- Timestamp:
- 2017-02-03T14:24:58+01:00 (7 years ago)
- Location:
- branches/2016/dev_merge_2016/NEMOGCM/CONFIG/ORCA2_LIM3_PISCES/EXP00
- Files:
-
- 6 added
- 3 deleted
- 1 edited
-
ForXIOS2 (deleted)
-
context_nemo.xml (added)
-
domain_def.xml (deleted)
-
domain_def_nemo.xml (added)
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field_def.xml (deleted)
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field_def_nemo-lim.xml (added)
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field_def_nemo-opa.xml (added)
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field_def_nemo-pisces.xml (added)
-
file_def_nemo.xml (added)
-
iodef.xml (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
-
branches/2016/dev_merge_2016/NEMOGCM/CONFIG/ORCA2_LIM3_PISCES/EXP00/iodef.xml
r7631 r7635 1 1 <?xml version="1.0"?> 2 <simulation> 2 <simulation> 3 3 4 <context id="nemo" time_origin="1950-01-01 00:00:00" > 5 6 <!-- $id$ --> 7 8 <!-- 9 ============================================================================================================ 10 = definition of all existing variables = 11 = DO NOT CHANGE = 12 ============================================================================================================ 13 --> 14 <field_definition src="./field_def.xml"/> 15 <!-- 16 ============================================================================================================ 17 = output files definition = 18 = Define your own files = 19 = put the variables you want... = 20 ============================================================================================================ 21 --> 22 23 <file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4"> 24 25 <file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files --> 4 <!-- ============================================================================================ --> 5 <!-- XIOS context --> 6 <!-- ============================================================================================ --> 26 7 27 <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files --> 28 29 <file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files --> 30 31 <file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files --> 32 33 <file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files --> 34 35 <file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files --> 36 37 <file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."/> <!-- 1d files --> 38 39 <file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files --> 40 41 <file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files --> 42 43 <file id="file1" name_suffix="_grid_T" description="ocean T grid variables" > 44 <field field_ref="e3t" /> 45 <field field_ref="toce" name="thetao" operation="instant" freq_op="5d" > @toce_e3t / @e3t </field> 46 <field field_ref="soce" name="so" operation="instant" freq_op="5d" > @soce_e3t / @e3t </field> 47 <field field_ref="sst" name="tos" /> 48 <field field_ref="sss" name="sos" /> 49 <field field_ref="ssh" name="zos" /> 50 <field field_ref="sst" name="tosstd" long_name="sea surface temperature standard deviation" operation="instant" freq_op="5d" > sqrt( @sst2 - @sst * @sst ) </field> 51 <field field_ref="ssh" name="zosstd" long_name="sea surface height above geoid standard deviation" operation="instant" freq_op="5d" > sqrt( @ssh2 - @ssh * @ssh ) </field> 52 <field field_ref="sst" name="sstdcy" long_name="amplitude of sst diurnal cycle" operation="average" freq_op="1d" > @sstmax - @sstmin </field> 53 <field field_ref="mldkz5" /> 54 <field field_ref="mldr10_1" /> 55 <field field_ref="mldr10_1" name="mldr10_1dcy" long_name="amplitude of mldr10_1 diurnal cycle" operation="average" freq_op="1d" > @mldr10_1max - @mldr10_1min </field> 56 <field field_ref="sbt" /> 57 <field field_ref="heatc" name="heatc" /> 58 <field field_ref="saltc" name="saltc" /> 59 </file> 60 61 <file id="file2" name_suffix="_SBC" description="surface fluxes variables" > <!