- Timestamp:
- 2020-05-15T19:41:01+02:00 (4 years ago)
- Location:
- NEMO/branches/2020/dev_r12558_HPC-08_epico_Extra_Halo
- Files:
-
- 2 edited
-
. (modified) (1 prop)
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src/OCE/IOM/iom_nf90.F90 (modified) (13 diffs)
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NEMO/branches/2020/dev_r12558_HPC-08_epico_Extra_Halo
- Property svn:externals
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old new 8 8 9 9 # SETTE 10 ^/utils/CI/sette@ HEADsette10 ^/utils/CI/sette@12931 sette
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- Property svn:externals
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NEMO/branches/2020/dev_r12558_HPC-08_epico_Extra_Halo/src/OCE/IOM/iom_nf90.F90
r12807 r12939 19 19 !!---------------------------------------------------------------------- 20 20 USE dom_oce ! ocean space and time domain 21 USE sbc_oce, ONLY: jpka,ght_abl ! abl vertical level number and height21 USE sbc_oce, ONLY: ght_abl ! abl vertical level number and height 22 22 USE lbclnk ! lateal boundary condition / mpp exchanges 23 23 USE iom_def ! iom variables definitions … … 46 46 CONTAINS 47 47 48 SUBROUTINE iom_nf90_open( cdname, kiomid, ldwrt, ldok, kdompar, kdlev )48 SUBROUTINE iom_nf90_open( cdname, kiomid, ldwrt, ldok, kdompar, kdlev, cdcomp ) 49 49 !!--------------------------------------------------------------------- 50 50 !! *** SUBROUTINE iom_open *** … … 58 58 INTEGER, DIMENSION(2,5), INTENT(in ), OPTIONAL :: kdompar ! domain parameters: 59 59 INTEGER , INTENT(in ), OPTIONAL :: kdlev ! size of the ice/abl third dimension 60 CHARACTER(len=3) , INTENT(in ), OPTIONAL :: cdcomp ! name of component calling iom_nf90_open 60 61 61 62 CHARACTER(LEN=256) :: clinfo ! info character 62 63 CHARACTER(LEN=256) :: cltmp ! temporary character 64 CHARACTER(LEN=12 ) :: clfmt ! writing format 65 CHARACTER(LEN=3 ) :: clcomp ! name of component calling iom_nf90_open 66 INTEGER :: idg ! number of digits 63 67 INTEGER :: iln ! lengths of character 64 68 INTEGER :: istop ! temporary storage of nstop … … 70 74 INTEGER :: ihdf5 ! local variable for retrieval of value for NF90_HDF5 71 75 LOGICAL :: llclobber ! local definition of ln_clobber 72 INTEGER :: ilevels ! vertical levels73 76 !--------------------------------------------------------------------- 74 77 ! … … 77 80 ! 78 81 ! !number of vertical levels 79 IF( PRESENT(kdlev) ) THEN ; ilevels = kdlev ! use input value (useful for sea-ice and abl) 80 ELSE ; ilevels = jpk ! by default jpk 82 IF( PRESENT(cdcomp) ) THEN 83 IF( .NOT. PRESENT(kdlev) ) CALL ctl_stop( 'iom_nf90_open: cdcomp and kdlev must both be present' ) 84 clcomp = cdcomp ! use input value 85 ELSE 86 clcomp = 'OCE' ! by default 81 87 ENDIF 82 88 ! … … 105 111 IF( ldwrt ) THEN !