[1154] | 1 | # $Id$ |
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[795] | 2 | set -xv |
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| 3 | |
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| 4 | CONF=GYRE_LOBSTER |
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| 5 | # Variables changed by lance_batch.ksh script |
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| 6 | RUN=xxx |
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| 7 | NB_PROCS=xxx |
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| 8 | LAUNCH=xxx |
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| 9 | LEXE=xxx |
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| 10 | CPERF=xxx |
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| 11 | D_INPUT=xxx |
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| 12 | D_GET=xxx |
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| 13 | REF_TAG=xxx |
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[1301] | 14 | MYO_EXP=xxx |
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[795] | 15 | TSYMB=xxx |
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| 16 | |
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| 17 | # Variables changed by ins_valid.ksh script |
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[1301] | 18 | MAINDIR=/workdir/rech/eee/reee534/AUTRE |
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| 19 | WORK=/workdir/rech/eee/reee534/AUTRE/modipsl/config/ |
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| 20 | REF_OD=/u/rech/eee/reee831/NEMO_VALIDATION |
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[795] | 21 | |
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| 22 | # Arguments |
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| 23 | # type = 'long' or '1_short' or '2_short' |
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| 24 | type=$1 |
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| 25 | |
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| 26 | case ${type} in |
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| 27 | 'long' ) |
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| 28 | DIROUT='LONG' |
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| 29 | ITERATIONS=360 ;; |
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| 30 | |
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| 31 | '1_short' ) |
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| 32 | DIROUT='1_SHORT' |
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| 33 | ITERATIONS=180 ;; |
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| 34 | |
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| 35 | '2_short' ) |
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| 36 | DIROUT='2_SHORT' |
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| 37 | ITERATIONS=180 ;; |
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| 38 | |
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| 39 | 'gtime' ) |
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| 40 | DIROUT='GTIME' |
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| 41 | ITERATIONS=4320 ;; |
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| 42 | esac |
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| 43 | |
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| 44 | # Working directory |
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| 45 | cd ${TMPDIR} |
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[1301] | 46 | #-T- osxxlf mkdir -p ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/RUN |
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| 47 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/RUN |
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[795] | 48 | #-T- osxxlf zback=$? |
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| 49 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
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| 50 | |
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| 51 | ############################################################## |
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| 52 | ############################################################## |
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| 53 | ############################################################## |
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| 54 | ### Input files |
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| 55 | ############################################################## |
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| 56 | ############################################################## |
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| 57 | ############################################################## |
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[1301] | 58 | # Local function to copy namelists files |
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| 59 | get_namelist () { |
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| 60 | if [ -a $1/$2_$3 ] ; then |
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| 61 | cp $1/$2_$3 $4 |
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| 62 | else |
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| 63 | echo ' ###############################################################' |
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| 64 | echo ' ######################## W A R N I N G ########################' |
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| 65 | echo ' ######################## W A R N I N G ########################' |
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| 66 | echo ' ######################## W A R N I N G ########################' |
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| 67 | echo ' ###############################################################' |
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| 68 | echo " $2_$3 file doesn't exist, we use the standard $2" |
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| 69 | echo ' ###############################################################' |
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| 70 | echo ' ######################## W A R N I N G ########################' |
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| 71 | echo ' ######################## W A R N I N G ########################' |
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| 72 | echo ' ######################## W A R N I N G ########################' |
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| 73 | echo ' ###############################################################' |
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| 74 | cp $1/$2 $4 |
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| 75 | fi |
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| 76 | } |
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[795] | 77 | |
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[1144] | 78 | # Local function to find namelists parameters |
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| 79 | supergrep () { |
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| 80 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 81 | } |
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| 82 | |
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[1301] | 83 | # Ocean namelist |
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| 84 | LOC_NAM=${MAINDIR}/modipsl/config/${CONF}/EXP00 |
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| 85 | get_namelist ${LOC_NAM} namelist ${MYO_EXP} namelist |
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| 86 | |
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| 87 | # Biogeochemistry namelists |
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[1365] | 88 | get_namelist ${LOC_NAM} namelist_top ${MYO_EXP} namelist_top |
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| 89 | get_namelist ${LOC_NAM} namelist_lobster ${MYO_EXP} namelist_lobster |
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[1301] | 90 | |
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[795] | 91 | # namelist modifications |
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[1144] | 92 | PAT_NIT000=$( supergrep nit000 namelist ) |
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| 93 | PAT_NITEND=$( supergrep nitend namelist ) |
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| 94 | PAT_NSTOCK=$( supergrep nstock namelist ) |
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| 95 | PAT_NWRITE=$( supergrep nwrite namelist ) |
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| 96 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
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| 97 | PAT_NBITCM=$( supergrep nbit_cmp namelist ) |
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| 98 | PAT_NSOLVV=$( supergrep nsolv namelist ) |
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| 99 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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| 100 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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[795] | 101 | |
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[1144] | 102 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
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| 103 | -e "s%$PAT_NIT000% nit000 = 1 %" \ |
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| 104 | -e "s%$PAT_NITEND% nitend = ${ITERATIONS} %" \ |
