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Changeset 9363 for branches/2017/dev_merge_2017/DOC/TexFiles/Chapters/Chap_DYN.tex – NEMO

Ignore:
Timestamp:
2018-02-28T10:29:22+01:00 (6 years ago)
Author:
nicolasmartin
Message:

Working with htlatex (LaTeX to HTML): disable floatrow package globally, fix several issues by adding \protect to all "fragile" commands (\mdl, \np, \key and \ngn) inside floats (caption or table). Still few specific issues inside Annnex_ISO

File:
1 edited

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  • branches/2017/dev_merge_2017/DOC/TexFiles/Chapters/Chap_DYN.tex

    r7646 r9363  
    7070%-------------------------------------------------------------------------------------------------------------- 
    7171\subsection   [Horizontal divergence and relative vorticity (\textit{divcur})] 
    72          {Horizontal divergence and relative vorticity (\mdl{divcur})} 
     72         {Horizontal divergence and relative vorticity (\protect\mdl{divcur})} 
    7373\label{DYN_divcur} 
    7474 
    … …  
    103103%-------------------------------------------------------------------------------------------------------------- 
    104104\subsection   [Sea surface height evolution and vertical velocity (\textit{sshwzv})] 
    105          {Horizontal divergence and relative vorticity (\mdl{sshwzv})} 
     105         {Horizontal divergence and relative vorticity (\protect\mdl{sshwzv})} 
    106106\label{DYN_sshwzv} 
    107107 
    … …  
    179179% ------------------------------------------------------------------------------------------------------------- 
    180180\subsection   [Vorticity term (\textit{dynvor}) ] 
    181          {Vorticity term (\mdl{dynvor})} 
     181         {Vorticity term (\protect\mdl{dynvor})} 
    182182\label{DYN_vor} 
    183183%------------------------------------------nam_dynvor---------------------------------------------------- 
    … …  
    200200%                 enstrophy conserving scheme 
    201201%------------------------------------------------------------- 
    202 \subsubsection{Enstrophy conserving scheme (\np{ln\_dynvor\_ens}=true)} 
     202\subsubsection{Enstrophy conserving scheme (\protect\np{ln\_dynvor\_ens}=true)} 
    203203\label{DYN_vor_ens} 
    204204 
    … …  
    221221%                 energy conserving scheme 
    222222%------------------------------------------------------------- 
    223 \subsubsection{Energy conserving scheme (\np{ln\_dynvor\_ene}=true)} 
     223\subsubsection{Energy conserving scheme (\protect\np{ln\_dynvor\_ene}=true)} 
    224224\label{DYN_vor_ene} 
    225225 
    … …  
    238238%                 mix energy/enstrophy conserving scheme 
    239239%------------------------------------------------------------- 
    240 \subsubsection{Mixed energy/enstrophy conserving scheme (\np{ln\_dynvor\_mix}=true) } 
     240\subsubsection{Mixed energy/enstrophy conserving scheme (\protect\np{ln\_dynvor\_mix}=true) } 
    241241\label{DYN_vor_mix} 
    242242 
    … …  
    261261%                 energy and enstrophy conserving scheme 
    262262%------------------------------------------------------------- 
    263 \subsubsection{Energy and enstrophy conserving scheme (\np{ln\_dynvor\_een}=true) } 
     263\subsubsection{Energy and enstrophy conserving scheme (\protect\np{ln\_dynvor\_een}=true) } 
    264264\label{DYN_vor_een} 
    265265 
    … …  
    297297\begin{figure}[!ht]    \begin{center} 
    298298\includegraphics[width=0.70\textwidth]{Fig_DYN_een_triad} 
    299 \caption{ \label{Fig_DYN_een_triad}   
     299\caption{ \protect\label{Fig_DYN_een_triad}   
    300300Triads used in the energy and enstrophy conserving scheme (een) for  
    301301$u$-component (upper panel) and $v$-component (lower panel).} 
    … …  
    347347%-------------------------------------------------------------------------------------------------------------- 
    348348\subsection   [Kinetic Energy Gradient term (\textit{dynkeg})] 
    349          {Kinetic Energy Gradient term (\mdl{dynkeg})} 
     349         {Kinetic Energy Gradient term (\protect\mdl{dynkeg})} 
    350350\label{DYN_keg} 
    351351 
    … …  
    364364%-------------------------------------------------------------------------------------------------------------- 
    365365\subsection   [Vertical advection term (\textit{dynzad}) ] 
    366          {Vertical advection term (\mdl{dynzad}) } 
     366         {Vertical advection term (\protect\mdl{dynzad}) } 
    367367\label{DYN_zad} 
    368368 
    … …  
    406406%-------------------------------------------------------------------------------------------------------------- 
