[1154] | 1 | # $Id$ |
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[695] | 2 | set -xv |
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| 3 | |
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| 4 | CONF=ORCA2_LIM |
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| 5 | # Variables changed by lance_batch.ksh script |
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| 6 | RUN=xxx |
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| 7 | NB_PROCS=xxx |
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| 8 | LAUNCH=xxx |
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| 9 | LEXE=xxx |
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| 10 | CPERF=xxx |
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| 11 | D_INPUT=xxx |
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| 12 | D_GET=xxx |
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| 13 | REF_TAG=xxx |
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[1301] | 14 | MYO_EXP=xxx |
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[695] | 15 | TSYMB=xxx |
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[1412] | 16 | USE_IOMPUT=xxx |
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| 17 | USE_IOSERVER=xxx |
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| 18 | NB_PROCS_IOSERVER=xxx |
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| 19 | # |
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[695] | 20 | # Variables changed by ins_valid.ksh script |
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[1301] | 21 | MAINDIR=/workdir/rech/eee/reee534/AUTRE |
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| 22 | WORK=/workdir/rech/eee/reee534/AUTRE/modipsl/config/ |
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| 23 | REF_OD=/u/rech/eee/reee831/NEMO_VALIDATION |
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[695] | 24 | |
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| 25 | # Arguments |
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| 26 | # type = 'long' or '1_short' or '2_short' |
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| 27 | type=$1 |
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| 28 | |
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| 29 | case ${type} in |
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| 30 | 'long' ) |
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| 31 | DIROUT='LONG' |
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[1403] | 32 | ITERATIONS=300 ;; |
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[695] | 33 | |
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| 34 | '1_short' ) |
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| 35 | DIROUT='1_SHORT' |
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[1403] | 36 | ITERATIONS=150 ;; |
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[695] | 37 | |
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| 38 | '2_short' ) |
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| 39 | DIROUT='2_SHORT' |
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[1403] | 40 | ITERATIONS=150 ;; |
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[695] | 41 | |
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| 42 | 'gtime' ) |
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| 43 | DIROUT='GTIME' |
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| 44 | ITERATIONS=5475 ;; |
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| 45 | esac |
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| 46 | |
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| 47 | # Working directory |
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| 48 | cd ${TMPDIR} |
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[1301] | 49 | #-T- osxxlf mkdir -p ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/RUN |
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| 50 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/RUN |
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[695] | 51 | #-T- osxxlf zback=$? |
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| 52 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
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| 53 | |
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| 54 | ############################################################## |
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| 55 | ############################################################## |
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| 56 | ############################################################## |
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| 57 | ### Input files |
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| 58 | ############################################################## |
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| 59 | ############################################################## |
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| 60 | ############################################################## |
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[1301] | 61 | # Local function to copy namelists files |
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| 62 | get_namelist () { |
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| 63 | if [ -a $1/$2_$3 ] ; then |
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| 64 | cp $1/$2_$3 $4 |
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| 65 | else |
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| 66 | echo ' ###############################################################' |
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| 67 | echo ' ######################## W A R N I N G ########################' |
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| 68 | echo ' ######################## W A R N I N G ########################' |
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| 69 | echo ' ######################## W A R N I N G ########################' |
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| 70 | echo ' ###############################################################' |
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| 71 | echo " $2_$3 file doesn't exist, we use the standard $2" |
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| 72 | echo ' ###############################################################' |
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| 73 | echo ' ######################## W A R N I N G ########################' |
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| 74 | echo ' ######################## W A R N I N G ########################' |
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| 75 | echo ' ######################## W A R N I N G ########################' |
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| 76 | echo ' ###############################################################' |
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| 77 | cp $1/$2 $4 |
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| 78 | fi |
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| 79 | } |
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| 80 | |
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| 81 | # Local function to find namelists parameters |
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| 82 | supergrep () { |
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| 83 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 84 | } |
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| 85 | |
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[695] | 86 | # Ocean namelist |
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[1301] | 87 | LOC_NAM=${MAINDIR}/modipsl/config/${CONF}/EXP00 |
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| 88 | get_namelist ${LOC_NAM} namelist ${MYO_EXP} namelist |
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[695] | 89 | |
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| 90 | # Sea-Ice namelist |
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[1301] | 91 | get_namelist ${LOC_NAM} namelist_ice_lim2 ${MYO_EXP} namelist_ice |
