- Timestamp:
- 2015-10-16T16:38:37+02:00 (9 years ago)
- File:
-
- 1 edited
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branches/2015/dev_r5092_CNRS18_TRUST/NEMOGCM/TRUST/config/arch_template.cfg
r5788 r5799 1 ## HPCconfiguration template1 ## (Super)Computer configuration template 2 2 ##--------------------------------------------------- 3 3 4 4 ## Copy to root (./config) and rename it by keeping '.cfg' extension, then fill in according to your (super)computer 5 ## Will be called by its name without the extension 5 ## Rules for completion: 6 ## Undefined variables (=) are mandatory 7 ## Void " " (='') " " optional 8 ## Look into other configuration file for examples 9 ## It will be called by its name without the extension 6 10 7 11 8 ## Mandatory12 ## Default settings 9 13 ##--------------------------------------------------- 10 14 11 ## (Super)Computer environment 12 ARCH_ENV='' ## *.env, *.path or modulesfile to source (let void if $PATH has already been setted) 13 ## ex: "${DIR_XIOS}/arch/arch-${TRUS_HPCC}.env" 15 ## (Super)Computer environment (can be void if $PATH is already setted) 16 ## If `module` command is available, arch-${TRUS_HPCC}.env will be sourced. 17 ## If not (scheduled jobs by `cron`/`at` commands), it will be arch-${TRUS_HPCC}.path or any file given 18 TRUS_ENVI=${TRUS_XIOS}/arch/arch-${TRUS_HPCC} # ${TRUS_XIOS} is defined from user configuration file 14 19 15 ## Job commands (use with `eval ${JOB_....}`), may need to use "\${JOB_ID}" variable as the job ID returned from submission: 16 JOB_SUBM='' ## Submit a job and get his ID in return (will became ${JOB_ID}) 17 ## ex: `llsubmit ${TRUS_DIR}/batch/${TRUS_HPCC}.sh | grep -oe '\<[0-9]*\>'`, use absolute path 18 JOB_STAT='' ## Test state of the submitted job (true -> pending/running or false -> completed/crashed) 19 ## ex: "llq | grep \${JOB_ID}" 20 JOB_KILL='' ## Kill the submitted job 21 ## ex: "llcancel \${JOB_ID}" 20 ## Number of compiling processes 21 [ -z "${TRUS_NPRO}" ] && TRUS_NPRO=1 22 22 23 ## Compiling (number of tasks) and computation (timeout in s) 24 [ -z "${TRUS_NPRO}" ] && TRUS_NPRO='1' 25 [ -z "${TIMEOUT}" ] && TIMEOUT='10800' 26 27 ## $CDO command to compare 2 datasets in argument 28 CDOD='' ## Essential to check a difference between NetCDF restart files 23 ## Command to compare 2 netCDF restart files in argument (think to load software in $PATH by any way) 24 TRUS_CDOD='cdo diffn' 29 25 30 26 31 ## Interest when monitoring HPC center27 ## Job commands 32 28 ##--------------------------------------------------- 33 29 34 ## Software releases (string pattern to match just before the number in $LOADEDMODULES or $PATH): 35 STR_CDOD='' ## CDO (Climate Data Operators) 36 ## ex: 'cdo'||'nco'||... 37 STR_LMPI='' ## MPI libraries 38 ## ex: 'openmpi'||'mpich'||... 39 STR_NCDF='' ## NetCDF " " 40 ## ex: 'netcdf'||'netcdf-parallel'||... 30 ## Use with `eval ${JOB_....}` because they will certainly need to have job ID as argument ("\${JOB_ID}") 31 ## It will be taken on the fly from standard output returned at the submission of the job 41 32 42 ## Fortran compiler version (use with `$COMPILER --version`) 43 CMPF='' ## ex: 'ifort'||'gfortran'||'pgfortran'||... 33 TRUS_JSUB= ## Submit a job and get his ID in return (assigned to ${JOB_ID}). Use absolute path, 34 ## ./batch folder has been created to contain your submission script but it won't be copied into ${TRUS_TEST} 35 ## ex: `llsubmit ${TRUS_DIRE}/batch/${TRUS_HPCC}.sh | grep -oe '\<[0-9]*\>'` 36 TRUS_JSTA= ## Test state of the submitted job (true -> pending/running or false -> completed/crashed) 37 ## ex: "llq | grep \${JOB_ID}" 38 TRUS_JKIL= ## Kill the submitted job 39 ## ex: "llcancel \${JOB_ID}" 40 41 ## Computational performances of finished job 42 TRUS_JTIM='' ## Get CPU elapsed time 43 ## ex: `grep IdrisMemMPI NEMO_CI_\${JOB_ID} | cut -d, -f1 | awk '{print \$(NF-1),\$NF}'` 44 TRUS_JPME='' ## Get max physical memory 45 ## ex: `grep IdrisMemMPI NEMO_CI_\${JOB_ID} | cut -d, -f3 | awk '{print \$3 ,\$4 }'` 46 TRUS_JVME='' ## Get " " virtual "" 47 48 ## Get job informations to fill in a logfile during computation 49 TRUS_JINF='' ## ex: "llq -x \${JOB_ID}" 44 50 45 51 46 ## Optional (can be void if no alternative or need)52 ## Available softwares/librairies 47 53 ##--------------------------------------------------- 48 54 49 ## Computational performances of finished job (use with `eval ${JOB_....}`) 50 JOB_INFO='' ## Get job informations to fill in a logfile during computation 51 ## ex: "llq -x \${JOB_ID}" 52 JOB_TIME='' ## Get CPU elapsed time 53 ## ex: `grep IdrisMemMPI NEMO_CI_\${JOB_ID} | cut -d, -f1 | awk '{print \$(NF-1),\$NF}'` 54 JOB_PMEM='' ## Get max physical memory 55 ## ex: `grep IdrisMemMPI NEMO_CI_\${JOB_ID} | cut -d, -f3 | awk '{print \$3,\$4}'` 56 JOB_VMEM='' ## Get " " virtual "" 55 ## Fortran compiler version (use with `${TRUS_CMPF} --version`) 56 TRUS_CMPF='' ## ex: 'ifort'|'gfortran'|'pgfortran'|... 57 58 ## Software releases (string pattern to match just before the number in $PATH): 59 TRUS_CDOR='' ## CDO (Climate Data Operators) 60 ## ex: 'cdo'|'nco'|... 61 TRUS_MPIR='' ## MPI libraries 62 ## ex: 'openmpi'|'mpich'|... 63 TRUS_CDFR='' ## NetCDF " " 64 ## ex: 'netcdf'|'netcdf-parallel'|... 65 66 67 ## Personal settings 68 ##--------------------------------------------------- 69 70 ## Timeout for computation (s) 71 [ -z "${TRUS_TOUT}" ] && TRUS_TOUT=
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