Changeset 9407 for branches/2017/dev_merge_2017/DOC/tex_sub/chap_CONFIG.tex
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branches/2017/dev_merge_2017/DOC/tex_sub/chap_CONFIG.tex
r9394 r9407 5 5 % ================================================================ 6 6 \chapter{Configurations} 7 \label{ CFG}7 \label{chap:CFG} 8 8 \minitoc 9 9 … … 15 15 % ================================================================ 16 16 \section{Introduction} 17 \label{ CFG_intro}17 \label{sec:CFG_intro} 18 18 19 19 … … 33 33 % ================================================================ 34 34 \section{C1D: 1D Water column model (\protect\key{c1d}) } 35 \label{ CFG_c1d}35 \label{sec:CFG_c1d} 36 36 37 37 $\ $\newline … … 81 81 % ================================================================ 82 82 \section{ORCA family: global ocean with tripolar grid} 83 \label{ CFG_orca}83 \label{sec:CFG_orca} 84 84 85 85 The ORCA family is a series of global ocean configurations that are run together with … … 95 95 \begin{figure}[!t] \begin{center} 96 96 \includegraphics[width=0.98\textwidth]{Fig_ORCA_NH_mesh} 97 \caption{ \protect\label{ Fig_MISC_ORCA_msh}97 \caption{ \protect\label{fig:MISC_ORCA_msh} 98 98 ORCA mesh conception. The departure from an isotropic Mercator grid start poleward of 20\degN. 99 99 The two "north pole" are the foci of a series of embedded ellipses (blue curves) … … 108 108 % ------------------------------------------------------------------------------------------------------------- 109 109 \subsection{ORCA tripolar grid} 110 \label{ CFG_orca_grid}110 \label{subsec:CFG_orca_grid} 111 111 112 112 The ORCA grid is a tripolar is based on the semi-analytical method of \citet{Madec_Imbard_CD96}. … … 116 116 computing the associated set of mesh meridians, and projecting the resulting mesh onto the sphere. 117 117 The set of mesh parallels used is a series of embedded ellipses which foci are the two mesh north 118 poles ( Fig.~\ref{Fig_MISC_ORCA_msh}). The resulting mesh presents no loss of continuity in118 poles (\autoref{fig:MISC_ORCA_msh}). The resulting mesh presents no loss of continuity in 119 119 either the mesh lines or the scale factors, or even the scale factor derivatives over the whole 120 120 ocean domain, as the mesh is not a composite mesh. … … 123 123 \includegraphics[width=1.0\textwidth]{Fig_ORCA_NH_msh05_e1_e2} 124 124 \includegraphics[width=0.80\textwidth]{Fig_ORCA_aniso} 125 \caption { \protect\label{ Fig_MISC_ORCA_e1e2}125 \caption { \protect\label{fig:MISC_ORCA_e1e2} 126 126 \textit{Top}: Horizontal scale factors ($e_1$, $e_2$) and 127 127 \textit{Bottom}: ratio of anisotropy ($e_1 / e_2$) … … 141 141 the Gulf Stream) and keeping the smallest scale factor in the northern hemisphere larger 142 142 than the smallest one in the southern hemisphere. 143 The resulting mesh is shown in Fig.~\ref{Fig_MISC_ORCA_msh} and \ref{Fig_MISC_ORCA_e1e2}143 The resulting mesh is shown in \autoref{fig:MISC_ORCA_msh} and \autoref{fig:MISC_ORCA_e1e2} 144 144 for a half a degree grid (ORCA\_R05). 145 145 The smallest ocean scale factor is found in along Antarctica, while the ratio of anisotropy remains close to one except near the Victoria Island … … 150 150 % ------------------------------------------------------------------------------------------------------------- 151 151 \subsection{ORCA pre-defined resolution} 152 \label{ CFG_orca_resolution}152 \label{subsec:CFG_orca_resolution} 153 153 154 154 … … 156 156 horizontal resolution. The value of the resolution is given by the resolution at the Equator 157 157 expressed in degrees. Each of configuration is set through the \textit{domain\_cfg} domain configuration file, 158 which sets the grid size and configuration name parameters. The NEMO System Team provides only ORCA2 domain input file "\ifile{ORCA\_R2\_zps\_domcfg}" file (Tab. \ ref{Tab_ORCA}).158 which sets the grid size and configuration name parameters. The NEMO System Team provides only ORCA2 domain input file "\ifile{ORCA\_R2\_zps\_domcfg}" file (Tab. \autoref{tab:ORCA}). 