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[695] | 92 | |
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[1359] | 93 | # iom_put xml file |
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[1412] | 94 | if [ "${USE_IOMPUT}" = "true" ] |
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| 95 | then |
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| 96 | get_namelist ${LOC_NAM} xmlio_server.def ${MYO_EXP} xmlio_server.def |
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| 97 | get_namelist ${LOC_NAM} iodef.xml ${MYO_EXP} iodef.xml |
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| 98 | sed -e "s/^ *using_server *=.*$/ using_server = .${USE_IOSERVER}./" xmlio_server.def > tmp$$ |
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| 99 | mv tmp$$ xmlio_server.def |
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| 100 | fi |
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[1359] | 101 | |
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[1144] | 102 | # Local function to find namelists parameters |
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| 103 | supergrep () { |
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| 104 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 105 | } |
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| 106 | |
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[695] | 107 | # namelist modifications |
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[1603] | 108 | PAT_NIT000=$( supergrep nn_it000 namelist ) |
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| 109 | PAT_NITEND=$( supergrep nn_itend namelist ) |
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| 110 | PAT_NSTOCK=$( supergrep nn_stock namelist ) |
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| 111 | PAT_NWRITE=$( supergrep nn_write namelist ) |
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| 112 | PAT_NRSTDT=$( supergrep nn_rstctl namelist ) |
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| 113 | PAT_NBITCM=$( supergrep nn_bit_cmp namelist ) |
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[1144] | 114 | PAT_TRACEN=$( supergrep ln_traadv_cen2 namelist ) |
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| 115 | PAT_TRATVD=$( supergrep ln_traadv_tvd namelist ) |
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[1603] | 116 | PAT_N_CLAA=$( supergrep nn_cla namelist ) |
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| 117 | PAT_NSOLVV=$( supergrep nn_solv namelist ) |
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[1144] | 118 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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| 119 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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[1620] | 120 | PAT_NN_FWB=$( supergrep nn_fwb namelist ) |
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| 121 | PAT_NNSSSR=$( supergrep nn_sssr namelist ) |
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[695] | 122 | |
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[1144] | 123 | sed -e "s%$PAT_RESTAR% ln_rstart = .false.%" \ |
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[1603] | 124 | -e "s%$PAT_NIT000% nn_it000 = 1 %" \ |
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| 125 | -e "s%$PAT_NITEND% nn_itend = ${ITERATIONS} %" \ |
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| 126 | -e "s%$PAT_NSTOCK% nn_stock = ${ITERATIONS} %" \ |
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| 127 | -e "s%$PAT_NWRITE% nn_write = 75 %" \ |
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| 128 | -e "s%$PAT_NRSTDT% nn_rstctl = 0 %" \ |
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| 129 | -e "s%$PAT_NBITCM% nn_bit_cmp = 1%" \ |
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[1144] | 130 | -e "s%$PAT_TRACEN% ln_traadv_cen2 = .false.%" \ |
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| 131 | -e "s%$PAT_TRATVD% ln_traadv_tvd = .true.%" \ |
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[1603] | 132 | -e "s%$PAT_N_CLAA% nn_cla = 0%" \ |
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| 133 | -e "s%$PAT_NSOLVV% nn_solv = 2%" \ |
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[1620] | 134 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .false.%" \ |
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| 135 | -e "s%$PAT_NN_FWB% nn_fwb = 0%" \ |
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| 136 | -e "s%$PAT_NNSSSR% nn_sssr = 1%" namelist > nam.tmp |
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[695] | 137 | |
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| 138 | mv nam.tmp namelist |
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| 139 | |
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| 140 | # Get forcing files |
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[2040] | 141 | ${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.2.tar ORCA2_LIM_nemo_v3.2.tar |
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| 142 | tar xvf ORCA2_LIM_nemo_v3.2.tar |
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| 143 | rm -f ORCA2_LIM_nemo_v3.2.tar |
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[695] | 144 | |
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| 145 | # Get restarts files if needed |
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| 146 | if [ $type = '2_short' ] |
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| 147 | then |
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| 148 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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[1301] | 149 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart.nc restart.nc |
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| 150 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*restart_ice.nc restart_ice_in.nc |
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| 151 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld.nc restart_mld.nc |
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[695] | 152 | fi |
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| 153 | |
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| 154 | if [ ${RUN} = 'mpi' ] ; then |
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| 155 | typeset -Z4 i=0 |
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| 156 | while [ $i -lt $NB_PROCS ] |
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| 157 | do |
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[1301] | 158 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_${i}.nc restart_${i}.nc |
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| 159 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*restart_ice_${i}.nc restart_ice_in_${i}.nc |
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| 160 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/${MYO_EXP}/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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[695] | 161 | let i=$i+1 |
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| 162 | done |
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| 163 | fi |
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| 164 | |
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[1144] | 165 | # Ocean namelist modifications |
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[1603] | 166 | PAT_NIT000=$( supergrep nn_it000 namelist ) |
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| 167 | PAT_NITEND=$( supergrep nn_itend namelist ) |
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| 168 | PAT_NRSTDT=$( supergrep nn_rstctl namelist ) |
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[1144] | 169 | PAT_RESTAR=$( supergrep ln_rstart namelist ) |
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| 170 | PAT_RESMLD=$( supergrep ln_trdmld_restart namelist ) |
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[695] | 171 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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| 172 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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| 173 | |
