Changeset 1144 for trunk/NVTK/INSTALL/JOBS/job_GYRE_LOBSTER.ksh

Timestamp:

2008-06-25T11:25:34+02:00 (16 years ago)

Author:

ctlod

Message:

trunk: improve the treatment of namelists in NVTK jobs based on sed and grep UNIX commands, see ticket: #222

File:

• trunk/NVTK/INSTALL/JOBS/job_GYRE_LOBSTER.ksh (modified) (3 diffs)

trunk/NVTK/INSTALL/JOBS/job_GYRE_LOBSTER.ksh

@@ -56 +56 @@
 cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist .
 
+# Local function to find namelists parameters
+supergrep () {
+    grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%"
+}
+
 # namelist modifications
-PAT_NIT000=$( grep 'nit000      =' namelist )
-PAT_NITEND=$( grep 'nitend      =' namelist )
-PAT_NSTOCK=$( grep 'nstock      =' namelist )
-PAT_NWRITE=$( grep 'nwrite      =' namelist )
-PAT_NRSTDT=$( grep 'nrstdt      =' namelist )
-PAT_NBITCM=$( grep 'nbit_cmp   ='   namelist )
-PAT_NSOLVV=$( grep 'nsolv       =' namelist )
-PAT_RESTAR=$( grep 'ln_rstart   =' namelist )
-PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
-
-sed    -e "s%$PAT_RESTAR%   ln_rstart   =  .false.%" \
--e "s%$PAT_NIT000%   nit000     =     1%" \
--e "s%$PAT_NITEND%   nitend     =     ${ITERATIONS}%" \
--e "s%$PAT_NSTOCK%   nstock     =     ${ITERATIONS}%" \
--e "s%$PAT_NWRITE%   nwrite     =     75%" \
--e "s%$PAT_NRSTDT%   nrstdt     =     0%" \
--e "s%$PAT_NBITCM%   nbit_cmp =     1%" \
--e "s%$PAT_NSOLVV%   nsolv     =      2%" \
--e "s%$PAT_RESMLD%   ln_trdmld_restart =  .false.%" \
-namelist > nam.tmp
+PAT_NIT000=$( supergrep nit000             namelist )
+PAT_NITEND=$( supergrep nitend             namelist )
+PAT_NSTOCK=$( supergrep nstock             namelist )
+PAT_NWRITE=$( supergrep nwrite             namelist )
+PAT_NRSTDT=$( supergrep nrstdt             namelist )
+PAT_NBITCM=$( supergrep nbit_cmp           namelist )
+PAT_NSOLVV=$( supergrep nsolv              namelist )
+PAT_RESTAR=$( supergrep ln_rstart          namelist )
+PAT_RESMLD=$( supergrep ln_trdmld_restart  namelist )
+
+sed -e "s%$PAT_RESTAR%   ln_rstart   =  .false.%"          \
+    -e "s%$PAT_NIT000%   nit000     =     1   %"           \
+    -e "s%$PAT_NITEND%   nitend     =     ${ITERATIONS} %" \
+    -e "s%$PAT_NSTOCK%   nstock     =     ${ITERATIONS} %" \
+    -e "s%$PAT_NWRITE%   nwrite     =     75  %"           \
+    -e "s%$PAT_NRSTDT%   nrstdt     =     0   %"           \
+    -e "s%$PAT_NBITCM%   nbit_cmp   =     1%"              \
+    -e "s%$PAT_NSOLVV%   nsolv     =      2%"              \
+    -e "s%$PAT_RESMLD%   ln_trdmld_restart =  .false.%" namelist > nam.tmp
 
 mv nam.tmp namelist
@@ -85 +89 @@
 
 # namelist modifications
-PAT_TRC=$( grep 'nwritetrc   =' namelist_top_f90 )
-PAT_TRD=$( grep 'nwritetrd  ='  namelist_top_f90 )
-
-sed    -e "s/$PAT_TRC/   nwritetrc   = ${ITERATIONS},/" \
--e "s/$PAT_TRD/   nwritetrd  = ${ITERATIONS},/" \
-namelist_top_f90 > nam.tmp
+PAT_TRC=$( supergrep nwritetrc  namelist_top_f90 )
+PAT_TRD=$( supergrep nwritetrd  namelist_top_f90 )
+
+sed -e "s%$PAT_TRC%   nwritetrc   = ${ITERATIONS}%" \
+    -e "s%$PAT_TRD%   nwritetrd  = ${ITERATIONS}%"  namelist_top_f90 > nam.tmp
 
 mv nam.tmp namelist_top
 
-PAT_ADD=$( grep 'nwritedia    =' namelist_lobster_f90 )
-sed    -e "s/$PAT_ADD/   nwritedia    = ${ITERATIONS},/" namelist_lobster_f90 > nam.tmp
+PAT_ADD=$( supergrep nwritedia namelist_lobster_f90 )
+sed -e "s%$PAT_ADD%   nwritedia    = ${ITERATIONS}%" namelist_lobster_f90 > nam.tmp
 mv nam.tmp namelist_lobster
 
@@ -121 +124 @@
 
     # Ocean namelist modifications
-    PAT_NIT000=$( grep 'nit000     =' namelist )
-    PAT_NITEND=$( grep 'nitend     =' namelist )
-    PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
-    PAT_RESTAR=$( grep 'ln_rstart   =' namelist )
-    PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
+    PAT_NIT000=$( supergrep nit000             namelist )
+    PAT_NITEND=$( supergrep nitend             namelist )
+    PAT_NRSTDT=$( supergrep nrstdt             namelist )
+    PAT_RESTAR=$( supergrep ln_rstart          namelist )
+    PAT_RESMLD=$( supergrep ln_trdmld_restart  namelist )
     ORCA_NIT000=$(( $ITERATIONS + 1 ))
     ORCA_NITEND=$(( $ITERATIONS*2 ))
     
-    sed    -e "s/$PAT_RESTAR/   ln_rstart   =  .true./" \
-    -e "s/$PAT_NIT000/   nit000     =     $ORCA_NIT000/" \
-    -e "s/$PAT_NITEND/   nitend     =     $ORCA_NITEND/" \
-    -e "s/$PAT_NRSTDT/   nrstdt     =     2/" \
-    -e "s/$PAT_RESMLD/   ln_trdmld_restart =  .true./" \
-    namelist > nam.tmp
+    sed  -e "s%$PAT_RESTAR%   ln_rstart   =  .true.%"          \
+         -e "s%$PAT_NIT000%   nit000     =     $ORCA_NIT000 %" \
+         -e "s%$PAT_NITEND%   nitend     =     $ORCA_NITEND %" \
+         -e "s%$PAT_NRSTDT%   nrstdt     =     2%"             \
+         -e "s%$PAT_RESMLD%   ln_trdmld_restart =  .true.%" namelist > nam.tmp
     
     mv nam.tmp namelist
 
     # Biogeochemistry namelist modifications
-    PAT_RESTAR=$( grep '   lrsttr      = ' namelist_top )
-    
-    sed    -e "s/$PAT_RESTAR/   lrsttr      = .true.,/" namelist_top > nam.tmp
-    
+    PAT_RESTAR=$( supergrep lrsttr  namelist_top )
+    sed -e "s%$PAT_RESTAR%   lrsttr      = .true. %" namelist_top > nam.tmp
     mv nam.tmp namelist_top