0 %" \ |
---|
| 81 | -e "s%$PAT_NBITCM% nbit_cmp = 1%" \ |
---|
| 82 | -e "s%$PAT_NSOLVV% nsolv = 2%" \ |
---|
| 83 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" namelist > nam.tmp |
---|
[695] | 84 | |
---|
| 85 | mv nam.tmp namelist |
---|
| 86 | |
---|
| 87 | # Analytical forcing |
---|
| 88 | |
---|
| 89 | # Get restarts files if needed |
---|
| 90 | if [ $type = '2_short' ] |
---|
| 91 | then |
---|
| 92 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
---|
| 93 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc |
---|
| 94 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
---|
| 95 | fi |
---|
| 96 | |
---|
| 97 | if [ ${RUN} = 'mpi' ] ; then |
---|
| 98 | typeset -Z4 i=0 |
---|
| 99 | while [ $i -lt $NB_PROCS ] |
---|
| 100 | do |
---|
| 101 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc |
---|
| 102 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
---|
| 103 | let i=$i+1 |
---|
| 104 | done |
---|
| 105 | fi |
---|
| 106 | |
---|
[1144] | 107 | # Ocean namelist modifications |
---|
| 108 | PAT_NIT000=$( supergrep nit000 namelist ) |
---|
| 109 | PAT_NITEND=$( supergrep nitend namelist ) |
---|
| 110 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
---|
| 111 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
---|
| 112 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
---|
[695] | 113 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
---|
| 114 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
---|
| 115 | |
---|
[1144] | 116 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
---|
| 117 | -e "s%$PAT_NIT000% nit000 = $ORCA_NIT000 %" \ |
---|
| 118 | -e "s%$PAT_NITEND% nitend = $ORCA_NITEND %" \ |
---|
| 119 | -e "s%$PAT_NRSTDT% nrstdt = 2%" \ |
---|
| 120 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" namelist > nam.tmp |
---|
[695] | 121 | |
---|
| 122 | mv nam.tmp namelist |
---|
| 123 | |
---|
| 124 | fi |
---|
| 125 | |
---|
| 126 | ############################################################## |
---|
| 127 | ############################################################## |
---|
| 128 | ############################################################## |
---|
| 129 | ### Launch run |
---|
| 130 | ############################################################## |
---|
| 131 | ############################################################## |
---|
| 132 | ############################################################## |
---|
| 133 | |
---|
| 134 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
---|
| 135 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
---|
| 136 | chmod 777 opa_${CONF}_${RUN} |
---|
| 137 | chmod 777 opa_${CONF}_memo |
---|
| 138 | |
---|
| 139 | # |
---|
| 140 | # Profiling & Executable memory size |
---|
| 141 | #################################### |
---|
| 142 | touch memory_size.txt |
---|
| 143 | |
---|
| 144 | case ${RUN} in |
---|
| 145 | 'mon' ) |
---|
| 146 | #-T- sx8brodie export F_PROGINF=detail |
---|
| 147 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
---|
| 148 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
---|
[1297] | 149 | #-T- aix6 ;; |
---|
| 150 | #-T- ax6_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
---|
| 151 | #-T- ax6_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
---|
[695] | 152 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
---|
| 153 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
---|
| 154 | 'mpi' ) |
---|
| 155 | #-T- sx8brodie export MPIPROGINF=detail ;; |
---|
[1297] | 156 | #-T- aix6 ;; |
---|
| 157 | #-T- ax6_mono ;; |
---|
| 158 | #-T- osxxlf ;; |
---|
[695] | 159 | 'omp' ) |
---|
| 160 | #-T- sx8brodie export F_PROGINF=detail |
---|
| 161 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
---|
[1297] | 162 | #-T- aix6 ;; |
---|
| 163 | #-T- ax6_mono ;; |
---|
| 164 | #-T- osxxlf ;; |
---|
[695] | 165 | esac |
---|
| 166 | # |
---|
| 167 | # >>>>>> EXECUTION < < < < |
---|
| 168 | ########################## |
---|
| 169 | |
---|
| 170 | case ${RUN} in |
---|
| 171 | 'mon' | 'omp' ) |
---|
| 172 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
---|
| 173 | 'mpi' ) |
---|
| 174 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
---|
[1297] | 175 | #-T- aix6 ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
---|
[695] | 176 | #-T- osxxlf mpd& |
---|
| 177 | #-T- osxxlf sleep 5 |
---|
| 178 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} |
---|
| 179 | #-T- osxxlf mpdallexit ;; |
---|
| 180 | esac |
---|
| 181 | |
---|
| 182 | ls -l |
---|
| 183 | # |
---|
| 184 | |
---|
| 185 | ############################################################## |
---|
| 186 | ############################################################## |
---|
| 187 | ############################################################## |
---|
| 188 | ### Save output files |
---|
| 189 | ############################################################## |
---|
| 190 | ############################################################## |
---|
| 191 | ############################################################## |
---|
| 192 | case ${RUN} in |
---|
| 193 | 'mon' | 'omp' ) |
---|
| 194 | liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;; |
---|
| 195 | 'mpi' ) |
---|
| 196 | liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;; |
---|
| 197 | esac |
---|
| 198 | |
---|
| 199 | # Ensure that all files saved are coming from the current run |
---|
| 200 | ind=1 |
---|
| 201 | for k in $liste_files |
---|
| 202 | do |
---|
| 203 | echo $k > temp |
---|
| 204 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
---|
[1054] | 205 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
---|
[695] | 206 | kc='perf*' |
---|
| 207 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
---|
| 208 | ind=0 |
---|
| 209 | fi |
---|
| 210 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
---|
| 211 | done |
---|
| 212 | |
---|
| 213 | ############################################################## |
---|
| 214 | ############################################################## |
---|
| 215 | ############################################################## |
---|
| 216 | ### Retrieve some reference run files |
---|
| 217 | ############################################################## |
---|
| 218 | ############################################################## |
---|
| 219 | ############################################################## |
---|
| 220 | if [ ${REF_TAG} ] |
---|
| 221 | then |
---|
| 222 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
---|
| 223 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
---|
| 224 | for ref_file in ${LFILES} |
---|
| 225 | do |
---|
| 226 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
---|
| 227 | done |
---|
| 228 | fi |
---|
| 229 | |
---|
| 230 | ############################################################## |
---|
| 231 | ############################################################## |
---|
| 232 | ############################################################## |
---|
| 233 | ### Launch restart job |
---|
| 234 | ############################################################## |
---|
| 235 | ############################################################## |
---|
| 236 | ############################################################## |
---|
| 237 | if [ $type = '1_short' ] ; then |
---|
| 238 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
---|
[744] | 239 | ${LAUNCH}job_${RUN}_2_short.ksh |
---|
[695] | 240 | fi |
---|