    407407\subsection   [Coriolis plus curvature metric terms (\textit{dynvor}) ] 
    408          {Coriolis plus curvature metric terms (\mdl{dynvor}) } 
     408         {Coriolis plus curvature metric terms (\protect\mdl{dynvor}) } 
    409409\label{DYN_cor_flux} 
    410410 
    … …  
    428428%-------------------------------------------------------------------------------------------------------------- 
    429429\subsection   [Flux form Advection term (\textit{dynadv}) ] 
    430          {Flux form Advection term (\mdl{dynadv}) } 
     430         {Flux form Advection term (\protect\mdl{dynadv}) } 
    431431\label{DYN_adv_flux} 
    432432 
    … …  
    460460%                 2nd order centred scheme 
    461461%------------------------------------------------------------- 
    462 \subsubsection{$2^{nd}$ order centred scheme (cen2) (\np{ln\_dynadv\_cen2}=true)} 
     462\subsubsection{$2^{nd}$ order centred scheme (cen2) (\protect\np{ln\_dynadv\_cen2}=true)} 
    463463\label{DYN_adv_cen2} 
    464464 
    … …  
    481481%                 UBS scheme 
    482482%------------------------------------------------------------- 
    483 \subsubsection{Upstream Biased Scheme (UBS) (\np{ln\_dynadv\_ubs}=true)} 
     483\subsubsection{Upstream Biased Scheme (UBS) (\protect\np{ln\_dynadv\_ubs}=true)} 
    484484\label{DYN_adv_ubs} 
    485485 
    … …  
    533533% ================================================================ 
    534534\section  [Hydrostatic pressure gradient (\textit{dynhpg})] 
    535       {Hydrostatic pressure gradient (\mdl{dynhpg})} 
     535      {Hydrostatic pressure gradient (\protect\mdl{dynhpg})} 
    536536\label{DYN_hpg} 
    537537%------------------------------------------nam_dynhpg--------------------------------------------------- 
    … …  
    554554%           z-coordinate with full step 
    555555%-------------------------------------------------------------------------------------------------------------- 
    556 \subsection   [$z$-coordinate with full step (\np{ln\_dynhpg\_zco}) ] 
    557          {$z$-coordinate with full step (\np{ln\_dynhpg\_zco}=true)} 
     556\subsection   [$z$-coordinate with full step (\protect\np{ln\_dynhpg\_zco}) ] 
     557         {$z$-coordinate with full step (\protect\np{ln\_dynhpg\_zco}=true)} 
    558558\label{DYN_hpg_zco} 
    559559 
    … …  
    595595%           z-coordinate with partial step 
    596596%-------------------------------------------------------------------------------------------------------------- 
    597 \subsection   [$z$-coordinate with partial step (\np{ln\_dynhpg\_zps})] 
    598          {$z$-coordinate with partial step (\np{ln\_dynhpg\_zps}=true)} 
     597\subsection   [$z$-coordinate with partial step (\protect\np{ln\_dynhpg\_zps})] 
     598         {$z$-coordinate with partial step (\protect\np{ln\_dynhpg\_zps}=true)} 
    599599\label{DYN_hpg_zps} 
    600600 
    … …  
    673673%           Time-scheme 
    674674%-------------------------------------------------------------------------------------------------------------- 
    675 \subsection   [Time-scheme (\np{ln\_dynhpg\_imp}) ] 
    676          {Time-scheme (\np{ln\_dynhpg\_imp}= true/false)} 
     675\subsection   [Time-scheme (\protect\np{ln\_dynhpg\_imp}) ] 
     676         {Time-scheme (\protect\np{ln\_dynhpg\_imp}= true/false)} 
    677677\label{DYN_hpg_imp} 
    678678 
    … …  
    733733% ================================================================ 
    734734\section  [Surface pressure gradient (\textit{dynspg}) ] 
    735       {Surface pressure gradient (\mdl{dynspg})} 
     735      {Surface pressure gradient (\protect\mdl{dynspg})} 
    736736\label{DYN_spg} 
    737737%-----------------------------------------nam_dynspg---------------------------------------------------- 
    … …  
    772772% Explicit free surface formulation 
    773773%-------------------------------------------------------------------------------------------------------------- 
    774 \subsection{Explicit free surface (\key{dynspg\_exp})} 
     774\subsection{Explicit free surface (\protect\key{dynspg\_exp})} 
    775775\label{DYN_spg_exp} 
    776776 
    … …  
    793793% Split-explict free surface formulation 
    794794%-------------------------------------------------------------------------------------------------------------- 
    795 \subsection{Split-Explicit free surface (\key{dynspg\_ts})} 
     795\subsection{Split-Explicit free surface (\protect\key{dynspg\_ts})} 
    796796\label{DYN_spg_ts} 
    797797%------------------------------------------namsplit----------------------------------------------------------- 
