commit changes/bugfix/... for SIREN

[jpaul]

new features :

• add optional use of relative position to get closest point
• add logger_clean subroutine
• new criteria for domain layout in case no land proc

main changes :

• manage useless (dummy) attributes
• manage useless (dummy) dimension
• manage useless (dummy) variable
• allow to run create boundary on multi processors with key_mpp_mpi
• define fill value for each variable type
• check used dimension when add variable in file, and write file
• add physical constant to compute meshmask
• check depth in create_bathy as in create_boundary
• check time in create_bathy as in create_boundary
• allow to create boundaries on multi processors with key_mpp_mpi
• same process use for boundaries extracted or interpolated from input file.
• use grid_get_closest to assess offset
• improve way to compute domain layout
• allow to print layout file (use lm_layout, hard coded)

bug fix :

• correct domain indices output information
• do not force to use zero as FillValue for any meshmask variable
• stop program for FATAL ERROR if verbosity is none
• close useless (dummy) configuration file
• use the MAX (not the MIN) of zero and asess value to get number of extra point.
• use delta (lon or lat) to assess offset
• manage cases for T,U,V or F point, with even or odd refinment to assess offset
• do not closed sea for east-west cyclic domain
• check lower left(upper right) fine grid point inside lower left(upper right) coarse grid cell to assess offset
• improve way to check coincidence (use F-point)
• increment n3d attribute for 4D variable
• fix mismatch with "halo" indices
• use temporary array to read value from file
• check character just after keyword to avoid mistake between min and min_error extrapolation method

[jpaul]

branches/2015/nemo_v3_6_STABLE

Committed at revision 6392

https://forge.ipsl.jussieu.fr/nemo/changeset/6392

trunk

Committed at revision 6393

https://forge.ipsl.jussieu.fr/nemo/changeset/6393