-- time step automaticaly defined based on nn_fsbc --> 62 <field field_ref="empmr" name="wfo" /> 63 <field field_ref="qsr_oce" name="qsr_oce" /> 64 <field field_ref="qns_oce" name="qns_oce" /> 65 <field field_ref="qt_oce" name="qt_oce" /> 66 <field field_ref="qsr_ice" name="qsr_ice" /> 67 <field field_ref="qns_ice" name="qns_ice" /> 68 <field field_ref="qtr_ice" name="qtr_ice" /> 69 <field field_ref="qt_ice" name="qt_ice" /> 70 <field field_ref="saltflx" name="sfx" /> 71 <field field_ref="taum" name="taum" /> 72 <field field_ref="wspd" name="windsp" /> 73 <field field_ref="precip" name="precip" /> 74 <!-- ice and snow --> 75 <field field_ref="snowpre" /> 76 <field field_ref="utau_ice" name="utau_ice" /> 77 <field field_ref="vtau_ice" name="vtau_ice" /> 78 </file> 79 80 <file id="file3" name_suffix="_grid_U" description="ocean U grid variables" > 81 <field field_ref="e3u" /> 82 <field field_ref="ssu" name="uos" /> 83 <field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field> 84 <field field_ref="utau" name="tauuo" /> 85 <!-- available with key_diaar5 --> 86 <field field_ref="u_masstr" name="vozomatr" /> 87 <field field_ref="u_heattr" name="sozohetr" /> 88 <field field_ref="u_salttr" name="sozosatr" /> 89 </file> 90 91 <file id="file4" name_suffix="_grid_V" description="ocean V grid variables" > 92 <field field_ref="e3v" /> 93 <field field_ref="ssv" name="vos" /> 94 <field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field> 95 <field field_ref="vtau" name="tauvo" /> 96 <!-- available with key_diaar5 --> 97 <field field_ref="v_masstr" name="vomematr" /> 98 <field field_ref="v_heattr" name="somehetr" /> 99 <field field_ref="v_salttr" name="somesatr" /> 100 </file> 101 102 <file id="file5" name_suffix="_grid_W" description="ocean W grid variables" > 103 <field field_ref="e3w" /> 104 <field field_ref="woce" name="wo" /> 105 <field field_ref="avt" name="difvho" /> 106 <field field_ref="w_masstr" name="vovematr" /> 107 </file> 108 109 <file id="file6" name_suffix="_icemod" description="ice variables" enabled=".true." > 110 <field field_ref="snowthic_cea" name="snthic" /> 111 <field field_ref="icethic_cea" name="sithic" /> 112 <field field_ref="icevolu" name="sivolu" /> 113 <field field_ref="snowvol" name="snvolu" /> 114 <field field_ref="iceconc" name="siconc" /> 115 116 <field field_ref="vfxbog" name="vfxbog" /> 117 <field field_ref="vfxdyn" name="vfxdyn" /> 118 <field field_ref="vfxopw" name="vfxopw" /> 119 <field field_ref="vfxsni" name="vfxsni" /> 120 <field field_ref="vfxsum" name="vfxsum" /> 121 <field field_ref="vfxbom" name="vfxbom" /> 122 <field field_ref="vfxres" name="vfxres" /> 123 <field field_ref="vfxice" name="vfxice" /> 124 <field field_ref="vfxsnw" name="vfxsnw" /> 125 <field field_ref="vfxsub" name="vfxsub" /> 126 <field field_ref="vfxspr" name="vfxspr" /> 127 128 <field field_ref="icetrp" name="sivtrp" /> 129 <field field_ref="snwtrp" name="snvtrp" /> 130 <field field_ref="saltrp" name="saltrp" /> 131 <field field_ref="deitrp" name="deitrp" /> 132 <field field_ref="destrp" name="destrp" /> 133 134 <field field_ref="sfxbri" name="sfxbri" /> 135 <field field_ref="sfxdyn" name="sfxdyn" /> 136 <field field_ref="sfxres" name="sfxres" /> 137 <field field_ref="sfxbog" name="sfxbog" /> 138 <field field_ref="sfxbom" name="sfxbom" /> 139 <field field_ref="sfxsum" name="sfxsum" /> 140 <field field_ref="sfxsni" name="sfxsni" /> 141 <field field_ref="sfxopw" name="sfxopw" /> 142 <field field_ref="sfx" name="sfx" /> 143 144 <field field_ref="hfxsum" name="hfxsum" /> 145 <field field_ref="hfxbom" name="hfxbom" /> 146 <field field_ref="hfxbog" name="hfxbog" /> 147 <field field_ref="hfxdif" name="hfxdif" /> 148 <field field_ref="hfxopw" name="hfxopw" /> 149 <field field_ref="hfxout" name="hfxout" /> 150 <field field_ref="hfxin" name="hfxin" /> 151 <field field_ref="hfxsnw" name="hfxsnw" /> 152 <field field_ref="hfxerr" name="hfxerr" /> 153 <field field_ref="hfxerr_rem" name="hfxerr_rem" /> 154 155 <!