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[1144] | 174 | sed -e "s%$PAT_RESTAR% ln_rstart = .true.%" \ |
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[1603] | 175 | -e "s%$PAT_NIT000% nn_it000 = $ORCA_NIT000 %" \ |
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| 176 | -e "s%$PAT_NITEND% nn_itend = $ORCA_NITEND %" \ |
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| 177 | -e "s%$PAT_NRSTDT% nn_rstctl = 2%" \ |
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[1144] | 178 | -e "s%$PAT_RESMLD% ln_trdmld_restart = .true.%" namelist > nam.tmp |
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[695] | 179 | |
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| 180 | mv nam.tmp namelist |
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| 181 | |
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| 182 | fi |
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| 183 | |
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| 184 | ############################################################## |
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| 185 | ############################################################## |
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| 186 | ############################################################## |
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| 187 | ### Launch run |
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| 188 | ############################################################## |
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| 189 | ############################################################## |
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| 190 | ############################################################## |
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| 191 | |
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[1576] | 192 | cp ${MAINDIR}/modipsl/bin/opa_${CONF}_${RUN}_${MYO_EXP} opa_${CONF}_${RUN}_${MYO_EXP} |
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| 193 | cp ${MAINDIR}/modipsl/bin/opa_${CONF}_memo_${MYO_EXP} opa_${CONF}_memo_${MYO_EXP} |
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[1301] | 194 | chmod 777 opa_${CONF}_${RUN}_${MYO_EXP} |
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| 195 | chmod 777 opa_${CONF}_memo_${MYO_EXP} |
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[1412] | 196 | if [ "${USE_IOSERVER}" = "true" ] |
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| 197 | then |
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[1781] | 198 | cp ${MAINDIR}/modipsl/bin/ioserver ioserver |
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[1412] | 199 | chmod 777 ioserver |
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| 200 | fi |
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[695] | 201 | # |
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| 202 | # Profiling & Executable memory size |
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| 203 | #################################### |
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| 204 | touch memory_size.txt |
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| 205 | |
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| 206 | case ${RUN} in |
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| 207 | 'mon' ) |
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| 208 | #-T- sx8brodie export F_PROGINF=detail |
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[1301] | 209 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 210 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1603] | 211 | #-T- sx8mercure export F_PROGINF=detail |
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[1365] | 212 | #-T- sx8mercure echo "Stack memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt |
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| 213 | #-T- sx8mercure echo "Static memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1402] | 214 | #-T- aix6 echo "Stack memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt |
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| 215 | #-T- aix6 echo "Static memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt ;; |
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[1301] | 216 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo_${MYO_EXP}) )" >> memory_size.txt |
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| 217 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}_${MYO_EXP}) )" >> memory_size.txt ;; |
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[695] | 218 | 'mpi' ) |
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| 219 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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[1365] | 220 | #-T- sx8mercure export MPIPROGINF=detail ;; |
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[1297] | 221 | #-T- aix6 ;; |
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| 222 | #-T- osxxlf ;; |
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[695] | 223 | 'omp' ) |
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| 224 | #-T- sx8brodie export F_PROGINF=detail |
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| 225 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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[1365] | 226 | #-T- sx8mercure export F_PROGINF=detail |
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| 227 | #-T- sx8mercure export OMP_NUM_THREADS=${NB_PROCS} ;; |
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[1297] | 228 | #-T- aix6 ;; |
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| 229 | #-T- osxxlf ;; |
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[695] | 230 | esac |
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| 231 | # |
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| 232 | # >>>>>> EXECUTION < < < < |
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| 233 | ########################## |
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| 234 | |
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[1412] | 235 | |
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| 236 | if [ "${USE_IOSERVER}" = "true" ] |
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| 237 | then |
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| 238 | #-T- aix6 rm -f cmdfile |
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| 239 | #-T- aix6 cnt=1 |
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| 240 | #-T- aix6 while [ $cnt -le ${NB_PROCS_IOSERVER} ] |
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| 241 | #-T- aix6 do |
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| 242 | #-T- aix6 echo "${CPERF#poe} ./ioserver" >> cmdfile |
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| 243 | #-T- aix6 cnt=$(( $cnt + 1 )) |
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| 244 | #-T- aix6 done |
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| 245 | #-T- aix6 cnt=1 |
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| 246 | #-T- aix6 while [ $cnt -le ${NB_PROCS} ] |
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| 247 | #-T- aix6 do |
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| 248 | #-T- aix6 echo "${CPERF#poe} ./opa_${CONF}_${RUN}_${MYO_EXP}" >> cmdfile |
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| 249 | #-T- aix6 cnt=$(( $cnt + 1 )) |
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| 250 | #-T- aix6 done |
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| 251 | #-T- aix6 poe -pgmmodel MPMD -cmdfile ./cmdfile |
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[1570] | 252 | #-T- sx8brodie echo "-p ${NB_PROCS_IOSERVER} -e ./ioserver" > cmdfile |
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| 253 | #-T- sx8brodie echo "-p ${NB_PROCS} -e ./opa_${CONF}_${RUN}_${MYO_EXP}" >> cmdfile |
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| 254 | #-T- sx8brodie ${CPERF} ${LEXE%% *} -f cmdfile |
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| 255 | #-T- sx8mercure echo "-p ${NB_PROCS_IOSERVER} -e ./ioserver" > cmdfile |
