Changeset 3447 for branches/2012/dev_r3438_LOCEAN15_PISLOB
- Timestamp:
- 2012-08-10T13:20:00+02:00 (12 years ago)
- Location:
- branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00
- Files:
-
- 5 edited
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iodef.xml (modified) (7 diffs)
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namelist (modified) (3 diffs)
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namelist_pisces (modified) (9 diffs)
-
namelist_top (modified) (4 diffs)
-
xmlio_server.def (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
r3295 r3447 51 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 60 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 61 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 62 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 60 <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> 61 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 62 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 63 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> 64 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> 65 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 66 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 67 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> 63 68 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 64 69 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 65 70 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 66 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" />67 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" />68 71 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 69 72 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> … … 72 75 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 73 76 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 74 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 77 <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> 78 <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> 79 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> 80 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> 81 <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> 82 <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> 83 <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> 84 <field id="pdust" description="dust concentration" unit="g/L" /> 85 <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> 86 <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> 87 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> 88 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> 89 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> 75 90 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 76 91 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> … … 83 98 <field id="Dpo2" description="Delta O2" unit="uatm" /> 84 99 <field id="Heup" description="Euphotic layer depth" unit="m" /> 85 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 86 </group> 100 <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> 101 <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> 102 </group> 87 103 88 104 <!-- scalar --> … … 107 123 108 124 <group id="5d" output_freq="432000" output_level="10" enabled=".TRUE."> <!-- 5d files --> 109 110 <file id="5d_diad_T" name="auto" description="additional pisces diagnostics" >111 <field ref="Cflx" />112 <field ref="Oflx" />113 <field ref="Dpco2" />114 <field ref="Dpo2" />115 <field ref="Heup" />116 </file>117 118 125 </group> 119 126 120 127 <group id="1m" output_freq="-1" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 121 128 122 <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > 123 <field ref="DIC" /> 124 <field ref="Alkalini" /> 125 <field ref="O2" /> 126 <field ref="NCHL" /> 127 <field ref="DCHL" /> 128 <field ref="Fer" /> 129 <field ref="NO3" /> 130 </file> 131 132 </group> 133 134 <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> 