[3] | 1 | MODULE restart |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE restart *** |
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| 4 | !! Ocean restart : write the ocean restart file |
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[508] | 5 | !!====================================================================== |
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[2528] | 6 | !! History : OPA ! 1999-11 (M. Imbard) Original code |
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| 7 | !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form |
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| 8 | !! 2.0 ! 2006-07 (S. Masson) use IOM for restart |
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| 9 | !! 3.3 ! 2010-04 (M. Leclair, G. Madec) modified LF-RA |
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| 10 | !! - - ! 2010-10 (C. Ethe, G. Madec) TRC-TRA merge (T-S in 4D) |
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[5836] | 11 | !! 3.7 ! 2014-01 (G. Madec) suppression of curl and hdiv from the restart |
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| 12 | !! - ! 2014-12 (G. Madec) remove KPP scheme |
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[508] | 13 | !!---------------------------------------------------------------------- |
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[3] | 14 | |
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| 15 | !!---------------------------------------------------------------------- |
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[508] | 16 | !! rst_opn : open the ocean restart file |
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| 17 | !! rst_write : write the ocean restart file |
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| 18 | !! rst_read : read the ocean restart file |
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[3] | 19 | !!---------------------------------------------------------------------- |
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[2528] | 20 | USE oce ! ocean dynamics and tracers |
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[3] | 21 | USE dom_oce ! ocean space and time domain |
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[9654] | 22 | USE sbc_ice ! only lk_si3 |
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[3] | 23 | USE phycst ! physical constants |
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[5836] | 24 | USE eosbn2 ! equation of state (eos bn2 routine) |
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| 25 | USE trdmxl_oce ! ocean active mixed layer tracers trends variables |
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| 26 | ! |
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[508] | 27 | USE in_out_manager ! I/O manager |
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| 28 | USE iom ! I/O module |
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[10989] | 29 | USE diu_bulk |
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[10425] | 30 | USE lib_mpp ! distribued memory computing library |
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[9367] | 31 | |
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[3] | 32 | IMPLICIT NONE |
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| 33 | PRIVATE |
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| 34 | |
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[4292] | 35 | PUBLIC rst_opn ! routine called by step module |
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| 36 | PUBLIC rst_write ! routine called by step module |
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| 37 | PUBLIC rst_read ! routine called by istate module |
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| 38 | PUBLIC rst_read_open ! routine called in rst_read and (possibly) in dom_vvl_init |
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[3] | 39 | |
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[508] | 40 | !! * Substitutions |
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| 41 | # include "vectopt_loop_substitute.h90" |
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[3] | 42 | !!---------------------------------------------------------------------- |
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[9598] | 43 | !! NEMO/OCE 4.0 , NEMO Consortium (2018) |
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[888] | 44 | !! $Id$ |
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[10068] | 45 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[359] | 46 | !!---------------------------------------------------------------------- |
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[3] | 47 | CONTAINS |
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| 48 | |
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[508] | 49 | SUBROUTINE rst_opn( kt ) |
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| 50 | !!--------------------------------------------------------------------- |
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| 51 | !! *** ROUTINE rst_opn *** |
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| 52 | !! |
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| 53 | !! ** Purpose : + initialization (should be read in the namelist) of nitrst |
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| 54 | !! + open the restart when we are one time step before nitrst |
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| 55 | !! - restart header is defined when kt = nitrst-1 |
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| 56 | !! - restart data are written when kt = nitrst |