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| 256 | #-T- sx8mercure echo "-p ${NB_PROCS} -e ./opa_${CONF}_${RUN}_${MYO_EXP}" >> cmdfile |
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| 257 | #-T- sx8mercure ${CPERF} ${LEXE%% *} -f cmdfile |
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[1412] | 258 | else |
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| 259 | case ${RUN} in |
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[695] | 260 | 'mon' | 'omp' ) |
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[1301] | 261 | ${CPERF} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[695] | 262 | 'mpi' ) |
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[1365] | 263 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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| 264 | #-T- sx8mercure ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[1301] | 265 | #-T- aix6 ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} ;; |
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[695] | 266 | #-T- osxxlf mpd& |
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| 267 | #-T- osxxlf sleep 5 |
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[1301] | 268 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}_${MYO_EXP} |
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[695] | 269 | #-T- osxxlf mpdallexit ;; |
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[1412] | 270 | esac |
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| 271 | |
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| 272 | fi |
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[695] | 273 | |
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| 274 | ls -l |
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| 275 | # |
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| 276 | |
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| 277 | ############################################################## |
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| 278 | ############################################################## |
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| 279 | ############################################################## |
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| 280 | ### Save output files |
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| 281 | ############################################################## |
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| 282 | ############################################################## |
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| 283 | ############################################################## |
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| 284 | case ${RUN} in |
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| 285 | 'mon' | 'omp' ) |
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[1412] | 286 | liste_files='*abort* memory* namelist* *xml* perfs* cmdfile solver.stat ocean.output layout* ORCA2* restart* mono*' ;; |
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[695] | 287 | 'mpi' ) |
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[1412] | 288 | liste_files='*abort* namelist* *xml* solver.stat perfs* cmdfile ocean.output* layout* ORCA2* restart* mpp*' ;; |
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[695] | 289 | esac |
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| 290 | |
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| 291 | # Ensure that all files saved are coming from the current run |
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| 292 | ind=1 |
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| 293 | for k in $liste_files |
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| 294 | do |
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| 295 | echo $k > temp |
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| 296 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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[1054] | 297 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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[695] | 298 | kc='perf*' |
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[1301] | 299 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/${kc} |
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[695] | 300 | ind=0 |
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| 301 | fi |
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[1301] | 302 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${MYO_EXP}/$k |
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[695] | 303 | done |
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| 304 | |
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| 305 | ############################################################## |
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| 306 | ############################################################## |
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| 307 | ############################################################## |
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| 308 | ### Retrieve some reference run files |
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| 309 | ############################################################## |
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| 310 | ############################################################## |
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| 311 | ############################################################## |
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[2040] | 312 | if [ ${REF_TAG} = 'nemo_v2' -o ${REF_TAG} = 'nemo_v2_3' -o ${REF_TAG} = 'nemo_v3' -o ${REF_TAG} = 'nemo_v3_2' ] |
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[695] | 313 | then |
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| 314 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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| 315 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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[1564] | 316 | SAV_DIR=${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${REF_TAG} |
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| 317 | if [ ! -d ${SAV_DIR} ] ; then |
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| 318 | mkdir ${SAV_DIR} |
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| 319 | fi |
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[695] | 320 | for ref_file in ${LFILES} |
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| 321 | do |
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[1564] | 322 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${SAV_DIR}/${ref_file} |
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[695] | 323 | done |
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| 324 | fi |
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| 325 | |
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| 326 | ############################################################## |
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| 327 | ############################################################## |
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| 328 | ############################################################## |
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| 329 | ### Launch restart job |
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| 330 | ############################################################## |
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| 331 | ############################################################## |
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| 332 | ############################################################## |
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| 333 | if [ $type = '1_short' ] ; then |
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[1301] | 334 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT/${MYO_EXP} |
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| 335 | ${LAUNCH}job_${RUN}_2_short_${MYO_EXP}.ksh |
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[695] | 336 | fi |
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