135 </group> 136 137 <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> 138 </group> 139 140 <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> 141 </group> 142 143 <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> 144 </group> 145 146 <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 147 148 <file id="1y_ptrc_T" name="auto" description="pisces sms variables" > 129 <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > 149 130 <field ref="DIC" /> 150 131 <field ref="Alkalini" /> … … 173 154 </file> 174 155 175 <file id="1 y_diad_T" name="auto" description="additional pisces diagnostics" >156 <file id="1m_diad_T" name="auto" description="additional pisces diagnostics" > 176 157 <field ref="PH" /> 177 158 <field ref="CO3" /> 178 159 <field ref="CO3sat" /> 179 <field ref="PAR" 160 <field ref="PAR" /> 180 161 <field ref="PPPHY" /> 181 162 <field ref="PPPHY2" /> … … 185 166 <field ref="PFeN" /> 186 167 <field ref="PFeD" /> 168 <field ref="xfracal" /> 187 169 <field ref="PCAL" /> 188 170 <field ref="DCAL" /> 189 <field ref="GRAZ" /> 190 <field ref="Mumax" /> 191 <field ref="MuN" /> 192 <field ref="MuD" /> 193 <field ref="MuNlight" /> 194 <field ref="MuDlight" /> 195 <field ref="LNnut" /> 196 <field ref="LDnut" /> 197 <field ref="LNFe" /> 198 <field ref="LDFe" /> 199 <field ref="LNlight" /> 200 <field ref="LDlight" /> 171 <field ref="GRAZ1" /> 172 <field ref="GRAZ2" /> 201 173 <field ref="EPC100" /> 202 174 <field ref="EPFE100" /> … … 210 182 <field ref="Heup" /> 211 183 <field ref="Irondep" /> 184 <field ref="Ironsed" /> 185 <field ref="Ironice" /> 212 186 <field ref="Nfix" /> 187 <field ref="MuN" /> 188 <field ref="MuD" /> 189 <field ref="LNnut" /> 190 <field ref="LDnut" /> 191 <field ref="LNFe" /> 192 <field ref="LDFe" /> 193 <field ref="LNlight" /> 194 <field ref="LDlight" /> 195 <field ref="pdust" /> 196 <field ref="Fe2" /> 197 <field ref="Fe3" /> 198 <field ref="FeL1" /> 199 <field ref="FeL2" /> 200 <field ref="FeP" /> 201 <field ref="TL1" /> 202 <field ref="TL2" /> 203 <field ref="Sdenit" /> 204 <field ref="Totlig" /> 213 205 </file> 214 206 </group> 207 208 <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> 209 </group> 210 211 <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> 212 </group> 213 214 <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> 215 </group> 216 217 <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> 218 </group> 219 220 <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 215 221 </group> 216 222 -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist
r3306 r3447 24 24 &namrun ! parameters of the run 25 25 !----------------------------------------------------------------------- 26 nn_no = 0 ! job number (no more used...)26 nn_no = 0 ! job number 27 27 cn_exp = "PISCES" ! experience name 28 28 nn_it000 = 1 ! first time step 29 29 nn_itend = 1460 ! last time step (std 5475) 30 nn_date0 = 010101 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or1)30 nn_date0 = 010101 ! initial calendar date yymmdd (used if nn_rstctl=1) 31 31 nn_leapy = 0 ! Leap year calendar (1) or not (0) 32 32 ln_rstart = .false. ! start from rest (F) or from a restart file (T) 33 nn_rstctl = 0 ! restart control => activated only if ln_rstart = T 34 ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist 35 ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart 36 ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart 33 nn_rstctl = 0 ! restart control = 0 nn_it000 is not compared to the restart file value 34 ! = 1 use nn_date0 in namelist (not the value in the restart file) 35 ! = 2 calendar parameters read in the restart file 37 36 cn_ocerst_in = "restart" ! suffix of ocean restart name (input) 38 37 cn_ocerst_out = "restart" ! suffix of ocean restart name (output) … … 509 508 ln_traadv_qck = .false. ! QUICKEST scheme 510 509 / 511 !