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Changeset 7753 for trunk/NEMOGCM/SETTE/sette.sh – NEMO

Ignore:
Timestamp:
2017-03-03T12:46:59+01:00 (7 years ago)
Author:
mocavero
Message:

Reverting trunk to remove OpenMP

File:
1 edited

Legend:

Unmodified
Added
Removed

  • trunk/NEMOGCM/SETTE/sette.sh

    r7744 r7753  
    3636#                      "yes" to run in MPMD (detached) mode with stand-alone IO servers 
    3737#                      "no"  to run in SPMD (attached) mode without separate IO servers  
    38 # USING_OMP         : flag to control the use of OpenMP parallelization 
    3938# NUM_XIOSERVERS    : number of stand-alone IO servers to employ 
    4039#                     set to zero if USING_MPMD="no" 
    … …  
    9190COMPILER=X64_ADA 
    9291 
    93 export USING_OMP="no" 
    9492export BATCH_COMMAND_PAR="llsubmit" 
    9593export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR 
    … …  
    121119   echo "Incompatible choices. MPMD mode requires the XIOS server" 
    122120   exit 
    123 fi 
    124 # 
    125 # Settings which control the hybrid parallel execution 
    126 # 
    127 OMP_NTHR=1 
    128 if [ ${USING_OMP} == "yes" ] 
    129  then 
    130    OMP_NTHR=8 
    131121fi 
    132122 
    … …  
    188178    fi 
    189179    cd ${SETTE_DIR} 
    190     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     180    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    191181 
    192182    cd ${SETTE_DIR} 
    … …  
    228218    fi 
    229219    cd ${SETTE_DIR} 
    230     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     220    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    231221    cd ${SETTE_DIR} 
    232222    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    263253    fi 
    264254    cd ${SETTE_DIR} 
    265     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     255    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    266256    cd ${SETTE_DIR} 
    267257    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    291281    fi 
    292282    cd ${SETTE_DIR} 
    293     . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     283    . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    294284    cd ${SETTE_DIR} 
    295285    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    340330    fi 
    341331    cd ${SETTE_DIR} 
    342     . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     332    . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    343333     
    344334    cd ${SETTE_DIR} 
    … …  
    392382    fi 
    393383    cd ${SETTE_DIR} 
    394     . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     384    . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    395385    cd ${SETTE_DIR} 
    396386    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    441431    fi 
    442432    cd ${SETTE_DIR} 
    443     . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     433    . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    444434    cd ${SETTE_DIR} 
    445435    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    482472    fi 
    483473    cd ${SETTE_DIR} 
    484     . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     474    . ./prepare_job.sh input_ORCA2_LIM3_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    485475    cd ${SETTE_DIR} 
    486476    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    531521    fi 
    532522    cd ${SETTE_DIR} 
    533     . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     523    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    534524     
    535525    cd ${SETTE_DIR} 
    … …  
    574564    fi 
    575565    cd ${SETTE_DIR} 
    576     . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME}  ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     566    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME}  ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    577567    cd ${SETTE_DIR} 
    578568    . ./fcm_job.sh $NPROC  ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    621611    fi 
    622612    cd ${SETTE_DIR} 
    623     . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     613    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    624614    cd ${SETTE_DIR} 
    625615    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    661651    fi 
    662652    cd ${SETTE_DIR} 
    663     . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     653    . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    664654    cd ${SETTE_DIR} 
    665655    . ./fcm_job.sh $NPROC  ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    697687    fi 
    698688    cd ${SETTE_DIR} 
    699     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     689    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    700690 
    701691    cd ${SETTE_DIR} 
    … …  
    728718    fi 
    729719    cd ${SETTE_DIR} 
    730     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     720    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    731721    cd ${SETTE_DIR} 
    732722    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    762752    fi 
    763753    cd ${SETTE_DIR} 
    764     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     754    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    765755    cd ${SETTE_DIR} 
    766756    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    788778    fi 
    789779    cd ${SETTE_DIR} 
    790     . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     780    . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    791781    cd ${SETTE_DIR} 
    792782    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    826816    fi 
    827817    cd ${SETTE_DIR} 
    828     . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     818    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    829819 
    830820    cd ${SETTE_DIR} 
    … …  
    857847    done 
    858848    cd ${SETTE_DIR} 
    859     . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     849    . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    860850    cd ${SETTE_DIR} 
    861851    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    891881    fi 
    892882    cd ${SETTE_DIR} 
    893     . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     883    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    894884 
    895885    cd ${SETTE_DIR} 
    … …  
    925915    fi 
    926916    cd ${SETTE_DIR} 
    927     . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     917    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    928918    cd ${SETTE_DIR} 
    929919    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    957947    fi 
    958948    cd ${SETTE_DIR} 
    959     . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     949    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    960950    cd ${SETTE_DIR} 
    961951    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    983973    fi 
    984974    cd ${SETTE_DIR} 
    985     . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     975    . ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    986976    cd ${SETTE_DIR} 
    987977    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    10461036    fi 
    10471037    cd ${SETTE_DIR} 
    1048     . ./prepare_job.sh input_ORCA2_LIM3_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1038    . ./prepare_job.sh input_ORCA2_LIM3_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    10491039    cd ${SETTE_DIR} 
    10501040    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    10991089    fi 
    11001090    cd ${SETTE_DIR} 
    1101     . ./prepare_job.sh input_ORCA2_LIM3_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1091    . ./prepare_job.sh input_ORCA2_LIM3_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    11021092    cd ${SETTE_DIR} 
    11031093    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    11431133    fi 
    11441134    cd ${SETTE_DIR} 
    1145     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1135    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    11461136    cd ${SETTE_DIR} 
    11471137    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    11851175    fi 
    11861176    cd ${SETTE_DIR} 
    1187     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1177    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    11881178    cd ${SETTE_DIR} 
    11891179    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    12191209    fi 
    12201210    cd ${SETTE_DIR} 
    1221     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1211    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    12221212    cd ${SETTE_DIR} 
    12231213    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    12681258    fi 
    12691259    cd ${SETTE_DIR} 
    1270     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1260    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    12711261     
    12721262    cd ${SETTE_DIR} 
    … …  
    13171307    fi 
    13181308    cd ${SETTE_DIR} 
    1319     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1309    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    13201310    cd ${SETTE_DIR} 
    13211311    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    13621352    fi 
    13631353    cd ${SETTE_DIR} 
    1364     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1354    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    13651355    cd ${SETTE_DIR} 
    13661356    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
    … …  
    14001390    fi 
    14011391    cd ${SETTE_DIR} 
    1402     . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${OMP_NTHR} 
     1392    . ./prepare_job.sh input_ORCA2_LIM3_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} 
    14031393    cd ${SETTE_DIR} 
    14041394    . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 
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