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| 57 | !! + define lrst_oce to .TRUE. when we need to define or write the restart |
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| 58 | !!---------------------------------------------------------------------- |
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| 59 | INTEGER, INTENT(in) :: kt ! ocean time-step |
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| 60 | !! |
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| 61 | CHARACTER(LEN=20) :: clkt ! ocean time-step deine as a character |
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[5341] | 62 | CHARACTER(LEN=50) :: clname ! ocean output restart file name |
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| 63 | CHARACTER(lc) :: clpath ! full path to ocean output restart file |
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[9367] | 64 | CHARACTER(LEN=52) :: clpname ! ocean output restart file name including prefix for AGRIF |
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[9535] | 65 | CHARACTER(LEN=256) :: clinfo ! info character |
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[508] | 66 | !!---------------------------------------------------------------------- |
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| 67 | ! |
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[783] | 68 | IF( kt == nit000 ) THEN ! default definitions |
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| 69 | lrst_oce = .FALSE. |
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[5341] | 70 | IF( ln_rst_list ) THEN |
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| 71 | nrst_lst = 1 |
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[11822] | 72 | nitrst = nn_stocklist( nrst_lst ) |
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[5341] | 73 | ELSE |
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| 74 | nitrst = nitend |
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| 75 | ENDIF |
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[508] | 76 | ENDIF |
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[11822] | 77 | |
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| 78 | IF( .NOT. ln_rst_list .AND. nn_stock == -1 ) RETURN ! we will never do any restart |
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[5341] | 79 | |
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| 80 | ! frequency-based restart dumping (nn_stock) |
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[11822] | 81 | IF( .NOT. ln_rst_list .AND. MOD( kt - 1, nn_stock ) == 0 ) THEN |
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[783] | 82 | ! we use kt - 1 and not kt - nit000 to keep the same periodicity from the beginning of the experiment |
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[11822] | 83 | nitrst = kt + nn_stock - 1 ! define the next value of nitrst for restart writing |
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[783] | 84 | IF( nitrst > nitend ) nitrst = nitend ! make sure we write a restart at the end of the run |
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| 85 | ENDIF |
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| 86 | ! to get better performances with NetCDF format: |
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| 87 | ! we open and define the ocean restart file one time step before writing the data (-> at nitrst - 1) |
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| 88 | ! except if we write ocean restart files every time step or if an ocean restart file was writen at nitend - 1 |
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[11822] | 89 | IF( kt == nitrst - 1 .OR. nn_stock == 1 .OR. ( kt == nitend .AND. .NOT. lrst_oce ) ) THEN |
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[5341] | 90 | IF( nitrst <= nitend .AND. nitrst > 0 ) THEN |
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| 91 | ! beware of the format used to write kt (default is i8.8, that should be large enough...) |
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| 92 | IF( nitrst > 999999999 ) THEN ; WRITE(clkt, * ) nitrst |
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| 93 | ELSE ; WRITE(clkt, '(i8.8)') nitrst |
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[611] | 94 | ENDIF |
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[5341] | 95 | ! create the file |
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| 96 | clname = TRIM(cexper)//"_"//TRIM(ADJUSTL(clkt))//"_"//TRIM(cn_ocerst_out) |
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| 97 | clpath = TRIM(cn_ocerst_outdir) |
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| 98 | IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/' |
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| 99 | IF(lwp) THEN |
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| 100 | WRITE(numout,*) |
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[9367] | 101 | IF(.NOT.lwxios) THEN |
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[10425] | 102 | WRITE(numout,*) ' open ocean restart NetCDF file: ',TRIM(clpath)//TRIM(clname) |
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[9367] | 103 | IF ( snc4set%luse ) WRITE(numout,*) ' opened for NetCDF4 chunking and compression' |
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| 104 | IF( kt == nitrst - 1 ) THEN ; WRITE(numout,*) ' kt = nitrst - 1 = ', kt |
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| 105 | ELSE ; WRITE(numout,*) ' kt = ' , kt |
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| 106 | ENDIF |