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| 105 | -e "s%$PAT_NSTOCK% nstock = ${ITERATIONS} %" \ |
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[1150] | 106 | -e "s%$PAT_NWRITE% nwrite = 60 %" \ |
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[1144] | 107 | -e "s%$PAT_NRSTDT% nrstdt = 0 %" \ |
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| 108 | -e "s%$PAT_NBITCM% nbit_cmp = 1%" \ |
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| 109 | -e "s%$PAT_NSOLVV% nsolv = 2%" \ |
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| 110 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" namelist > nam.tmp |
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[795] | 111 | |
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| 112 | mv nam.tmp namelist |
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| 113 | |
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| 114 | # namelist modifications |
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[1365] | 115 | PAT_NWRITRC=$( supergrep nwritetrc namelist_top ) |
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| 116 | PAT_NWRITRD=$( supergrep ntrd_trc namelist_top ) |
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| 117 | PAT_RESTTRD=$( supergrep ln_trdmld_trc_restart namelist_top ) |
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| 118 | PAT_LTRCRAD=$( supergrep ln_trcrad namelist_top ) |
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[795] | 119 | |
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[1184] | 120 | sed -e "s%$PAT_NWRITRC% nwritetrc = ${ITERATIONS}%" \ |
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| 121 | -e "s%$PAT_NWRITRD% ntrd_trc = ${ITERATIONS}%" \ |
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[1262] | 122 | -e "s%$PAT_LTRCRAD% ln_trcrad = .false.%" \ |
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[1365] | 123 | -e "s%$PAT_RESTTRD% ln_trdmld_trc_restart = .false.%" namelist_top > nam.tmp |
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[795] | 124 | |
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[1107] | 125 | mv nam.tmp namelist_top |
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[795] | 126 | |
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[1365] | 127 | PAT_ADD=$( supergrep nwritedia namelist_lobster ) |
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| 128 | sed -e "s%$PAT_ADD% nwritedia = ${ITERATIONS}%" namelist_lobster > nam.tmp |
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[1128] | 129 | mv nam.tmp namelist_lobster |
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[795] | 130 | |
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| 131 | # Analytical forcing |
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| 132 | |
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| 133 | # Get restarts files if needed |
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| 134 | if [ $type = '2_short' ] |
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| 135 | then |
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| 136 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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[1301] | 137 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart.nc restart.nc |
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| 138 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld.nc restart_mld.nc |
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| 139 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_trc.nc restart_trc.nc |
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| 140 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld_trc.nc restart_mld_trc.nc |
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[795] | 141 | fi |
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| 142 | |
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| 143 | if [ ${RUN} = 'mpi' ] ; then |
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| 144 | typeset -Z4 i=0 |
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| 145 | while [ $i -lt $NB_PROCS ] |
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| 146 | do |
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[1301] | 147 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_${i}.nc restart_${i}.nc |
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| 148 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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| 149 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_trc_${i}.nc restart_trc_${i}.nc |
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| 150 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld_trc_${i}.nc restart_mld_trc_${i}.nc |
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[795] | 151 | let i=$i+1 |
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| 152 | done |
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| 153 | fi |
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| 154 | |
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| 155 | # Ocean namelist modifications |
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[1144] | 156 | PAT_NIT000=$( supergrep nit000 namelist ) |
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| 157 | PAT_NITEND=$( supergrep nitend namelist ) |
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| 158 | PAT_NRSTDT=$( supergrep nrstdt namelist ) |
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| 159 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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| 160 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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[795] | 161 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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| 162 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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| 163 | |
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[1144] | 164 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
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| 165 | -e "s%$PAT_NIT000% nit000 = $ORCA_NIT000 %" \ |
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| 166 | -e "s%$PAT_NITEND% nitend = $ORCA_NITEND %" \ |
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| 167 | -e "s%$PAT_NRSTDT% nrstdt = 2%" \ |
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| 168 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" namelist > nam.tmp |
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[795] | 169 | |
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| 170 | mv nam.tmp namelist |
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| 171 | |
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| 172 | # Biogeochemistry namelist modifications |
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[1544] | 173 | PAT_RESTAR=$( supergrep ln_rsttr namelist_top ) |
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[1184] | 174 | PAT_RESTRD=$( supergrep ln_trdmld_trc_restart namelist_top ) |
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| 175 | |
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[1544] | 176 | sed -e "s%$PAT_RESTAR% ln_rsttr = .true. %" \ |
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[1184] | 177 | -e "s%$PAT_RESTRD% ln_trdmld_trc_restart = .true.%" namelist_top > nam.tmp |
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| 178 | |
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[1107] | 179 | mv nam.tmp namelist_top |
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[795] | 180 | |
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| 181 | fi |
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| 182 | |
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| 183 | ############################################################## |
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| 184 | ############################################################## |
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| 185 | ############################################################## |
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| 186 | ### Launch run |
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| 187 | ############################################################## |
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| 188 | ############################################################## |
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| 189 | ############################################################## |
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| 190 | |
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[1301] | 191 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN}_${MYO_EXP} opa_${CONF}_${RUN}_${MYO_EXP} |
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| 192 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo_${MYO_EXP} opa_${CONF}_memo_${MYO_EXP} |
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| 193 | chmod 777 opa_${CONF}_${RUN}_${MYO_EXP} |
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| 194 | chmod 777 opa_${CONF}_memo_${MYO_EXP} |
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[795] | 195 | |
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| 196 | # |
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| 197 | # Profiling & Executable memory size |
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| 198 | #################################### |
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| 199 | touch memory_size.txt |
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| 200 | |
