Changeset 10279 for NEMO/trunk/cfgs/README.rst

Timestamp:

2018-11-07T12:04:15+01:00 (6 years ago)

Author:

nicolasmartin

Message:

Various improvments for quick start guide

• implementation of Rtd theme (Read the Docs) with custom layout and style file
• add reviewed BibTeX entries for NEMO references with DOI (manuals, guide, development strategy)
• enhancement of bibliography management and configuration file for guide building
• standardisation of headings markup
• numerous edits

File:

• NEMO/trunk/cfgs/README.rst (modified) (14 diffs)

NEMO/trunk/cfgs/README.rst

@@ -1 @@
-=====================
-Build a configuration
-=====================
-
-.. include:: .global.rst
+*****************************
+Run a reference configuration
+*****************************
 
 .. contents::
@@ -9 +7 @@
    :depth: 1
       
-.. role:: underline 
-   :class: underline
-
 Official configurations
 =======================
@@ -47 +42 @@
 +----------------------+-----+-----+-----+--------+-------+-------------------------------+
 
-----------
 AGRIF_DEMO
 ----------
@@ -78 +72 @@
    0
 
------
 AMM12
 -----
@@ -101 +94 @@
 Unlike ordinary river points the Baltic inputs also include salinity and temperature data.
 
---------
 C1D_PAPA
 --------
@@ -127 +119 @@
 - surface chlorophyll file (``chlorophyll_PAPASTATION.nc``) deduced from Seawifs data.
 
---------
 GYRE_BFM
 --------
@@ -134 +125 @@
 BFM biogeochemichal model in coupled mode.
 
------------
 GYRE_PISCES
 -----------
@@ -145 +135 @@
 
 Running GYRE as a benchmark
----------------------------
+^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 This simple configuration can be used as a benchmark since it is easy to increase resolution
@@ -206 +196 @@
 http://prodn.idris.fr/thredds/catalog/ipsl_public/reee451/NEMO_OUT/GYRE/catalog.html
 
-----------------
 ORCA2_ICE_PISCES
 ----------------
@@ -293 +282 @@
   `COREII`_ forcing files extrapolated on continents
 
-----------------
 ORCA2_OFF_PISCES
 ----------------
@@ -305 +293 @@
 They are coming from a 2000 years of an ORCA2_LIM climatological run using ERA40 atmospheric forcing.
 
--------------
 ORCA2_OFF_TRC
 -------------
@@ -320 +307 @@
 ERA40 atmospheric forcing.
 
--------------
 ORCA2_SAS_ICE
 -------------
@@ -335 +321 @@
 Same input files as `ORCA2_ICE_PISCES`_ are needed plus fields from a previous ORCA2_LIM run.
 
-More informations on input and configuration files in `NEMO Reference manual`_.
-
--------
+More informations on input and configuration files in `NEMO manual`_.
+
 SPITZ12
 -------
@@ -358 +343 @@
 .. _ORCA2_ICE_v4.0.tar:           http://prodn.idris.fr/thredds/fileServer/ipsl_public/romr005/Online_forcing_archives/ORCA2_ICE_v4.0.tar
 .. _INPUTS_SAS_v4.0.tar:          http://prodn.idris.fr/thredds/fileServer/ipsl_public/romr005/Online_forcing_archives/INPUTS_SAS_v4.0.tar
-.. _NEMO Reference manual:        http://forge.ipsl.jussieu.fr/nemo/doxygen/index.html?doc=NEMO
 .. _INPUTS_C1D_PAPA_v4.0.tar:     http://prodn.idris.fr/thredds/fileServer/ipsl_public/romr005/Online_forcing_archives/INPUTS_C1D_PAPA_v4.0.tar
 .. _Reffray 2015:                 http://www.geosci-model-dev.net/8/69/2015