---------------------------------------------------------------------------------- 512 &namtra_ldf ! lateral diffusion scheme for tracers 513 !---------------------------------------------------------------------------------- 514 ! ! Operator type: 515 ln_traldf_lap = .true. ! laplacian operator 516 ln_traldf_bilap = .false. ! bilaplacian operator 517 ! ! Direction of action: 518 ln_traldf_level = .false. ! iso-level 519 ln_traldf_hor = .false. ! horizontal (geopotential) (needs "key_ldfslp" when ln_sco=T) 520 ln_traldf_iso = .true. ! iso-neutral (needs "key_ldfslp") 521 ! ! Griffies parameters (all need "key_ldfslp") 522 ln_traldf_grif = .false. ! use griffies triads 523 ln_traldf_gdia = .false. ! output griffies eddy velocities 524 ln_triad_iso = .false. ! pure lateral mixing in ML 525 ln_botmix_grif = .false. ! lateral mixing on bottom 526 ! ! Coefficients 527 ! Eddy-induced (GM) advection always used with Griffies; otherwise needs "key_traldf_eiv" 528 ! Value rn_aeiv_0 is ignored unless = 0 with Held-Larichev spatially varying aeiv 529 ! (key_traldf_c2d & key_traldf_eiv & key_orca_r2, _r1 or _r05) 530 rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s] 510 !----------------------------------------------------------------------- 511 &namtra_ldf ! lateral diffusion scheme for tracer 512 !----------------------------------------------------------------------- 513 ! ! Type of the operator : 514 ln_traldf_lap = .true. ! laplacian operator 515 ln_traldf_bilap = .false. ! bilaplacian operator 516 ! ! Direction of action : 517 ln_traldf_level = .false. ! iso-level 518 ln_traldf_hor = .false. ! horizontal (geopotential) (require "key_ldfslp" when ln_sco=T) 519 ln_traldf_iso = .true. ! iso-neutral (require "key_ldfslp") 520 ln_traldf_grif = .false. ! griffies skew flux formulation (require "key_ldfslp") 521 ln_traldf_gdia = .false. ! griffies operator strfn diagnostics (require "key_ldfslp") 522 ln_triad_iso = .true. ! griffies operator calculates triads twice => pure lateral mixing in ML (require "key_ldfslp") 523 ln_botmix_grif = .false. ! griffies operator with lateral mixing on bottom (require "key_ldfslp") 524 ! Coefficient 531 525 rn_aht_0 = 2000. ! horizontal eddy diffusivity for tracers [m2/s] 532 526 rn_ahtb_0 = 0. ! background eddy diffusivity for ldf_iso [m2/s] 533 ! (normally=0; not used with Griffies)527 rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s] (require "key_traldf_eiv") 534 528 / 535 529 !----------------------------------------------------------------------- … … 792 786 nn_bench = 0 ! Bench mode (1/0): CAUTION use zero except for bench 793 787 ! (no physical validity of the results) 794 nn_timing = 1! timing by routine activated (=1) creates timing.output file, or not (=0)788 nn_timing = 0 ! timing by routine activated (=1) creates timing.output file, or not (=0) 795 789 / 796 790 -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_pisces
r3418 r3447 40 40 ferat3 = 10.E-6 ! Fe/C in zooplankton 41 41 wsbio2 = 30. ! Big particles sinking speed 42 niter1max = 1 ! Maximum number of iterations for POC 43 niter2max = 1 ! Maximum number of iterations for GOC 42 44 / 43 45 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 44 46 &nampislim ! parameters for nutrient limitations 45 47 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 46 conc0 = 1.e-6 ! Phosphate half saturation 47 conc1 = 8E-6 ! Phosphate half saturation for diatoms 48 conc2 = 1E-9 ! Iron half saturation for phyto 49 conc2m = 3E-9 ! Max iron half saturation for phyto 50 conc3 = 3E-9 ! Iron half saturation for diatoms 51 conc3m = 8E-9 ! Maxi iron half saturation for diatoms 48 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 49 concdno3 = 3.E-6 ! Phosphate half saturation for diatoms 50 concnnh4 = 1.E-7 ! NH4 half saturation for phyto 51 concdnh4 = 3.E-7 ! NH4 half saturation for diatoms 52 concnfer = 1.E-9 ! Iron half saturation for phyto 53 concdfer = 3.E-9 ! Iron half saturation for