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| 201 | case ${RUN} in |
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| 202 | 'mon' ) |
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| 203 | #-T- sx8brodie export F_PROGINF=detail |
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[1301] | 204 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 205 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1365] | 206 | #-T- sx8mercure export F_PROGINF=detail |
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| 207 | #-T- sx8mercure echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 208 | #-T- sx8mercure echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1402] | 209 | #-T- aix6 echo "Stack memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt |
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| 210 | #-T- aix6 echo "Static memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1301] | 211 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt |
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| 212 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt ;; |
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[795] | 213 | 'mpi' ) |
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| 214 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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[1365] | 215 | #-T- sx8mercure export MPIPROGINF=detail ;; |
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[1402] | 216 | #-T- aix6 ;; |
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[1297] | 217 | #-T- osxxlf ;; |
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[795] | 218 | 'omp' ) |
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| 219 | #-T- sx8brodie export F_PROGINF=detail |
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| 220 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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[1365] | 221 | #-T- sx8mercure export F_PROGINF=detail |
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| 222 | #-T- sx8mercure export OMP_NUM_THREADS=${NB_PROCS} ;; |
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[1402] | 223 | #-T- aix6 ;; |
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[1297] | 224 | #-T- osxxlf ;; |
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[795] | 225 | esac |
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| 226 | # |
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| 227 | # >>>>>> EXECUTION < < < < |
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| 228 | ########################## |
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| 229 | |
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| 230 | case ${RUN} in |
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| 231 | 'mon' | 'omp' ) |
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[1301] | 232 | ${CPERF} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[795] | 233 | 'mpi' ) |
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[1365] | 234 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 235 | #-T- sx8mercure ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[1301] | 236 | #-T- aix6 ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[795] | 237 | #-T- osxxlf mpd& |
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| 238 | #-T- osxxlf sleep 5 |
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[1301] | 239 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} |
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[795] | 240 | #-T- osxxlf mpdallexit ;; |
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| 241 | esac |
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| 242 | |
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| 243 | ls -l |
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| 244 | # |
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| 245 | |
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| 246 | ############################################################## |
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| 247 | ############################################################## |
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| 248 | ############################################################## |
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| 249 | ### Save output files |
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| 250 | ############################################################## |
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| 251 | ############################################################## |
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| 252 | ############################################################## |
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| 253 | case ${RUN} in |
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| 254 | 'mon' | 'omp' ) |
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| 255 | liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;; |
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| 256 | 'mpi' ) |
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| 257 | liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;; |
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| 258 | esac |
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| 259 | |
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| 260 | # Ensure that all files saved are coming from the current run |
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| 261 | ind=1 |
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| 262 | for k in $liste_files |
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| 263 | do |
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| 264 | echo $k > temp |
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| 265 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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[1054] | 266 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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[795] | 267 | kc='perf*' |
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[1301] | 268 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/${kc} |
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[795] | 269 | ind=0 |
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| 270 | fi |
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[1301] | 271 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/$k |
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[795] | 272 | done |
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| 273 | |
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| 274 | ############################################################## |
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| 275 | ############################################################## |
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| 276 | ############################################################## |
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| 277 | ### Retrieve some reference run files |
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| 278 | ############################################################## |
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| 279 | ############################################################## |
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| 280 | ############################################################## |
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| 281 | if [ ${REF_TAG} ] |
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| 282 | then |
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| 283 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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| 284 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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| 285 | for ref_file in ${LFILES} |
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| 286 | do |
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| 287 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
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| 288 | done |
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| 289 | fi |
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| 290 | |
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| 291 | ############################################################## |
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| 292 | ############################################################## |
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| 293 | ############################################################## |
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| 294 | ### Launch restart job |
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| 295 | ############################################################## |
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| 296 | ############################################################## |
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| 297 | ############################################################## |
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| 298 | if [ $type = '1_short' ] ; then |
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[1301] | 299 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT/${MYO_EXP} |
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| 300 | ${LAUNCH}job_${RUN}_2_short_${MYO_EXP}.ksh |
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[795] | 301 | fi |
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