[2359] | 1 | ###################################################### |
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| 2 | # Author : Simona Flavoni for NEMO |
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| 3 | # Contact : sflod@locean-ipsl.upmc.fr |
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| 4 | # |
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[2546] | 5 | # ---------------------------------------------------------------------- |
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| 6 | # NEMO/SETTE , NEMO Consortium (2010) |
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| 7 | # Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 8 | # ---------------------------------------------------------------------- |
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| 9 | # |
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[2359] | 10 | # Some scripts called by sette.sh |
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| 11 | # all_functions.sh : all functions used by sette.sh |
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| 12 | ###################################################### |
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| 13 | #set -x |
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[7646] | 14 | #set -o posix |
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[2359] | 15 | #set -u |
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| 16 | #set -e |
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| 17 | #+ |
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| 18 | # |
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| 19 | # ================ |
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| 20 | # all_functions.sh |
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| 21 | # ================ |
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| 22 | # |
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| 23 | # ---------------------------------------------- |
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| 24 | # Set of functions used by sette.sh (NEMO tests) |
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| 25 | # ---------------------------------------------- |
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| 26 | # |
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| 27 | # SYNOPSIS |
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| 28 | # ======== |
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| 29 | # |
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| 30 | # :: |
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| 31 | # |
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[2756] | 32 | # $ ./set_namelist INPUT_NAMELIST VARIABLE VALUE |
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[3294] | 33 | # $ post_test_tidyup |
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[2359] | 34 | # |
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| 35 | # |
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| 36 | # DESCRIPTION |
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| 37 | # =========== |
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| 38 | # |
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[2494] | 39 | # function superegrep |
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[2545] | 40 | # input variable value |
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[2500] | 41 | # |
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[2359] | 42 | # function set_namelist |
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[2545] | 43 | # input namelist_name variable value |
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| 44 | # output namelist |
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[2500] | 45 | # |
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[3294] | 46 | # function post_test_tidyup |
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| 47 | # creates nemo_validation tree, and save output & debug files |
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| 48 | # this function creates tree of validation in NEMO_VALIDATION_DIR as follows : |
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| 49 | # |
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| 50 | # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/REVISION_NUMBER(or DATE)/TEST_NAME |
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| 51 | # |
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| 52 | # NEMO_VALIDATION_DIR : is choosen in param.cfg |
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| 53 | # |
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| 54 | # WCONFIG_NAME : set by makenemo at the moment of compilation |
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| 55 | # |
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| 56 | # WCOMPILER_NAME : set by makenemo at the moment of compilation |
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| 57 | # |
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| 58 | # REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken |
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| 59 | # |
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| 60 | # TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${NEW_CONF} directory ) |
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| 61 | # |
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[2500] | 62 | # EXAMPLES |
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| 63 | # ======== |
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| 64 | # |
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| 65 | # :: |
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| 66 | # |
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[2756] | 67 | # $ ./set_namelist namelist nn_itend 75 |
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[7715] | 68 | # $ ./set_namelist namelist_ice cn_icerst_in \"00101231_restart_ice\" |
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[3294] | 69 | # $ post_test_tidyup |
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[2500] | 70 | # |
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| 71 | # |
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| 72 | # TODO |
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| 73 | # ==== |
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| 74 | # |
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| 75 | # option debug |
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| 76 | # |
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| 77 | # |
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| 78 | # EVOLUTIONS |
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| 79 | # ========== |
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| 80 | # |
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| 81 | # $Id$ |
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| 82 | # |
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| 83 | # * creation |
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[2507] | 84 | #- |
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[2359] | 85 | # function to find namelists parameters |
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| 86 | supergrep () { |
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| 87 | grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" |