diatoms 54 concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria 55 concbnh4 = 2.5E-8 ! NH4 half saturation for phyto 56 concbno3 = 2.5E-7 ! Phosphate half saturation for diatoms 52 57 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 53 58 xsizephy = 1.E-6 ! Minimum size criteria for phyto 54 concnnh4 = 1.E-7 ! NH4 half saturation for phyto55 concdnh4 = 8.E-7 ! NH4 half saturationfor diatoms59 xsizern = 3.0 ! Size ratio for nanophytoplankton 60 xsizerd = 3.0 ! Size ratio for diatoms 56 61 xksi1 = 2.E-6 ! half saturation constant for Si uptake 57 xksi2 = 3.33E-6 ! half saturation constant for Si/C62 xksi2 = 20E-6 ! half saturation constant for Si/C 58 63 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 59 concfebac = 1.E-11 ! Half-saturation for Fe limitation of Bacteria60 64 qnfelim = 7.E-6 ! Optimal quota of phyto 61 65 qdfelim = 7.E-6 ! Optimal quota of diatoms 62 caco3r = 0.16 ! mean rain ratio 63 / 66 caco3r = 0.3 ! mean rain ratio 67 / 68 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 69 &nampisopt ! parameters for optics 70 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 71 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 72 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 73 sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' 74 cn_dir = './' ! root directory for the location of the dynamical files 75 ln_varpar = .true. ! boolean for PAR variable 76 parlux = 0.43 ! Fraction of shortwave as PAR 77 / 64 78 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 65 79 &nampisprod ! parameters for phytoplankton growth … … 69 83 excret = 0.05 ! excretion ratio of phytoplankton 70 84 excret2 = 0.05 ! excretion ratio of diatoms 71 ln_newprod = .true. ! Enable new parame. of production (T/F)85 ln_newprod = .true. ! Enable new parame. of production (T/F) 72 86 bresp = 0.00333 ! Basal respiration rate 73 87 chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton 74 88 chlcdm = 0.05 ! Minimum Chl/C in diatoms 75 chlcmin = 0.00 33! Maximum Chl/c in phytoplankton89 chlcmin = 0.004 ! Maximum Chl/c in phytoplankton 76 90 fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton 77 91 fecdm = 40E-6 ! Minimum Fe/C in diatoms 78 grosip = 0.15 1! mean Si/C ratio92 grosip = 0.159 ! mean Si/C ratio 79 93 / 80 94 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 81 95 &nampismort ! parameters for phytoplankton sinks 82 96 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 83 wchl = 0.001 ! quadratic mortality of phytoplankton 84 wchld = 0.02 ! maximum quadratic mortality of diatoms 97 wchl = 0.01 ! quadratic mortality of phytoplankton 98 wchld = 0.01 ! maximum quadratic mortality of diatoms 99 wchldm = 0.03 ! maximum quadratic mortality of diatoms 85 100 mprat = 0.01 ! phytoplankton mortality rate 86 101 mprat2 = 0.01 ! Diatoms mortality rate … … 90 105 &nampismes ! parameters for mesozooplankton 91 106 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 92 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts93 grazrat2 = 0.7 107 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 108 grazrat2 = 0.75 ! maximal mesozoo grazing rate 94 109 resrat2 = 0.005 ! exsudation rate of mesozooplankton 95 110 mzrat2 = 0.03 ! mesozooplankton mortality rate … … 102 117 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 103 118 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 104 xthresh2 = 2E-7! Food threshold for grazing119 xthresh2 = 3E-7 ! Food threshold for grazing 105 120 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 106 121 epsher2 = 0.3 ! Efficicency of Mesozoo growth … … 115 130 grazrat = 3.0 ! maximal zoo grazing rate 116 131 resrat = 0.03 ! exsudation rate of zooplankton 117 mzrat = 0.00 1! zooplankton mortality rate132 mzrat = 0.004 ! zooplankton mortality rate 118 133 xpref2c = 0.1 ! Microzoo preference for POM 119 134 xpref2p = 1. ! Microzoo preference for Nanophyto … … 122 137 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 123 138 xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton 124 xthresh = 2.E-7 ! Food threshold for feeding139 xthresh = 3.E-7 ! Food threshold for feeding 125 140 xkgraz = 20.E-6 ! half sturation constant for grazing 126 141 epsher = 0.3 ! Efficiency of microzoo growth … … 129 144 / 130 145 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 146 &nampisfer ! parameters for iron chemistry 147 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 148 ln_fechem = .false. ! complex iron chemistry ( T/F ) 149 ln_ligvar = .true. ! variable ligand concentration 150 xlam1 = 0.005 ! scavenging rate of Iron 151 xlamdust = 100.0 ! Scavenging rate of dust 152 ligand = 0.6E-9 ! Ligands concentration 153 / 154 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 131 155 &nampisrem ! parameters for remineralization 132 156 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 133 xremik = 0. 25 ! remineralization rate of DOC157 xremik = 0.35 ! remineralization rate of DOC 134 158 xremip = 0.025 ! remineralisation rate of POC 135 159 nitrif = 0.05 ! NH4 nitrification rate 136 160 xsirem = 0.003 ! remineralization rate of Si 137 xsiremlab = 0.025 ! fast remineralization rate of Si 138 xsilab = 0.31 ! Fraction of labile biogenic silica 139 xlam1 = 0.005 ! scavenging rate of Iron 161 xsiremlab = 0.03 ! fast remineralization rate of Si 162 xsilab = 0.5 ! Fraction of labile biogenic silica 140 163 oxymin = 1.E-6 ! Half-saturation constant for anoxia 141 ligand = 0.6E-9 ! Ligands concentration142 164 / 143 165 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 148 170 / 149 171 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 150 &nampiss ed! parameters for inputs deposition172 &nampissbc ! parameters for inputs deposition 151 173 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 152 174 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 153 175 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 154 176 sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' 155 sn_riverdic = 'river.orca' , -12 , 'riverdic' , .false. , .true. , 'yearly' , '' , '' 156 sn_riverdoc = 'river.orca' , -12 , 'riverdoc' , .false. , .true. , 'yearly' , '' , '' 177 sn_solub = 'solubility.orca' , -12 , 'solubility1' , .false. , .true. , 'yearly' , '' , '' 178 sn_riverdic = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , '' 179 sn_riverdoc = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , '' 180 sn_riverdin = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , '' 181 sn_riverdon = 'river.orca' , 120 , 'riverdon' , .true. , .true. , 'yearly' , '' , '' 182 sn_riverdip = 'river.orca' , 120 , 'riverdip' , .true. , .true. , 'yearly' , '' , '' 183 sn_riverdop = 'river.orca' , 120 , 'riverdop' , .true. , .true. , 'yearly' , '' , '' 184 sn_riverdsi = 'river.orca' , 120 , 'riverdsi' , .true. , .true. , 'yearly' , '' , '' 157 185 sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' 158 186 sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , '' 187 sn_hydrofe = 'hydrofe' , -12 , 'epsdb' , .false. , .true. , 'yearly' , '' , '' 159 188 ! 160 189 cn_dir = './' ! root directory for the location of the dynamical files 161 190 ln_dust = .true. ! boolean for dust input from the atmosphere 162 ln_river = .false. ! boolean for river input of nutrients 191 ln_solub = .true. ! boolean for variable solubility of atm. Iron 192 ln_river = .true. ! boolean for river input of nutrients 163 193 ln_ndepo = .true. ! boolean for atmospheric deposition of N 164 194 ln_ironsed = .true. ! boolean for Fe input from sediments 195 ln_ironice = .true. ! boolean for Fe input from sea ice 196 ln_hydrofe = .false. ! boolean for from hydrothermal vents 165 197 sedfeinput = 1E-9 ! Coastal release of Iron 166 198 dustsolub = 0.02 ! Solubility of the dust 167 wdust = 2.0 ! Dust sinking speed 199 wdust = 2.0 ! Dust sinking speed 200 icefeinput = 10E-9 ! Iron concentration in sea ice 168 201 nitrfix = 1E-7 ! Nitrogen fixation rate 169 202 diazolight = 50. ! Diazotrophs sensitivity to light (W/m2) 170 203 concfediaz = 1.E-10 ! Diazotrophs half-saturation Cste for Iron 204 hratio = 9.E-5 ! Fe to 3He ratio assumed for vent iron supply 171 205 / 172 206 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 175 209 xkr_eta = 1.17 ! Sinking exponent 176 210 xkr_zeta = 2.28 ! N content exponent 211 xkr_ncontent = 5.7E-6 ! N content factor 177 212 xkr_mass_min = 0.0002 ! Minimum mass for Aggregates 178 213 xkr_mass_max = 1. ! Maximum mass for Aggregates -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top
r3319 r3447 16 16 ln_rsttr = .false. ! start from a restart file (T) or not (F) 17 17 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value 18 19 18 ! = 1 do not use the value in the restart file 19 ! = 2 calendar parameters read in the restart file 20 20 cn_trcrst_in = "restart_trc" ! suffix of pass. sn_tracer restart name (input) 21 21 cn_trcrst_out = "restart_trc" ! suffix of pass. sn_tracer restart name (output) 22 ln_trcdta = .true. 22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ln_trcdmp = .false. ! add a damping termn (T) or not (F) 24 24 ! 25 ! ! name ! title of the field ! initial data! initial data ! save !26 ! ! ! ! units! from file ! or not !27 ! ! ! !! or not ! !25 ! ! name ! title of the field ! units ! initial data ! save ! 26 ! ! ! ! ! from file ! or not ! 27 ! ! ! ! ! or not ! ! 28 28 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 29 29 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 35 35 sn_tracer(8) = 'PHY ' , 'Nanophytoplankton Concentration ', 'mol-C/L' , .false. , .true. 36 36 sn_tracer(9) = 'ZOO ' , 'Microzooplankton Concentration ', 'mol-C/L' , .false. , .true. 37 sn_tracer(10) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , . true., .true.37 sn_tracer(10) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 39 39 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. … … 59 59 sn_trcdta(1) = 'data_DIC_nomask' , -12 , 'DIC' , .false. , .true. , 'yearly' , '' , '' 60 60 sn_trcdta(2) = 'data_Alkalini_nomask' , -12 , 'Alkalini', .false. , .true. , 'yearly' , '' , '' 61 sn_trcdta(3) = 'data_O2_nomask' , -1 , 'O2' , .true. , .true. , 'yearly' , '' , '' 62 sn_trcdta(5) = 'data_PO4_nomask' , -1 , 'PO4' , .true. , .true. , 'yearly' , '' , '' 63 sn_trcdta(7) = 'data_Si_nomask' , -1 , 'Si' , .true. , .true. , 'yearly' , '' , '' 64 sn_trcdta(10) = 'data_DOC_nomask' , -12 , 'DOC' , .false. , .true. , 'yearly' , '' , '' 61 sn_trcdta(3) = 'data_1m_O2_nomask' , -1 , 'O2' , .true. , .true. , 'yearly' , '' , '' 62 sn_trcdta(5) = 'data_1m_PO4_nomask' , -1 , 'PO4' , .true. , .true. , 'yearly' , '' , '' 63 sn_trcdta(7) = 'data_1m_Si_nomask' , -1 , 'Si' , .true. , .true. , 'yearly' , '' , '' 65 64 sn_trcdta(14) = 'data_Fer_nomask' , -12 , 'Fer' , .false. , .true. , 'yearly' , '' , '' 66 sn_trcdta(23) = 'data_ NO3_nomask', -1 , 'NO3' , .true. , .true. , 'yearly' , '' , ''65 sn_trcdta(23) = 'data_1m_NO3_nomask' , -1 , 'NO3' , .true. , .true. , 'yearly' , '' , '' 67 66 ! 68 67 cn_dir = './' ! root directory for the location of the data files … … 72 71 rn_trfac(5) = 122.0e-06 ! - - - - 73 72 rn_trfac(7) = 1.0e-06 ! - - - - 74 rn_trfac(10) = 1.0 ! - - - -75 73 rn_trfac(14) = 1.0 ! - - - - 76 74 rn_trfac(23) = 7.6e-06 ! - - - - -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/xmlio_server.def
r2528 r3447 30 30 ! setting nn_nchunks_k = jpk will give a chunk size of 1 in the vertical which 31 31 ! is optimal for postprocessing which works exclusively with horizontal slabs 32 ln_nc4zip = . TRUE. ! (T) use netcdf4 chunking and compression32 ln_nc4zip = .false. ! (T) use netcdf4 chunking and compression 33 33 ! (F) ignore chunking information and produce netcdf3-compatible files 34 34 /
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