-- ice-ocean heat flux from mass exchange --> 156 <field field_ref="hfxdyn" name="hfxdyn" /> 157 <field field_ref="hfxres" name="hfxres" /> 158 <field field_ref="hfxthd" name="hfxthd" /> 159 <!-- ice-atm. heat flux from mass exchange --> 160 <field field_ref="hfxsub" name="hfxsub" /> 161 <field field_ref="hfxspr" name="hfxspr" /> 162 163 <!-- diags --> 164 <field field_ref="hfxdhc" name="hfxdhc" /> 165 <field field_ref="hfxtur" name="hfxtur" /> 166 167 <field field_ref="isst" name="sst" /> 168 <field field_ref="isss" name="sss" /> 169 <field field_ref="micesalt" name="sisali" /> 170 <field field_ref="micet" name="sitemp" /> 171 <field field_ref="icest" name="sistem" /> 172 <field field_ref="icehc" name="siheco" /> 173 <field field_ref="isnowhc" name="snheco" /> 174 <field field_ref="miceage" name="siages" /> 175 176 <field field_ref="uice_ipa" name="sivelu" /> 177 <field field_ref="vice_ipa" name="sivelv" /> 178 <field field_ref="icevel" name="sivelo" /> 179 <field field_ref="idive" name="sidive" /> 180 <field field_ref="ishear" name="sishea" /> 181 <field field_ref="icestr" name="sistre" /> 182 183 <field field_ref="ibrinv" name="sibrin" /> 184 <field field_ref="icecolf" name="sicolf" /> 185 186 <field field_ref="iceage_cat" name="siagecat" /> 187 <field field_ref="iceconc_cat" name="siconcat" /> 188 <field field_ref="icethic_cat" name="sithicat" /> 189 <field field_ref="snowthic_cat" name="snthicat" /> 190 <field field_ref="salinity_cat" name="salincat" /> 191 <field field_ref="brinevol_cat" name="sibricat" /> 192 <field field_ref="icetemp_cat" name="sitemcat" /> 193 <field field_ref="snwtemp_cat" name="sntemcat" /> 194 195 </file> 196 197 <file id="file7" name_suffix="_scalar" description="scalar variables" enabled=".true." > 198 <field field_ref="voltot" name="scvoltot" /> 199 <field field_ref="sshtot" name="scsshtot" /> 200 <field field_ref="sshsteric" name="scsshste" /> 201 <field field_ref="sshthster" name="scsshtst" /> 202 <field field_ref="masstot" name="scmastot" /> 203 <field field_ref="temptot" name="sctemtot" /> 204 <field field_ref="saltot" name="scsaltot" /> 205 206 <field field_ref="bgtemper" name="bgtemper" /> 207 <field field_ref="bgsaline" name="bgsaline" /> 208 <field field_ref="bgheatco" name="bgheatco" /> 209 <field field_ref="bgsaltco" name="bgsaltco" /> 210 <field field_ref="bgvolssh" name="bgvolssh" /> 211 <field field_ref="bgvole3t" name="bgvole3t" /> 212 <field field_ref="bgfrcvol" name="bgfrcvol" /> 213 <field field_ref="bgfrctem" name="bgfrctem" /> 214 <field field_ref="bgfrcsal" name="bgfrcsal" /> 215 </file> 216 217 <file id="file8" name_suffix="_SBC_scalar" description="scalar variables" enabled=".true." > 218 <!-- global contents --> 219 <field field_ref="ibgvol_tot" name="ibgvol_tot" /> 220 <field field_ref="sbgvol_tot" name="sbgvol_tot" /> 221 <field field_ref="ibgarea_tot" name="ibgarea_tot" /> 222 <field field_ref="ibgsalt_tot" name="ibgsalt_tot" /> 223 <field field_ref="ibgheat_tot" name="ibgheat_tot" /> 224 <field field_ref="sbgheat_tot" name="sbgheat_tot" /> 225 226 <!-- global drifts (conservation checks) --> 227 <field field_ref="ibgvolume" name="ibgvolume" /> 228 <field field_ref="ibgsaltco" name="ibgsaltco" /> 229 <field field_ref="ibgheatco" name="ibgheatco" /> 230 <field field_ref="ibgheatfx" name="ibgheatfx" /> 231 232 <!