[695] | 1 | set -xv |
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| 2 | |
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| 3 | CONF=ORCA2_LIM |
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| 4 | # Variables changed by lance_batch.ksh script |
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| 5 | RUN=xxx |
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| 6 | NB_PROCS=xxx |
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| 7 | LAUNCH=xxx |
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| 8 | LEXE=xxx |
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| 9 | CPERF=xxx |
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| 10 | D_INPUT=xxx |
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| 11 | D_GET=xxx |
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| 12 | REF_TAG=xxx |
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| 13 | TSYMB=xxx |
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| 14 | |
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| 15 | # Variables changed by ins_valid.ksh script |
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| 16 | MAINDIR=/Users/ctlod/WORK/AZE |
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| 17 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
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| 18 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
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| 19 | |
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| 20 | # Arguments |
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| 21 | # type = 'long' or '1_short' or '2_short' |
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| 22 | type=$1 |
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| 23 | |
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| 24 | case ${type} in |
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| 25 | 'long' ) |
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| 26 | DIROUT='LONG' |
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| 27 | ITERATIONS=210 ;; |
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| 28 | |
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| 29 | '1_short' ) |
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| 30 | DIROUT='1_SHORT' |
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| 31 | ITERATIONS=105 ;; |
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| 32 | |
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| 33 | '2_short' ) |
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| 34 | DIROUT='2_SHORT' |
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| 35 | ITERATIONS=105 ;; |
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| 36 | |
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| 37 | 'gtime' ) |
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| 38 | DIROUT='GTIME' |
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| 39 | ITERATIONS=5475 ;; |
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| 40 | esac |
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| 41 | |
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| 42 | # Working directory |
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| 43 | cd ${TMPDIR} |
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| 44 | #-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN |
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| 45 | #-T- osxxlf zback=$? |
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| 46 | #-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi |
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| 47 | |
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| 48 | ############################################################## |
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| 49 | ############################################################## |
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| 50 | ############################################################## |
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| 51 | ### Input files |
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| 52 | ############################################################## |
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| 53 | ############################################################## |
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| 54 | ############################################################## |
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| 55 | # Ocean namelist |
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| 56 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist namelist_f90 |
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| 57 | sed -e /!/d namelist_f90 > namelist |
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| 58 | |
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| 59 | # Sea-Ice namelist |
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| 60 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_ice namelist_ice_f90 |
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| 61 | sed -e /!/d namelist_ice_f90 > namelist_ice |
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| 62 | |
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| 63 | # namelist modifications |
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| 64 | PAT_NIT000=$( grep 'nit000 =' namelist ) |
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| 65 | PAT_NITEND=$( grep 'nitend =' namelist ) |
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| 66 | PAT_NSTOCK=$( grep 'nstock =' namelist ) |
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| 67 | PAT_NWRITE=$( grep 'nwrite =' namelist ) |
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| 68 | PAT_NRSTDT=$( grep 'nrstdt =' namelist ) |
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| 69 | PAT_NBITCM=$( grep 'nbit_cmp =' namelist ) |
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| 70 | PAT_TRACEN=$( grep 'ln_traadv_cen2 =' namelist ) |
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| 71 | PAT_TRATVD=$( grep 'ln_traadv_tvd =' namelist ) |
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| 72 | PAT_N_CLAA=$( grep 'n_cla =' namelist ) |
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| 73 | PAT_NSOLVV=$( grep 'nsolv =' namelist ) |
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| 74 | PAT_RESTAR=$( grep 'ln_rstart =' namelist ) |
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| 75 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist ) |
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| 76 | |
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| 77 | sed -e "s/$PAT_RESTAR/ ln_rstart = .false./" \ |
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| 78 | -e "s/$PAT_NIT000/ nit000 = 1/" \ |
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| 79 | -e "s/$PAT_NITEND/ nitend = ${ITERATIONS}/" \ |
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| 80 | -e "s/$PAT_NSTOCK/ nstock = ${ITERATIONS}/" \ |
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| 81 | -e "s/$PAT_NWRITE/ nwrite = 75/" \ |
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| 82 | -e "s/$PAT_NRSTDT/ nrstdt = 0/" \ |
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| 83 | -e "s/$PAT_NBITCM/ nbit_cmp = 1/" \ |
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| 84 | -e "s/$PAT_TRACEN/ ln_traadv_cen2 = .false./" \ |
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| 85 | -e "s/$PAT_TRATVD/ ln_traadv_tvd = .true./" \ |
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| 86 | -e "s/$PAT_N_CLAA/ n_cla = 0/" \ |
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| 87 | -e "s/$PAT_NSOLVV/ nsolv = 2/" \ |
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| 88 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .false./" \ |
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| 89 | namelist > nam.tmp |
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| 90 | |
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| 91 | mv nam.tmp namelist |
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| 92 | |
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| 93 | # Get forcing files |
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[957] | 94 | ${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.tar ORCA2_LIM_nemo_v3.tar |
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| 95 | tar xvf ORCA2_LIM_nemo_v3.tar |
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| 96 | rm -rf ORCA2_LIM_nemo_v3.tar |
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[695] | 97 | |
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| 98 | # Get restarts files if needed |
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| 99 | if [ $type = '2_short' ] |
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| 100 | then |
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| 101 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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| 102 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc |
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| 103 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice.nc restart_ice_in.nc |
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| 104 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
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| 105 | fi |
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| 106 | |
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| 107 | if [ ${RUN} = 'mpi' ] ; then |
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| 108 | typeset -Z4 i=0 |
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| 109 | while [ $i -lt $NB_PROCS ] |
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| 110 | do |
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| 111 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc |
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| 112 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice_${i}.nc restart_ice_in_${i}.nc |
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| 113 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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| 114 | let i=$i+1 |
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| 115 | done |
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| 116 | fi |
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| 117 | |
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| 118 | # namelist modifications |
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| 119 | PAT_NIT000=$( grep 'nit000 =' namelist ) |
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| 120 | PAT_NITEND=$( grep 'nitend =' namelist ) |
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| 121 | PAT_NRSTDT=$( grep 'nrstdt =' namelist ) |
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| 122 | PAT_RESTAR=$( grep 'ln_rstart =' namelist ) |
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| 123 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist ) |
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| 124 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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| 125 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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| 126 | |
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| 127 | sed -e "s/$PAT_RESTAR/ ln_rstart = .true./" \ |
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| 128 | -e "s/$PAT_NIT000/ nit000 = $ORCA_NIT000/" \ |
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| 129 | -e "s/$PAT_NITEND/ nitend = $ORCA_NITEND/" \ |