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[5341] | 107 | ENDIF |
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| 108 | ENDIF |
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| 109 | ! |
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[9367] | 110 | IF(.NOT.lwxios) THEN |
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[10425] | 111 | CALL iom_open( TRIM(clpath)//TRIM(clname), numrow, ldwrt = .TRUE. ) |
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[9367] | 112 | ELSE |
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[9535] | 113 | #if defined key_iomput |
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[9367] | 114 | cwxios_context = "rstw_"//TRIM(ADJUSTL(clkt)) |
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| 115 | IF( TRIM(Agrif_CFixed()) == '0' ) THEN |
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| 116 | clpname = clname |
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| 117 | ELSE |
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| 118 | clpname = TRIM(Agrif_CFixed())//"_"//clname |
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| 119 | ENDIF |
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[9903] | 120 | CALL iom_init( cwxios_context, TRIM(clpath)//TRIM(clpname), .false. ) |
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[9367] | 121 | CALL xios_update_calendar(nitrst) |
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| 122 | CALL iom_swap( cxios_context ) |
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[9535] | 123 | #else |
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| 124 | clinfo = 'Can not use XIOS in rst_opn' |
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| 125 | CALL ctl_stop(TRIM(clinfo)) |
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| 126 | #endif |
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[9367] | 127 | ENDIF |
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[5341] | 128 | lrst_oce = .TRUE. |
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[611] | 129 | ENDIF |
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[508] | 130 | ENDIF |
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| 131 | ! |
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| 132 | END SUBROUTINE rst_opn |
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| 133 | |
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| 134 | |
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[10922] | 135 | SUBROUTINE rst_write( kt, Kbb, Kmm ) |
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[3] | 136 | !!--------------------------------------------------------------------- |
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| 137 | !! *** ROUTINE rstwrite *** |
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| 138 | !! |
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[10425] | 139 | !! ** Purpose : Write restart fields in NetCDF format |
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[3] | 140 | !! |
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[508] | 141 | !! ** Method : Write in numrow when kt == nitrst in NetCDF |
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[2528] | 142 | !! file, save fields which are necessary for restart |
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[3] | 143 | !!---------------------------------------------------------------------- |
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[10922] | 144 | INTEGER, INTENT(in) :: kt ! ocean time-step |
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| 145 | INTEGER, INTENT(in) :: Kbb, Kmm ! ocean time level indices |
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[3] | 146 | !!---------------------------------------------------------------------- |
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[9367] | 147 | IF(lwxios) CALL iom_swap( cwxios_context ) |
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| 148 | CALL iom_rstput( kt, nitrst, numrow, 'rdt' , rdt , ldxios = lwxios) ! dynamics time step |
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[10425] | 149 | CALL iom_delay_rst( 'WRITE', 'OCE', numrow ) ! save only ocean delayed global communication variables |
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[1239] | 150 | |
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[6140] | 151 | IF ( .NOT. ln_diurnal_only ) THEN |
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[11027] | 152 | CALL iom_rstput( kt, nitrst, numrow, 'ub' , uu(:,:,: ,Kbb), ldxios = lwxios ) ! before fields |
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| 153 | CALL iom_rstput( kt, nitrst, numrow, 'vb' , vv(:,:,: ,Kbb), ldxios = lwxios ) |
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[10922] | 154 | CALL iom_rstput( kt, nitrst, numrow, 'tb' , ts(:,:,:,jp_tem,Kbb), ldxios = lwxios ) |
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| 155 | CALL iom_rstput( kt, nitrst, numrow, 'sb' , ts(:,:,:,jp_sal,Kbb), ldxios = lwxios ) |
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[11027] | 156 | CALL iom_rstput( kt, nitrst, numrow, 'sshb' ,ssh(:,: ,Kbb), ldxios = lwxios ) |
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[4990] | 157 | ! |
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[11027] | 158 | CALL iom_rstput( kt, nitrst, numrow, 'un' , uu(:,:,: ,Kmm), ldxios = lwxios ) ! now fields |
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| 159 | CALL iom_rstput( kt, nitrst, numrow, 'vn' , vv(:,:,: ,Kmm), ldxios = lwxios ) |
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[10922] | 160 | CALL iom_rstput( kt, nitrst, numrow, 'tn' , ts(:,:,:,jp_tem,Kmm), ldxios = lwxios ) |