* the file should be open in write mode so we create it... 106 112 IF( jpnij > 1 ) THEN 107 WRITE(cltmp,'(a,a,i4.4,a)') cdname(1:iln-1), '_', narea-1, '.nc' 113 idg = MAX( INT(LOG10(REAL(jpnij-1,wp))) + 1, 4 ) ! how many digits to we need to write? min=4, max=9 114 WRITE(clfmt, "('(a,a,i', i1, '.', i1, ',a)')") idg, idg ! '(a,a,ix.x,a)' 115 WRITE(cltmp,clfmt) cdname(1:iln-1), '_', narea-1, '.nc' 108 116 cdname = TRIM(cltmp) 109 117 ENDIF … … 125 133 CALL iom_nf90_check(NF90_SET_FILL( if90id, NF90_NOFILL, idmy ), clinfo) 126 134 ! define dimensions 127 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'x', kdompar(1,1), idmy ), clinfo) 128 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'y', kdompar(2,1), idmy ), clinfo) 129 IF( PRESENT(kdlev) ) THEN 130 IF( kdlev == jpka ) THEN 131 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'nav_lev', kdlev, idmy ), clinfo) 132 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'time_counter', NF90_UNLIMITED, idmy ), clinfo) 133 ELSE 134 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'nav_lev', jpk, idmy ), clinfo) 135 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'time_counter', NF90_UNLIMITED, idmy ), clinfo) 136 IF( kdlev > 0 ) CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'numcat', kdlev, idmy ), clinfo) 137 ENDIF 138 ELSE 139 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'nav_lev', jpk, idmy ), clinfo) 140 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'time_counter', NF90_UNLIMITED, idmy ), clinfo) 141 ENDIF 135 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'x', kdompar(1,1), idmy ), clinfo) 136 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'y', kdompar(2,1), idmy ), clinfo) 137 SELECT CASE (clcomp) 138 CASE ('OCE') ; CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'nav_lev', jpk, idmy ), clinfo) 139 CASE ('ICE') ; CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'numcat', kdlev, idmy ), clinfo) 140 CASE ('ABL') ; CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'nav_lev', kdlev, idmy ), clinfo) 141 CASE ('SED') ; CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'numsed', kdlev, idmy ), clinfo) 142 CASE DEFAULT ; CALL ctl_stop( 'iom_nf90_open unknown component type' ) 143 END SELECT 144 CALL iom_nf90_check(NF90_DEF_DIM( if90id, 'time_counter', NF90_UNLIMITED, idmy ), clinfo) 142 145 ! global attributes 143 146 CALL iom_nf90_check(NF90_PUT_ATT( if90id, NF90_GLOBAL, 'DOMAIN_number_total' , jpnij ), clinfo) … … 165 168 ENDDO 166 169 iom_file(kiomid)%name = TRIM(cdname) 170 iom_file(kiomid)%comp = clcomp 167 171 iom_file(kiomid)%nfid = if90id 168 172 iom_file(kiomid)%nvars = 0 169 173 iom_file(kiomid)%irec = -1 ! useless for NetCDF files, used to know if the file is in define mode 170 iom_file(kiomid)%nlev = ilevels171 174 CALL iom_nf90_check(NF90_Inquire(if90id, unlimitedDimId = iom_file(kiomid)%iduld), clinfo) 172 175 IF( iom_file(kiomid)%iduld .GE. 0 ) THEN … … 529 532 INTEGER, DIMENSION(4) :: idimid ! dimensions id 530 533 CHARACTER(LEN=256) :: clinfo ! info character 531 CHARACTER(LEN= 12), DIMENSION(5) :: cltmp ! temporary character532 534 INTEGER :: if90id ! nf90 file identifier 533 INTEGER :: idmy ! dummy variable534 535 INTEGER :: itype ! variable type 535 536 INTEGER, DIMENSION(4) :: ichunksz ! NetCDF4 chunk sizes. Will be computed using … … 540 541 ! ! when appropriate (currently chunking is applied to 4d fields only) 541 542 INTEGER :: idlv ! local variable 542 INTEGER :: idim3 ! id of the third dimension543 543 !