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| 130 | -e "s/$PAT_NRSTDT/ nrstdt = 2/" \ |
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| 131 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .true./" \ |
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| 132 | namelist > nam.tmp |
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| 133 | |
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| 134 | mv nam.tmp namelist |
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| 135 | |
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| 136 | fi |
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| 137 | |
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| 138 | ############################################################## |
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| 139 | ############################################################## |
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| 140 | ############################################################## |
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| 141 | ### Launch run |
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| 142 | ############################################################## |
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| 143 | ############################################################## |
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| 144 | ############################################################## |
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| 145 | |
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| 146 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
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| 147 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
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| 148 | chmod 777 opa_${CONF}_${RUN} |
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| 149 | chmod 777 opa_${CONF}_memo |
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| 150 | |
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| 151 | # |
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| 152 | # Profiling & Executable memory size |
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| 153 | #################################### |
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| 154 | touch memory_size.txt |
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| 155 | |
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| 156 | case ${RUN} in |
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| 157 | 'mon' ) |
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| 158 | #-T- sx8brodie export F_PROGINF=detail |
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| 159 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
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| 160 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
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| 161 | #-T- aix ;; |
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| 162 | #-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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| 163 | #-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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| 164 | #-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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| 165 | #-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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| 166 | 'mpi' ) |
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| 167 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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| 168 | #-T- aix ;; |
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| 169 | #-T- ax_mono ;; |
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| 170 | #-T- osxxlf ;; |
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| 171 | 'omp' ) |
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| 172 | #-T- sx8brodie export F_PROGINF=detail |
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| 173 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;; |
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| 174 | #-T- aix ;; |
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| 175 | #-T- ax_mono ;; |
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| 176 | #-T- osxxlf ;; |
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| 177 | esac |
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| 178 | # |
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| 179 | # >>>>>> EXECUTION < < < < |
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| 180 | ########################## |
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| 181 | |
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| 182 | case ${RUN} in |
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| 183 | 'mon' | 'omp' ) |
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| 184 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
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| 185 | 'mpi' ) |
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| 186 | #-T- sx8brodie ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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| 187 | #-T- aix ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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| 188 | #-T- osxxlf mpd& |
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| 189 | #-T- osxxlf sleep 5 |
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| 190 | #-T- osxxlf ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} |
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| 191 | #-T- osxxlf mpdallexit ;; |
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| 192 | esac |
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| 193 | |
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| 194 | ls -l |
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| 195 | # |
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| 196 | |
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| 197 | ############################################################## |
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| 198 | ############################################################## |
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| 199 | ############################################################## |
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| 200 | ### Save output files |
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| 201 | ############################################################## |
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| 202 | ############################################################## |
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| 203 | ############################################################## |
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| 204 | case ${RUN} in |
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| 205 | 'mon' | 'omp' ) |
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| 206 | liste_files='*abort* memory* namelist* perfs* solver.stat ocean.output layout* ORCA2* restart* mono*' ;; |
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| 207 | 'mpi' ) |
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| 208 | liste_files='*abort* namelist* solver.stat perfs* ocean.output* layout* ORCA2* restart* mpp*' ;; |
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| 209 | esac |
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| 210 | |
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| 211 | # Ensure that all files saved are coming from the current run |
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| 212 | ind=1 |
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| 213 | for k in $liste_files |
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| 214 | do |
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| 215 | echo $k > temp |
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| 216 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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[1054] | 217 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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[695] | 218 | kc='perf*' |
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| 219 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
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| 220 | ind=0 |
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| 221 | fi |
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| 222 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
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| 223 | done |
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| 224 | |
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| 225 | ############################################################## |
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| 226 | ############################################################## |
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| 227 | ############################################################## |
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| 228 | ### Retrieve some reference run files |
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| 229 | ############################################################## |
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| 230 | ############################################################## |
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| 231 | ############################################################## |
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| 232 | if [ ${REF_TAG} ] |
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| 233 | then |
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| 234 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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| 235 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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| 236 | for ref_file in ${LFILES} |
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| 237 | do |
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| 238 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
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| 239 | done |
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| 240 | fi |
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| 241 | |
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| 242 | ############################################################## |
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| 243 | ############################################################## |
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| 244 | ############################################################## |
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| 245 | ### Launch restart job |
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| 246 | ############################################################## |
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| 247 | ############################################################## |
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| 248 | ############################################################## |
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| 249 | if [ $type = '1_short' ] ; then |
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| 250 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
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[744] | 251 | ${LAUNCH}job_${RUN}_2_short.ksh |
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[695] | 252 | fi |
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