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| 161 | CALL iom_rstput( kt, nitrst, numrow, 'sn' , ts(:,:,:,jp_sal,Kmm), ldxios = lwxios ) |
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[11027] | 162 | CALL iom_rstput( kt, nitrst, numrow, 'sshn' ,ssh(:,: ,Kmm), ldxios = lwxios ) |
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[9367] | 163 | CALL iom_rstput( kt, nitrst, numrow, 'rhop' , rhop, ldxios = lwxios ) |
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[6140] | 164 | ! extra variable needed for the ice sheet coupling |
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| 165 | IF ( ln_iscpl ) THEN |
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[9367] | 166 | CALL iom_rstput( kt, nitrst, numrow, 'tmask' , tmask, ldxios = lwxios ) ! need to extrapolate T/S |
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| 167 | CALL iom_rstput( kt, nitrst, numrow, 'umask' , umask, ldxios = lwxios ) ! need to correct barotropic velocity |
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| 168 | CALL iom_rstput( kt, nitrst, numrow, 'vmask' , vmask, ldxios = lwxios ) ! need to correct barotropic velocity |
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| 169 | CALL iom_rstput( kt, nitrst, numrow, 'smask' , ssmask, ldxios = lwxios) ! need to correct barotropic velocity |
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[10922] | 170 | CALL iom_rstput( kt, nitrst, numrow, 'e3t_n', e3t(:,:,:,Kmm), ldxios = lwxios ) ! need to compute temperature correction |
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| 171 | CALL iom_rstput( kt, nitrst, numrow, 'e3u_n', e3u(:,:,:,Kmm), ldxios = lwxios ) ! need to compute bt conservation |
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| 172 | CALL iom_rstput( kt, nitrst, numrow, 'e3v_n', e3v(:,:,:,Kmm), ldxios = lwxios ) ! need to compute bt conservation |
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| 173 | CALL iom_rstput( kt, nitrst, numrow, 'gdepw_n', gdepw(:,:,:,Kmm), ldxios = lwxios ) ! need to compute extrapolation if vvl |
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[6140] | 174 | END IF |
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| 175 | ENDIF |
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| 176 | |
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[9367] | 177 | IF (ln_diurnal) CALL iom_rstput( kt, nitrst, numrow, 'Dsst', x_dsst, ldxios = lwxios ) |
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| 178 | IF(lwxios) CALL iom_swap( cxios_context ) |
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[508] | 179 | IF( kt == nitrst ) THEN |
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[9367] | 180 | IF(.NOT.lwxios) THEN |
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| 181 | CALL iom_close( numrow ) ! close the restart file (only at last time step) |
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| 182 | ELSE |
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| 183 | CALL iom_context_finalize( cwxios_context ) |
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| 184 | ENDIF |
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[4990] | 185 | !!gm IF( .NOT. lk_trdmld ) lrst_oce = .FALSE. |
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| 186 | !!gm not sure what to do here ===>>> ask to Sebastian |
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| 187 | lrst_oce = .FALSE. |
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[5341] | 188 | IF( ln_rst_list ) THEN |
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[11822] | 189 | nrst_lst = MIN(nrst_lst + 1, SIZE(nn_stocklist,1)) |
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| 190 | nitrst = nn_stocklist( nrst_lst ) |
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[5341] | 191 | ENDIF |
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[3] | 192 | ENDIF |
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[508] | 193 | ! |
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[3] | 194 | END SUBROUTINE rst_write |
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| 195 | |
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[4990] | 196 | |
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[4292] | 197 | SUBROUTINE rst_read_open |
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| 198 | !!---------------------------------------------------------------------- |
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| 199 | !! *** ROUTINE rst_read_open *** |
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| 200 | !! |
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[10425] | 201 | !! ** Purpose : Open read files for NetCDF restart |
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[4292] | 202 | !! |
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| 203 | !! ** Method : Use a non-zero, positive value of numror to assess whether or not |
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| 204 | !! the file has already been opened |
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| 205 | !!---------------------------------------------------------------------- |
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[5341] | 206 | LOGICAL :: llok |
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| 207 | CHARACTER(lc) :: clpath ! full path to ocean output restart file |
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[4292] | 208 | !!---------------------------------------------------------------------- |
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[4990] | 209 | ! |
