Changeset 11263 for NEMO/branches/2019/dev_r10984_HPC-13_IRRMANN_BDY_optimization/doc/latex/NEMO/subfiles/chap_misc.tex

Timestamp:

2019-07-12T12:47:53+02:00 (5 years ago)

Author:

smasson

Message:

dev_r10984_HPC-13 : merge with trunk@11242, see #2285

Location:

NEMO/branches/2019/dev_r10984_HPC-13_IRRMANN_BDY_optimization/doc

Files:

• . (modified) (1 prop)
• latex (modified) (1 prop)
• latex/NEMO (modified) (1 prop)
• latex/NEMO/subfiles/chap_misc.tex (modified) (11 diffs)

NEMO/branches/2019/dev_r10984_HPC-13_IRRMANN_BDY_optimization/doc/latex

@@ -1 @@
-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures

@@ -1 @@
-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures

NEMO/branches/2019/dev_r10984_HPC-13_IRRMANN_BDY_optimization/doc/latex/NEMO/subfiles/chap_misc.tex

@@ -63 +63 @@
 \begin{figure}[!tbp]
   \begin{center}
-    \includegraphics[width=0.80\textwidth]{Fig_Gibraltar}
-    \includegraphics[width=0.80\textwidth]{Fig_Gibraltar2}
+    \includegraphics[width=\textwidth]{Fig_Gibraltar}
+    \includegraphics[width=\textwidth]{Fig_Gibraltar2}
     \caption{
       \protect\label{fig:MISC_strait_hand}
@@ -84 +84 @@
 \begin{figure}[!tbp]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_closea_mask_example}
+    \includegraphics[width=\textwidth]{Fig_closea_mask_example}
     \caption{
       \protect\label{fig:closea_mask_example}
@@ -102 +102 @@
 % Closed seas
 % ================================================================
-\section{Closed seas (\protect\mdl{closea})}
+\section[Closed seas (\textit{closea.F90})]
+{Closed seas (\protect\mdl{closea})}
 \label{sec:MISC_closea}
 
@@ -122 +123 @@
 
 \begin{enumerate}
-\item{{\bf No ``closea\_mask'' field is included in domain configuration
+\item{{\bfseries No ``closea\_mask'' field is included in domain configuration
   file.} In this case the closea module does nothing.}
 
-\item{{\bf A field called closea\_mask is included in the domain
+\item{{\bfseries A field called closea\_mask is included in the domain
 configuration file and ln\_closea=.false. in namelist namcfg.} In this
 case the inland seas defined by the closea\_mask field are filled in
@@ -131 +132 @@
 closea\_mask that is nonzero is set to be a land point.}
 
-\item{{\bf A field called closea\_mask is included in the domain
+\item{{\bfseries A field called closea\_mask is included in the domain
 configuration file and ln\_closea=.true. in namelist namcfg.} Each
 inland sea or group of inland seas is set to a positive integer value
@@ -140 +141 @@
 closea\_mask is zero).}
 
-\item{{\bf Fields called closea\_mask and closea\_mask\_rnf are
+\item{{\bfseries Fields called closea\_mask and closea\_mask\_rnf are
 included in the domain configuration file and ln\_closea=.true. in
 namelist namcfg.} This option works as for option 3, except that if
@@ -154 +155 @@
 ocean.}
 
-\item{{\bf Fields called closea\_mask and closea\_mask\_emp are
+\item{{\bfseries Fields called closea\_mask and closea\_mask\_emp are
 included in the domain configuration file and ln\_closea=.true. in
 namelist namcfg.} This option works the same as option 4 except that
@@ -223 +224 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_LBC_zoom}
+    \includegraphics[width=\textwidth]{Fig_LBC_zoom}
     \caption{
       \protect\label{fig:LBC_zoom}
@@ -236 +237 @@
 % Accuracy and Reproducibility
 % ================================================================
-\section{Accuracy and reproducibility (\protect\mdl{lib\_fortran})}
+\section[Accuracy and reproducibility (\textit{lib\_fortran.F90})]
+{Accuracy and reproducibility (\protect\mdl{lib\_fortran})}
 \label{sec:MISC_fortran}
 
-\subsection{Issues with intrinsinc SIGN function (\protect\key{nosignedzero})}
+\subsection[Issues with intrinsinc SIGN function (\texttt{\textbf{key\_nosignedzero}})]
+{Issues with intrinsinc SIGN function (\protect\key{nosignedzero})}
 \label{subsec:MISC_sign}
 
@@ -272 +275 @@
 and their propagation and accumulation cause uncertainty in final simulation reproducibility on
 different numbers of processors.
-To avoid so, based on \citet{He_Ding_JSC01} review of different technics,
+To avoid so, based on \citet{he.ding_JS01} review of different technics,
 we use a so called self-compensated summation method.
 The idea is to estimate the roundoff error, store it in a buffer, and then add it back in the next addition. 
@@ -314 +317 @@
 This alternative method should give identical results to the default \textsc{ALLGATHER} method and
 is recommended for large values of \np{jpni}.
-The new method is activated by setting \np{ln\_nnogather} to be true ({\bf nammpp}).
+The new method is activated by setting \np{ln\_nnogather} to be true (\ngn{nammpp}).
 The reproducibility of results using the two methods should be confirmed for each new,
 non-reference configuration.

@@ -1 @@
-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures