- Timestamp:
- 2013-11-04T12:51:55+01:00 (10 years ago)
- File:
-
- 1 edited
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branches/2013/dev_LOCEAN_2013/NEMOGCM/SETTE/all_functions.sh
r3294 r4147 111 111 if [ ${#VAR_NAME} -eq 0 ] 112 112 then 113 echo "doing \"set_namelist $@\". " 114 echo "variable: \"$2\" is empty" 115 echo "control that variable $2 is in \"${EXE_DIR}/$1\" " 116 echo "exit" 117 echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette 118 echo "....." >> ${SETTE_DIR}/output.sette 119 exit 1 113 echo "doing \"set_namelist $@\". " >> ${SETTE_DIR}/output.sette 114 echo "variable: \"$2\" not found in \"${EXE_DIR}/$1\" " >> ${SETTE_DIR}/output.sette 115 NAMREF=$( basename $1 _cfg )_ref 116 echo "doing more : search in ${EXE_DIR}/$NAMREF " >> ${SETTE_DIR}/output.sette 117 VAR_NAME=$( supergrep $2 ${EXE_DIR}/$NAMREF ) 118 if [ ${#VAR_NAME} -eq 0 ] 119 then 120 echo " variable $VAR_NAME not found in ${EXE_DIR}/$1 nor in ${EXE_DIR}/$NAMREF " 121 echo " check your variable name " 122 echo "exit" 123 echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette 124 echo "....." >> ${SETTE_DIR}/output.sette 125 exit 1 126 fi 127 LINEVAR=$( grep -s -n "$VAR_NAME" ${EXE_DIR}/$NAMREF | awk -F: '{ { print $1} }' ) 128 echo " $VAR_NAME found in ${EXE_DIR}/$NAMREF at line $LINEVAR " >> ${SETTE_DIR}/output.sette 129 # search for namelist group name 130 NAMGRP=$( head -n$LINEVAR ${EXE_DIR}/$NAMREF | grep --line-buffered "^&nam" | tail -1 | awk -F" " '{ { print $1} }' ) 131 echo " variable $VAR_NAME will be added in $NAMGRP namelist-group of namelist file ${EXE_DIR}/$1 " >> ${SETTE_DIR}/output.sette 132 # Add $VARNAME in namelist file ${EXE_DIR}/$1 in namelist group $NAMGRP 133 # on mac osx, replace sed --posix by gsed (available with mac port) 134 set -vx 135 sed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp || gsed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp 136 set +vx 137 # if file not empty replace ${EXE_DIR}/$1 138 if [ -s ${EXE_DIR}/$1.tmp ] ; then 139 mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 140 else 141 echo "file ${EXE_DIR}/$1.tmp is empty. sed command went wrong "; exit 200 142 fi 120 143 fi 144 121 145 sed -e "s:${VAR_NAME}.*:${VAR_NAME}:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp 122 146 mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 … … 151 175 ################################################################ 152 176 # SMALL DEBUG 177 if [ ! -r ${EXE_DIR}/ocean.output ] 178 then 179 grep "E R R O R" ${EXE_DIR}/ocean.output && echo "Some ERRORS at execution time, see ${EXE_DIR}/ocean.output" 180 exit 2 181 fi 182 153 183 if [ ! -r ${EXE_DIR}/time.step ] 154 184 then … … 158 188 else 159 189 echo "file time.step exists" >> ${SETTE_DIR}/output.sette 160 echo "ok model run" >> ${SETTE_DIR}/output.sette 161 fi 190 echo "execution of model time step loop started" >> ${SETTE_DIR}/output.sette 191 fi 192 162 193 ################################################################ 163 194 … … 191 222 echo "saving ocean & ice output, solver.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette 192 223 echo " " >> ${SETTE_DIR}/output.sette 193 [ -f ${EXE_DIR}/*ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. 194 [ -f ${EXE_DIR}/*solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. 195 [ -f ${EXE_DIR}/*tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. 224 [ -f ${EXE_DIR}/ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. 225 [ -f ${EXE_DIR}/solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. 226 [ -f ${EXE_DIR}/output.namelist.dyn ] && cp ${EXE_DIR}/*output.nam* ${NEMO_VALID}/. 227 [ -f ${EXE_DIR}/tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. 228 196 229 if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then 197 230 echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette
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