    … …  
    830830\begin{figure}[!t]    \begin{center} 
    831831\includegraphics[width=0.7\textwidth]{Fig_DYN_dynspg_ts} 
    832 \caption{  \label{Fig_DYN_dynspg_ts} 
     832\caption{  \protect\label{Fig_DYN_dynspg_ts} 
    833833Schematic of the split-explicit time stepping scheme for the external  
    834834and internal modes. Time increases to the right. In this particular exemple,  
    … …  
    839839The former are used to obtain time filtered quantities at $t+\rdt$ while the latter are used to obtain time averaged  
    840840transports to advect tracers. 
    841 a) Forward time integration: \np{ln\_bt\_fw}=true,  \np{ln\_bt\_av}=true.  
    842 b) Centred time integration: \np{ln\_bt\_fw}=false, \np{ln\_bt\_av}=true.  
    843 c) Forward time integration with no time filtering (POM-like scheme): \np{ln\_bt\_fw}=true, \np{ln\_bt\_av}=false. } 
     841a) Forward time integration: \protect\np{ln\_bt\_fw}=true,  \protect\np{ln\_bt\_av}=true.  
     842b) Centred time integration: \protect\np{ln\_bt\_fw}=false, \protect\np{ln\_bt\_av}=true.  
     843c) Forward time integration with no time filtering (POM-like scheme): \protect\np{ln\_bt\_fw}=true, \protect\np{ln\_bt\_av}=false. } 
    844844\end{center}    \end{figure} 
    845845%>   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   >   > 
    … …  
    975975% Filtered free surface formulation 
    976976%-------------------------------------------------------------------------------------------------------------- 
    977 \subsection{Filtered free surface (\key{dynspg\_flt})} 
     977\subsection{Filtered free surface (\protect\key{dynspg\_flt})} 
    978978\label{DYN_spg_fltp} 
    979979 
    … …  
    10021002% ================================================================ 
    10031003\section  [Lateral diffusion term (\textit{dynldf})] 
    1004       {Lateral diffusion term (\mdl{dynldf})} 
     1004      {Lateral diffusion term (\protect\mdl{dynldf})} 
    10051005\label{DYN_ldf} 
    10061006%------------------------------------------nam_dynldf---------------------------------------------------- 
    … …  
    10361036 
    10371037% ================================================================ 
    1038 \subsection   [Iso-level laplacian operator (\np{ln\_dynldf\_lap}) ] 
    1039          {Iso-level laplacian operator (\np{ln\_dynldf\_lap}=true)} 
     1038\subsection   [Iso-level laplacian operator (\protect\np{ln\_dynldf\_lap}) ] 
     1039         {Iso-level laplacian operator (\protect\np{ln\_dynldf\_lap}=true)} 
    10401040\label{DYN_ldf_lap} 
    10411041 
    … …  
    10601060%           Rotated laplacian operator 
    10611061%-------------------------------------------------------------------------------------------------------------- 
    1062 \subsection   [Rotated laplacian operator (\np{ln\_dynldf\_iso}) ] 
    1063          {Rotated laplacian operator (\np{ln\_dynldf\_iso}=true)} 
     1062\subsection   [Rotated laplacian operator (\protect\np{ln\_dynldf\_iso}) ] 
     1063         {Rotated laplacian operator (\protect\np{ln\_dynldf\_iso}=true)} 
    10641064\label{DYN_ldf_iso} 
    10651065 
    … …  
    11291129%           Iso-level bilaplacian operator 
    11301130%-------------------------------------------------------------------------------------------------------------- 
    1131 \subsection   [Iso-level bilaplacian operator (\np{ln\_dynldf\_bilap})] 
    1132          {Iso-level bilaplacian operator (\np{ln\_dynldf\_bilap}=true)} 
     1131\subsection   [Iso-level bilaplacian operator (\protect\np{ln\_dynldf\_bilap})] 
     1132         {Iso-level bilaplacian operator (\protect\np{ln\_dynldf\_bilap}=true)} 
    11331133\label{DYN_ldf_bilap} 
    11341134 
    … …  
    11451145%           Vertical diffusion term 
    11461146% ================================================================ 
    1147 \section  [Vertical diffusion term (\mdl{dynzdf})] 
    1148       {Vertical diffusion term (\mdl{dynzdf})} 
     1147\section  [Vertical diffusion term (\protect\mdl{dynzdf})] 
     1148      {Vertical diffusion term (\protect\mdl{dynzdf})} 
    11491149\label{DYN_zdf} 
    11501150%----------------------------------------------namzdf------------------------------------------------------ 
    … …  
    12231223% ================================================================ 
    12241224\section  [Time evolution term (\textit{dynnxt})] 
    1225       {Time evolution term (\mdl{dynnxt})} 
     1225      {Time evolution term (\protect\mdl{dynnxt})} 
    12261226\label{DYN_nxt} 
    12271227 
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