--------------------------------------------------------------------- 544 544 ! … … 554 554 ENDIF 555 555 ! define the dimension variables if it is not already done 556 ! Warning: we must use the same character length in an array constructor (at least for gcc compiler) 557 cltmp = (/ 'nav_lon ', 'nav_lat ', 'nav_lev ', 'time_counter', 'numcat ' /) 558 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(cltmp(1)), NF90_FLOAT , (/ 1, 2 /), iom_file(kiomid)%nvid(1) ), clinfo) 559 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(cltmp(2)), NF90_FLOAT , (/ 1, 2 /), iom_file(kiomid)%nvid(2) ), clinfo) 560 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(cltmp(3)), NF90_FLOAT , (/ 3 /), iom_file(kiomid)%nvid(3) ), clinfo) 561 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(cltmp(4)), NF90_DOUBLE, (/ 4 /), iom_file(kiomid)%nvid(4) ), clinfo) 556 DO jd = 1, 2 557 CALL iom_nf90_check(NF90_INQUIRE_DIMENSION(if90id,jd,iom_file(kiomid)%cn_var(jd),iom_file(kiomid)%dimsz(jd,jd)),clinfo) 558 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(iom_file(kiomid)%cn_var(jd)), NF90_FLOAT , (/ 1, 2 /), & 559 & iom_file(kiomid)%nvid(jd) ), clinfo) 560 END DO 561 iom_file(kiomid)%dimsz(2,1) = iom_file(kiomid)%dimsz(2,2) ! second dim of first variable 562 iom_file(kiomid)%dimsz(1,2) = iom_file(kiomid)%dimsz(1,1) ! first dim of second variable 563 DO jd = 3, 4 564 CALL iom_nf90_check(NF90_INQUIRE_DIMENSION(if90id,jd,iom_file(kiomid)%cn_var(jd),iom_file(kiomid)%dimsz(1,jd)), clinfo) 565 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(iom_file(kiomid)%cn_var(jd)), NF90_FLOAT , (/ jd /), & 566 & iom_file(kiomid)%nvid(jd) ), clinfo) 567 END DO 562 568 ! update informations structure related the dimension variable we just added... 563 569 iom_file(kiomid)%nvars = 4 564 570 iom_file(kiomid)%luld(1:4) = (/ .FALSE., .FALSE., .FALSE., .TRUE. /) 565 iom_file(kiomid)%cn_var(1:4) = cltmp(1:4)566 571 iom_file(kiomid)%ndims(1:4) = (/ 2, 2, 1, 1 /) 567 IF( NF90_INQ_DIMID( if90id, 'numcat', idmy ) == nf90_noerr ) THEN ! add a 5th variable corresponding to the 5th dimension568 CALL iom_nf90_check(NF90_DEF_VAR( if90id, TRIM(cltmp(5)), NF90_FLOAT , (/ 5 /), iom_file(kiomid)%nvid(5) ), clinfo)569 iom_file(kiomid)%nvars = 5570 iom_file(kiomid)%luld(5) = .FALSE.571 iom_file(kiomid)%cn_var(5) = cltmp(5)572 iom_file(kiomid)%ndims(5) = 1573 ENDIF574 ! trick: defined to 0 to say that dimension variables are defined but not yet written575 iom_file(kiomid)%dimsz(1, 1) = 0576 572 IF(lwp) WRITE(numout,*) TRIM(clinfo)//' define dimension variables done' 577 573 ENDIF … … 594 590 IF( PRESENT(pv_r0d) ) THEN ; idims = 0 595 591 ELSEIF( PRESENT(pv_r1d) ) THEN 596 IF(( SIZE(pv_r1d,1) == jpk ).OR.( SIZE(pv_r1d,1) == jpka )) THEN ; idim3 = 3 597 ELSE ; idim3 = 5 598 ENDIF 599 idims = 2 ; idimid(1:idims) = (/idim3,4/) 600 ELSEIF( PRESENT(pv_r2d) ) THEN ; idims = 3 ; idimid(1:idims) = (/1,2 ,4/) 592 idims = 2 ; idimid(1:idims) = (/3,4/) 593 ELSEIF( PRESENT(pv_r2d) ) THEN ; idims = 3 ; idimid(1:idims) = (/1,2,4/) 601 594 ELSEIF( PRESENT(pv_r3d) ) THEN 602 IF(( SIZE(pv_r3d,3) == jpk ).OR.