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| 210 | IF( numror <= 0 ) THEN |
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[4292] | 211 | IF(lwp) THEN ! Contol prints |
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| 212 | WRITE(numout,*) |
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[10425] | 213 | WRITE(numout,*) 'rst_read : read oce NetCDF restart file' |
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[4292] | 214 | IF ( snc4set%luse ) WRITE(numout,*) 'rst_read : configured with NetCDF4 support' |
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| 215 | WRITE(numout,*) '~~~~~~~~' |
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| 216 | ENDIF |
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[9367] | 217 | lxios_sini = .FALSE. |
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[5341] | 218 | clpath = TRIM(cn_ocerst_indir) |
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| 219 | IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/' |
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[10425] | 220 | CALL iom_open( TRIM(clpath)//cn_ocerst_in, numror ) |
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[9367] | 221 | ! are we using XIOS to read the data? Part above will have to modified once XIOS |
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| 222 | ! can handle checking if variable is in the restart file (there will be no need to open |
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| 223 | ! restart) |
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| 224 | IF(.NOT.lxios_set) lrxios = lrxios.AND.lxios_sini |
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| 225 | IF( lrxios) THEN |
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| 226 | crxios_context = 'nemo_rst' |
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| 227 | IF( .NOT.lxios_set ) THEN |
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| 228 | IF(lwp) WRITE(numout,*) 'Enable restart reading by XIOS' |
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[9903] | 229 | CALL iom_init( crxios_context, ld_tmppatch = .false. ) |
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[9367] | 230 | lxios_set = .TRUE. |
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| 231 | ENDIF |
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| 232 | ENDIF |
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| 233 | IF( TRIM(Agrif_CFixed()) /= '0' .AND. lrxios) THEN |
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[9903] | 234 | CALL iom_init( crxios_context, ld_tmppatch = .false. ) |
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[9367] | 235 | IF(lwp) WRITE(numout,*) 'Enable restart reading by XIOS for AGRIF' |
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| 236 | lxios_set = .TRUE. |
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| 237 | ENDIF |
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[4292] | 238 | ENDIF |
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[9367] | 239 | |
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[4292] | 240 | END SUBROUTINE rst_read_open |
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| 241 | |
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[5836] | 242 | |
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[10922] | 243 | SUBROUTINE rst_read( Kbb, Kmm ) |
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[3] | 244 | !!---------------------------------------------------------------------- |
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| 245 | !! *** ROUTINE rst_read *** |
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| 246 | !! |
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[10425] | 247 | !! ** Purpose : Read files for NetCDF restart |
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[3] | 248 | !! |
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[1531] | 249 | !! ** Method : Read in restart.nc file fields which are necessary for restart |
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[3] | 250 | !!---------------------------------------------------------------------- |
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[10922] | 251 | INTEGER, INTENT(in) :: Kbb, Kmm ! ocean time level indices |
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[6140] | 252 | REAL(wp) :: zrdt |
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[4292] | 253 | INTEGER :: jk |
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[9367] | 254 | REAL(wp), DIMENSION(jpi, jpj, jpk) :: w3d |
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[3] | 255 | !!---------------------------------------------------------------------- |
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| 256 | |
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[4292] | 257 | CALL rst_read_open ! open restart for reading (if not already opened) |
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[3] | 258 | |
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[544] | 259 | ! Check dynamics and tracer time-step consistency and force Euler restart if changed |
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[746] | 260 | IF( iom_varid( numror, 'rdt', ldstop = .FALSE. ) > 0 ) THEN |
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[9367] | 261 | CALL iom_get( numror, 'rdt', zrdt, ldxios = lrxios ) |
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[544] | 262 | IF( zrdt /= rdt ) neuler = 0 |
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| 263 | ENDIF |
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[6140] | 264 | |