-- global forcings --> 233 <field field_ref="ibgfrcvoltop" name="ibgfrcvoltop" /> 234 <field field_ref="ibgfrcvolbot" name="ibgfrcvolbot" /> 235 <field field_ref="ibgfrctemtop" name="ibgfrctemtop" /> 236 <field field_ref="ibgfrctembot" name="ibgfrctembot" /> 237 <field field_ref="ibgfrcsal" name="ibgfrcsal" /> 238 <field field_ref="ibgfrchfxtop" name="ibgfrchfxtop" /> 239 <field field_ref="ibgfrchfxbot" name="ibgfrchfxbot" /> 240 </file> 241 242 <file id="file9" name_suffix="_bioscalar" description="pisces sms variables" > 243 <field field_ref="tdenit" name="tdenit" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field> 244 <field field_ref="tnfix" name="tnfix" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field> 245 <field field_ref="tcflx" name="tcflx" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field> 246 <field field_ref="tcflxcum" name="tcflxcum" unit="PgC" operation="instant" > tcflxcum * -1. * 12. / 1e15 </field> 247 <field field_ref="tcexp" name="tcexp" unit="PgC/yr" operation="instant" > tcexp * 12. * 86400. * 365. / 1e15 </field> 248 <field field_ref="tintpp" name="tintpp" unit="PgC/yr" operation="instant" > tintpp * 12. * 86400. * 365. / 1e15 </field> 249 <field field_ref="pno3tot" name="pno3tot" unit="umolN" > pno3tot * 16. / 122. * 1e6 </field> 250 <field field_ref="ppo4tot" name="ppo4tot" unit="umolP" > ppo4tot * 1. / 122. * 1e6 </field> 251 <field field_ref="psiltot" name="psiltot" unit="umolC" > psiltot * 1e6 </field> 252 <field field_ref="palktot" name="palktot" unit="umolC" > palktot * 1e6 </field> 253 <field field_ref="pfertot" name="pfertot" unit="nmolFe" > pfertot * 1e9 </field> 254 </file> 255 <!-- 256 <file id="file20" name_suffix="_Tides" description="tidal harmonics" > 257 <field field_ref="M2x" name="M2x" long_name="M2 Elevation harmonic real part" /> 258 <field field_ref="M2y" name="M2y" long_name="M2 Elevation harmonic imaginary part" /> 259 <field field_ref="M2x_u" name="M2x_u" long_name="M2 current barotrope along i-axis harmonic real part " /> 260 <field field_ref="M2y_u" name="M2y_u" long_name="M2 current barotrope along i-axis harmonic imaginary part " /> 261 <field field_ref="M2x_v" name="M2x_v" long_name="M2 current barotrope along j-axis harmonic real part " /> 262 <field field_ref="M2y_v" name="M2y_v" long_name="M2 current barotrope along j-axis harmonic imaginary part " /> 263 </file> 264 --> 265 266 </file_group> 267 268 <file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 269 270 <file id="file10" name_suffix="_ptrc_T" description="pisces sms variables" > 271 <field field_ref="DIC" /> 272 <field field_ref="Alkalini" /> 273 <field field_ref="O2" /> 274 <field field_ref="PO4" /> 275 <field field_ref="Si" /> 276 <field field_ref="Fer" /> 277 <field field_ref="NCHL" /> 278 <field field_ref="DCHL" /> 279 <field field_ref="NO3" /> 280 </file> 281 282 <file id="file11" name_suffix="_diad_T" description="additional pisces diagnostics" > 283 <field field_ref="Cflx" /> 284 <field field_ref="Dpco2" /> 285 </file> 286 287 </file_group> 288 <file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files --> 289 <file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files --> 290 <file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files --> 291 <file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files --> 292 293 <file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 294 295 <file id="file12" name_suffix="_ptrc_T" description="pisces sms variables" > 296 <field field_ref="DIC" /> 297 <field field_ref="Alkalini" /> 298 <field field_ref="O2" /> 299 <field field_ref="CaCO3" /> 300 <field field_ref="PO4" /> 301 <field field_ref="POC" /> 302 <field field_ref="Si" /> 303 <field field_ref="PHY" /> 304 <field field_ref="ZOO" /> 305 <field field_ref="DOC" /> 306 <field field_ref="PHY2" /> 307 <field field_ref="ZOO2" /> 308 <field field_ref="DSi" /> 309 <field field_ref="Fer" /> 310 <field field_ref="BFe" /> 311 <field field_ref="GOC" /> 312 <field field_ref="SFe" /> 313 <field field_ref="DFe" /> 314 <field field_ref="GSi" /> 315 <field field_ref="NFe" /> 316 <field field_ref="NCHL" /> 317 <field field_ref="DCHL" /> 318 <field field_ref="NO3" /> 319 <field field_ref="NH4" /> 320 </file> 321 322 <file id="file13" name_suffix="_diad_T" description="additional pisces diagnostics" > 323 <field field_ref="PH" /> 324 <field field_ref="PAR" /> 325 <field field_ref="PPPHYN" /> 