( SIZE(pv_r3d,3) == jpka )) THEN ; idim3 = 3 603 ELSE ; idim3 = 5 604 ENDIF 605 idims = 4 ; idimid(1:idims) = (/1,2,idim3,4/) 595 idims = 4 ; idimid(1:idims) = (/1,2,3,4/) 606 596 ENDIF 607 597 IF( PRESENT(ktype) ) THEN ! variable external type … … 678 668 ! ============= 679 669 ! trick: is defined to 0 => dimension variable are defined but not yet written 680 IF( iom_file(kiomid)%dimsz(1, 1) == 0 ) THEN 681 CALL iom_nf90_check( NF90_INQ_VARID( if90id, 'nav_lon' , idmy ) , clinfo ) 682 CALL iom_nf90_check( NF90_PUT_VAR ( if90id, idmy, glamt(ix1:ix2, iy1:iy2) ), clinfo ) 683 CALL iom_nf90_check( NF90_INQ_VARID( if90id, 'nav_lat' , idmy ) , clinfo ) 684 CALL iom_nf90_check( NF90_PUT_VAR ( if90id, idmy, gphit(ix1:ix2, iy1:iy2) ), clinfo ) 685 CALL iom_nf90_check( NF90_INQ_VARID( if90id, 'nav_lev' , idmy ), clinfo ) 686 IF (iom_file(kiomid)%nlev == jpka) THEN ; CALL iom_nf90_check( NF90_PUT_VAR ( if90id, idmy, ght_abl), clinfo ) 687 ELSE ; CALL iom_nf90_check( NF90_PUT_VAR ( if90id, idmy, gdept_1d), clinfo ) 688 ENDIF 689 IF( NF90_INQ_VARID( if90id, 'numcat', idmy ) == nf90_noerr ) THEN 690 CALL iom_nf90_check( NF90_PUT_VAR ( if90id, idmy, (/ (idlv, idlv = 1,iom_file(kiomid)%nlev) /)), clinfo ) 691 ENDIF 692 ! +++ WRONG VALUE: to be improved but not really useful... 693 CALL iom_nf90_check( NF90_INQ_VARID( if90id, 'time_counter', idmy ), clinfo ) 694 CALL iom_nf90_check( NF90_PUT_VAR( if90id, idmy, kt ), clinfo ) 695 ! update the values of the variables dimensions size 696 CALL iom_nf90_check( NF90_INQUIRE_DIMENSION( if90id, 1, len = iom_file(kiomid)%dimsz(1,1) ), clinfo ) 697 CALL iom_nf90_check( NF90_INQUIRE_DIMENSION( if90id, 2, len = iom_file(kiomid)%dimsz(2,1) ), clinfo ) 698 iom_file(kiomid)%dimsz(1:2, 2) = iom_file(kiomid)%dimsz(1:2, 1) 699 CALL iom_nf90_check( NF90_INQUIRE_DIMENSION( if90id, 3, len = iom_file(kiomid)%dimsz(1,3) ), clinfo ) 700 iom_file(kiomid)%dimsz(1 , 4) = 1 ! unlimited dimension 670 IF( iom_file(kiomid)%dimsz(1, 4) == 0 ) THEN ! time_counter = 0 671 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 1, glamt(ix1:ix2, iy1:iy2) ), clinfo ) 672 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 2, gphit(ix1:ix2, iy1:iy2) ), clinfo ) 673 SELECT CASE (iom_file(kiomid)%comp) 674 CASE ('OCE') 675 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 3, gdept_1d ), clinfo ) 676 CASE ('ABL') 677 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 3, ght_abl ), clinfo ) 678 CASE DEFAULT 679 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 3, (/ (idlv, idlv = 1,iom_file(kiomid)%dimsz(1,3)) /) ), clinfo ) 680 END SELECT 681 ! "wrong" value: to be improved but not really useful... 682 CALL iom_nf90_check( NF90_PUT_VAR( if90id, 4, kt ), clinfo ) 683 ! update the size of the variable corresponding to the unlimited dimension 684 iom_file(kiomid)%dimsz(1, 4) = 1 ! so we don't enter this IF case any more... 701 685 IF(lwp) WRITE(numout,*) TRIM(clinfo)//' write dimension variables done' 702 686 ENDIF
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