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[10425] | 265 | CALL iom_delay_rst( 'READ', 'OCE', numror ) ! read only ocean delayed global communication variables |
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| 266 | |
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[6140] | 267 | ! Diurnal DSST |
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[9367] | 268 | IF( ln_diurnal ) CALL iom_get( numror, jpdom_autoglo, 'Dsst' , x_dsst, ldxios = lrxios ) |
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[6140] | 269 | IF ( ln_diurnal_only ) THEN |
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| 270 | IF(lwp) WRITE( numout, * ) & |
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| 271 | & "rst_read:- ln_diurnal_only set, setting rhop=rau0" |
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| 272 | rhop = rau0 |
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[9367] | 273 | CALL iom_get( numror, jpdom_autoglo, 'tn' , w3d, ldxios = lrxios ) |
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[10922] | 274 | ts(:,:,1,jp_tem,Kmm) = w3d(:,:,1) |
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[6140] | 275 | RETURN |
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| 276 | ENDIF |
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| 277 | |
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[3680] | 278 | IF( iom_varid( numror, 'ub', ldstop = .FALSE. ) > 0 ) THEN |
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[11027] | 279 | CALL iom_get( numror, jpdom_autoglo, 'ub' , uu(:,:,: ,Kbb), ldxios = lrxios ) ! before fields |
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| 280 | CALL iom_get( numror, jpdom_autoglo, 'vb' , vv(:,:,: ,Kbb), ldxios = lrxios ) |
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[10922] | 281 | CALL iom_get( numror, jpdom_autoglo, 'tb' , ts(:,:,:,jp_tem,Kbb), ldxios = lrxios ) |
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| 282 | CALL iom_get( numror, jpdom_autoglo, 'sb' , ts(:,:,:,jp_sal,Kbb), ldxios = lrxios ) |
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[11027] | 283 | CALL iom_get( numror, jpdom_autoglo, 'sshb' ,ssh(:,: ,Kbb), ldxios = lrxios ) |
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[3680] | 284 | ELSE |
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| 285 | neuler = 0 |
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| 286 | ENDIF |
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| 287 | ! |
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[11027] | 288 | CALL iom_get( numror, jpdom_autoglo, 'un' , uu(:,:,: ,Kmm), ldxios = lrxios ) ! now fields |
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| 289 | CALL iom_get( numror, jpdom_autoglo, 'vn' , vv(:,:,: ,Kmm), ldxios = lrxios ) |
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[10922] | 290 | CALL iom_get( numror, jpdom_autoglo, 'tn' , ts(:,:,:,jp_tem,Kmm), ldxios = lrxios ) |
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| 291 | CALL iom_get( numror, jpdom_autoglo, 'sn' , ts(:,:,:,jp_sal,Kmm), ldxios = lrxios ) |
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[11027] | 292 | CALL iom_get( numror, jpdom_autoglo, 'sshn' ,ssh(:,: ,Kmm), ldxios = lrxios ) |
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[3680] | 293 | IF( iom_varid( numror, 'rhop', ldstop = .FALSE. ) > 0 ) THEN |
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[9367] | 294 | CALL iom_get( numror, jpdom_autoglo, 'rhop' , rhop, ldxios = lrxios ) ! now potential density |
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[3680] | 295 | ELSE |
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[10922] | 296 | CALL eos( ts(:,:,:,:,Kmm), rhd, rhop, gdept(:,:,:,Kmm) ) |
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[3680] | 297 | ENDIF |
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[2528] | 298 | ! |
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[508] | 299 | IF( neuler == 0 ) THEN ! Euler restart (neuler=0) |
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[10922] | 300 | ts (:,:,:,:,Kbb) = ts (:,:,:,:,Kmm) ! all before fields set to now values |
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[11027] | 301 | uu (:,:,: ,Kbb) = uu (:,:,: ,Kmm) |
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| 302 | vv (:,:,: ,Kbb) = vv (:,:,: ,Kmm) |
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| 303 | ssh (:,: ,Kbb) = ssh (:,: ,Kmm) |
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[5836] | 304 | ! |
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[6140] | 305 | IF( .NOT.ln_linssh ) THEN |
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[4689] | 306 | DO jk = 1, jpk |
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[10922] | 307 | e3t(:,:,jk,Kbb) = e3t(:,:,jk,Kmm) |
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[4689] | 308 | END DO |
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| 309 | ENDIF |
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[5836] | 310 | ! |
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[3] | 311 | ENDIF |
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[508] | 312 | ! |
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| 313 | END SUBROUTINE rst_read |
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[473] | 314 | |
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[3] | 315 | !!===================================================================== |
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| 316 | END MODULE restart |
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