326 <field field_ref="PPPHYD" /> 327 <field field_ref="PPPHYP" /> 328 <field field_ref="PPNEWN" /> 329 <field field_ref="PPNEWD" /> 330 <field field_ref="PPNEWP" /> 331 <field field_ref="PBSi" /> 332 <field field_ref="PFeN" /> 333 <field field_ref="PFeD" /> 334 <field field_ref="PCAL" /> 335 <field field_ref="DCAL" /> 336 <field field_ref="GRAZ1" /> 337 <field field_ref="GRAZ2" /> 338 <field field_ref="EPC100" /> 339 <field field_ref="EPFE100" /> 340 <field field_ref="EPSI100" /> 341 <field field_ref="EPCAL100" /> 342 <field field_ref="Cflx" /> 343 <field field_ref="Dpco2" /> 344 <field field_ref="Heup" /> 345 <field field_ref="Nfix" /> 346 </file> 347 </file_group> 348 349 <file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files --> 350 <file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files --> 351 <file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files --> 352 353 </file_definition> 354 355 <!-- 356 ============================================================================================================ 357 = grid definition = = DO NOT CHANGE = 358 ============================================================================================================ 359 --> 360 361 <axis_definition> 362 <axis id="deptht" long_name="Vertical T levels" unit="m" positive="down" /> 363 <axis id="depthu" long_name="Vertical U levels" unit="m" positive="down" /> 364 <axis id="depthv" long_name="Vertical V levels" unit="m" positive="down" /> 365 <axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" /> 366 <axis id="nfloat" long_name="Float number" unit="1" /> 367 <axis id="icbcla" long_name="Iceberg class" unit="1" /> 368 <axis id="ncatice" long_name="Ice category" unit="1" /> 369 <axis id="iax_20C" long_name="20 degC isotherm" unit="degC" /> 370 <axis id="iax_28C" long_name="28 degC isotherm" unit="degC" /> 371 </axis_definition> 372 373 <domain_definition src="./domain_def.xml"/> 374 375 <grid_definition> 376 <grid id="grid_T_2D" domain_ref="grid_T"/> 377 <grid id="grid_T_3D" domain_ref="grid_T" axis_ref="deptht"/> 378 <grid id="grid_U_2D" domain_ref="grid_U"/> 379 <grid id="grid_U_3D" domain_ref="grid_U" axis_ref="depthu"/> 380 <grid id="grid_V_2D" domain_ref="grid_V"/> 381 <grid id="grid_V_3D" domain_ref="grid_V" axis_ref="depthv"/> 382 <grid id="grid_W_2D" domain_ref="grid_W"/> 383 <grid id="grid_W_3D" domain_ref="grid_W" axis_ref="depthw"/> 384 <grid id="gznl_T_2D" domain_ref="gznl"/> 385 <grid id="gznl_T_3D" domain_ref="gznl" axis_ref="deptht"/> 386 <grid id="gznl_W_3D" domain_ref="gznl" axis_ref="depthw"/> 387 </grid_definition> 388 </context> 389 390 391 <context id="xios"> 8 <context id="xios" > 392 9 393 10 <variable_definition> 394 395 <!-- 396 We must have buffer_size > jpi*jpj*jpk*8 (with jpi and jpj the subdomain size) 397 --> 398 <variable id="buffer_size" type="integer">50000000</variable> 399 <variable id="buffer_server_factor_size" type="integer">2</variable> 400 <variable id="info_level" type="integer">0</variable> 401 <variable id="using_server" type="boolean">false</variable> 402 <variable id="using_oasis" type="boolean">false</variable> 403 <variable id="oasis_codes_id" type="string" >oceanx</variable> 404 11 12 <variable id="info_level" type="int">10</variable> 13 <variable id="using_server" type="bool">true</variable> 14 <variable id="using_oasis" type="bool">false</variable> 15 <variable id="oasis_codes_id" type="string" >oceanx</variable> 16 405 17 </variable_definition> 406 407 18 </context> 408 19 20 <!-- ============================================================================================ --> 21 <!-- NEMO CONTEXT add and suppress the components you need --> 22 <!-- ============================================================================================ --> 23 24 <context id="nemo" src="./context_nemo.xml"/> <!-- NEMO --> 25 409 26 </simulation>
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