159 159 160 160 … … 175 175 \hline \hline 176 176 \end{tabular} 177 \caption{ \protect\label{ Tab_ORCA}177 \caption{ \protect\label{tab:ORCA} 178 178 Domain size of ORCA family configurations. 179 179 The flag for configurations of ORCA family need to be set in \textit{domain\_cfg} file. } … … 196 196 For ORCA\_R1 and R025, setting the configuration key to 75 allows to use 75 vertical levels, 197 197 otherwise 46 are used. In the other ORCA configurations, 31 levels are used 198 (see Tab.~\ref{Tab_orca_zgr} \sfcomment{HERE I need to put new table for ORCA2 values} and Fig.~\ref{Fig_zgr}).198 (see \autoref{tab:orca_zgr} \sfcomment{HERE I need to put new table for ORCA2 values} and \autoref{fig:zgr}). 199 199 200 200 Only the ORCA\_R2 is provided with all its input files in the \NEMO distribution. … … 204 204 205 205 This version of ORCA\_R2 has 31 levels in the vertical, with the highest resolution (10m) 206 in the upper 150m (see Tab.~\ref{Tab_orca_zgr} and Fig.~\ref{Fig_zgr}).206 in the upper 150m (see \autoref{tab:orca_zgr} and \autoref{fig:zgr}). 207 207 The bottom topography and the coastlines are derived from the global atlas of Smith and Sandwell (1997). 208 The default forcing uses the boundary forcing from \citet{Large_Yeager_Rep04} (see \ S\ref{SBC_blk_core}),208 The default forcing uses the boundary forcing from \citet{Large_Yeager_Rep04} (see \autoref{subsec:SBC_blk_core}), 209 209 which was developed for the purpose of running global coupled ocean-ice simulations 210 210 without an interactive atmosphere. This \citet{Large_Yeager_Rep04} dataset is available … … 222 222 % ------------------------------------------------------------------------------------------------------------- 223 223 \section{GYRE family: double gyre basin } 224 \label{ CFG_gyre}224 \label{sec:CFG_gyre} 225 225 226 226 The GYRE configuration \citep{Levy_al_OM10} has been built to simulate … … 234 234 The domain geometry is a closed rectangular basin on the $\beta$-plane centred 235 235 at $\sim$ 30\degN and rotated by 45\deg, 3180~km long, 2120~km wide 236 and 4~km deep ( Fig.~\ref{Fig_MISC_strait_hand}).236 and 4~km deep (\autoref{fig:MISC_strait_hand}). 237 237 The domain is bounded by vertical walls and by a flat bottom. The configuration is 238 238 meant to represent an idealized North Atlantic or North Pacific basin. … … 257 257 Obviously, the namelist parameters have to be adjusted to the chosen resolution, see the Configurations 258 258 pages on the NEMO web site (Using NEMO\/Configurations) . 259 In the vertical, GYRE uses the default 30 ocean levels (\jp{jpk}\forcode{ = 31}) ( Fig.~\ref{Fig_zgr}).259 In the vertical, GYRE uses the default 30 ocean levels (\jp{jpk}\forcode{ = 31}) (\autoref{fig:zgr}). 260 260 261 261 The GYRE configuration is also used in benchmark test as it is very simple to increase … … 267 267 \begin{figure}[!t] \begin{center} 268 268 \includegraphics[width=1.0\textwidth]{Fig_GYRE} 269 \caption{ \protect\label{ Fig_GYRE}269 \caption{ \protect\label{fig:GYRE} 270 270 Snapshot of relative vorticity at the surface of the model domain 271 271 in GYRE R9, R27 and R54. From \citet{Levy_al_OM10}.} … … 277 277 % ------------------------------------------------------------------------------------------------------------- 278 278 \section{AMM: atlantic margin configuration} 279 \label{ MISC_config_AMM}279 \label{sec:MISC_config_AMM} 280 280 281 281 The AMM, Atlantic Margins Model, is a regional model covering the
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