Changeset 11422 for NEMO/branches/2019/fix_vvl_ticket1791/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex

Timestamp:

2019-08-08T15:40:47+02:00 (5 years ago)

Author:

jchanut

Message:

#1791, merge with trunk

Location:

NEMO/branches/2019/fix_vvl_ticket1791/doc

Files:

• . (modified) (1 prop)
• latex (modified) (1 prop)
• latex/NEMO (modified) (1 prop)
• latex/NEMO/subfiles/chap_model_basics_zstar.tex (modified) (10 diffs)

NEMO/branches/2019/fix_vvl_ticket1791/doc/latex

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-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures

@@ -1 @@
-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures

NEMO/branches/2019/fix_vvl_ticket1791/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex

@@ -18 +18 @@
 
 In that case, the free surface equation is nonlinear, and the variations of volume are fully taken into account.
-These coordinates systems is presented in a report \citep{Levier2007} available on the \NEMO web site. 
+These coordinates systems is presented in a report \citep{levier.treguier.ea_rpt07} available on the \NEMO web site. 
 
 \colorbox{yellow}{  end of to be updated}
@@ -73 +73 @@
 % Surface Pressure Gradient and Sea Surface Height
 % ================================================================
-\section{Surface pressure gradient and sea surface heigth (\protect\mdl{dynspg})}
+\section[Surface pressure gradient and sea surface heigth (\textit{dynspg.F90})]
+{Surface pressure gradient and sea surface heigth (\protect\mdl{dynspg})}
 \label{sec:DYN_hpg_spg}
 %-----------------------------------------nam_dynspg----------------------------------------------------
@@ -89 +90 @@
 which imposes a very small time step when an explicit time stepping is used.
 Two methods are proposed to allow a longer time step for the three-dimensional equations:
-the filtered free surface, which is a modification of the continuous equations %(see \autoref{eq:PE_flt}),
+the filtered free surface, which is a modification of the continuous equations %(see \autoref{eq:PE_flt?}),
 and the split-explicit free surface described below.
 The extra term introduced in the filtered method is calculated implicitly,
@@ -97 +98 @@
 % Explicit
 %-------------------------------------------------------------
-\subsubsection{Explicit (\protect\key{dynspg\_exp})}
+\subsubsection[Explicit (\texttt{\textbf{key\_dynspg\_exp}})]
+{Explicit (\protect\key{dynspg\_exp})}
 \label{subsec:DYN_spg_exp}
 
@@ -133 +135 @@
 % Split-explicit time-stepping
 %-------------------------------------------------------------
-\subsubsection{Split-explicit time-stepping (\protect\key{dynspg\_ts})}
+\subsubsection[Split-explicit time-stepping (\texttt{\textbf{key\_dynspg\_ts}})]
+{Split-explicit time-stepping (\protect\key{dynspg\_ts})}
 \label{subsec:DYN_spg_ts}
 %--------------------------------------------namdom----------------------------------------------------
@@ -139 +142 @@
 \nlst{namdom} 
 %--------------------------------------------------------------------------------------------------------------
-The split-explicit free surface formulation used in OPA follows the one proposed by \citet{Griffies2004}.
+The split-explicit free surface formulation used in OPA follows the one proposed by \citet{Griffies2004?}.
 The general idea is to solve the free surface equation with a small time step,
 while the three dimensional prognostic variables are solved with a longer time step that
@@ -147 +150 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_DYN_dynspg_ts}
+    \includegraphics[width=\textwidth]{Fig_DYN_dynspg_ts}
     \caption{
       \protect\label{fig:DYN_dynspg_ts}
       Schematic of the split-explicit time stepping scheme for the barotropic and baroclinic modes,
-      after \citet{Griffies2004}.
+      after \citet{Griffies2004?}.
       Time increases to the right.
       Baroclinic time steps are denoted by $t-\Delta t$, $t, t+\Delta t$, and $t+2\Delta t$.
@@ -171 +174 @@
 
 The split-explicit formulation has a damping effect on external gravity waves,
-which is weaker than the filtered free surface but still significant as shown by \citet{Levier2007} in
+which is weaker than the filtered free surface but still significant as shown by \citet{levier.treguier.ea_rpt07} in
 the case of an analytical barotropic Kelvin wave. 
 
@@ -291 +294 @@
 % Filtered formulation 
 %-------------------------------------------------------------
-\subsubsection{Filtered formulation (\protect\key{dynspg\_flt})}
+\subsubsection[Filtered formulation (\texttt{\textbf{key\_dynspg\_flt}})]
+{Filtered formulation (\protect\key{dynspg\_flt})}
 \label{subsec:DYN_spg_flt}
 
-The filtered formulation follows the \citet{Roullet2000} implementation.
+The filtered formulation follows the \citet{Roullet2000?} implementation.
 The extra term introduced in the equations (see {\S}I.2.2) is solved implicitly.
 The elliptic solvers available in the code are documented in \autoref{chap:MISC}.
 The amplitude of the extra term is given by the namelist variable \np{rnu}.
-The default value is 1, as recommended by \citet{Roullet2000}
+The default value is 1, as recommended by \citet{Roullet2000?}
 
 \colorbox{red}{\np{rnu}\forcode{ = 1} to be suppressed from namelist !}
@@ -305 +309 @@
 % Non-linear free surface formulation 
 %-------------------------------------------------------------
-\subsection{Non-linear free surface formulation (\protect\key{vvl})}
+\subsection[Non-linear free surface formulation (\texttt{\textbf{key\_vvl}})]
+{Non-linear free surface formulation (\protect\key{vvl})}
 \label{subsec:DYN_spg_vvl}
 
 In the non-linear free surface formulation, the variations of volume are fully taken into account.
-This option is presented in a report \citep{Levier2007} available on the NEMO web site.
+This option is presented in a report \citep{levier.treguier.ea_rpt07} available on the NEMO web site.
 The three time-stepping methods (explicit, split-explicit and filtered) are the same as in
 \autoref{DYN_spg_linear} except that the ocean depth is now time-dependent.

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-*.aux
-*.bbl
-*.blg
-*.dvi
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.log
-*.maf
-*.mtc*
-*.out
-*.pdf
-*.toc
-_minted-*
+figures