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| 88 | } |
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| 89 | |
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[2494] | 90 | usage=" Usage : set_namelist input_namelist variable_name value" |
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[2510] | 91 | usage=" if value is a string ths is neede syntax : ./set_namelist namelist_name var_name \"new_value\" " |
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[2494] | 92 | |
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[12569] | 93 | # sync MYSRC files (input CFG and CFG_ST) |
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| 94 | sync_config() { |
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| 95 | if [ ${SYNC_CONFIGS} == "yes" ]; then |
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| 96 | |
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| 97 | lREF=$3/$1 # reference |
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| 98 | lCFG=$3/$2 # target |
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| 99 | |
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| 100 | echo '-------------------------------------------------------------------------------' |
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| 101 | echo ' SOURCE AND CONFIG FILES SYNCHRONISATION ' |
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| 102 | echo '' |
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| 103 | echo "configuration $lCFG/MY_SRC will be synchronised with $lREF/MY_SRC" |
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| 104 | echo '' |
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| 105 | # synchronise MY_SRC if $lCFG directory exist |
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| 106 | if [ -d $lREF/MY_SRC ] && [ -d $lCFG ] ; then |
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| 107 | |
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| 108 | if [ -d $lCFG/MY_SRC ] ; then |
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| 109 | |
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| 110 | # Manage case number of file in MY_SRC changes |
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| 111 | # find number of file only in $lCFG/MY_SRC |
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| 112 | FCFG=`diff -r $lREF/MY_SRC $lCFG/MY_SRC | grep "Only in $lCFG/MY_SRC" | awk '{print $4}'` |
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| 113 | |
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| 114 | # if more than 0, trigger a cleaning as Makenemo do not properly manage this case. |
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| 115 | if [ ! -z "$FCFG" ]; then |
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| 116 | echo '' |
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| 117 | echo "$lCFG contains a different file list than $lREF :" |
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| 118 | diff -r $lREF/MY_SRC $lCFG/MY_SRC | grep "Only in $lCFG/MY_SRC" | awk '{print $4}' |
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| 119 | echo "Synchronisation is not enough because Makenemo does not handle well case where a file in MY_SRC is removed" |
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| 120 | echo "Therefore, we need to clean $lCFG before starting runing it" |
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| 121 | echo '' |
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| 122 | CLEAN_CONFIGS="yes" |
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| 123 | fi |
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| 124 | fi |
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| 125 | |
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| 126 | # synchronisation $lREF/MY_SRC directory (and delete file in target location if needed) |
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| 127 | rsync -a --delete $lREF/MY_SRC/ $lCFG/MY_SRC |
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| 128 | |
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| 129 | # rsync keep preserve the modification time stamp. |
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| 130 | # To avoid case where a file in MY_SRC is replace by an older file, we touch the file |
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| 131 | touch $lCFG/MY_SRC/* |
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| 132 | fi |
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| 133 | |
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| 134 | echo '' |
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| 135 | echo "configuration $lCFG/EXP00 will be synchronised with $lREF/EXPREF" |
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| 136 | echo "(links are skipped)" |
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| 137 | echo '' |
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| 138 | # synchronize EXPREF |
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| 139 | if [ -d $lREF/EXPREF ] && [ -d $lCFG/EXP00 ] ; then |
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| 140 | rsync -a --no-links $lREF/EXPREF/ $lCFG/EXP00/. |
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| 141 | fi |
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| 142 | echo '-------------------------------------------------------------------------------' |
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| 143 | fi |
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| 144 | } |
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| 145 | |
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| 146 | # clean _ST config (input CFG CFG_ST TYPE (test or ref)) |
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| 147 | clean_config() { |
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| 148 | if [ ${CLEAN_CONFIGS} == "yes" ]; then |
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| 149 | lREF=$1 |
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| 150 | lCFG=$2 |
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| 151 | lTYP=$3 |
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| 152 | echo '' |
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| 153 | echo '-------------------------------------------------------------------------------' |
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| 154 | echo ' CLEANING CONFIGURATION ' |
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| 155 | echo '' |
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| 156 | echo "./makenemo -n $lCFG -a/-r $lREF clean" |
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| 157 | echo '' |
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| 158 | if [ ${lTYP} == 'tests' ]; then |
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| 159 | ./makenemo -n $lCFG -a $lREF clean |
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| 160 | elif [ ${lTYP} == 'cfgs' ]; then |
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| 161 | ./makenemo -n $lCFG -r $lREF clean |
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| 162 | else |
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| 163 | echo 'ERROR in the cleaning process'; exit 42 |
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| 164 | fi |
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| 165 | echo '' |
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| 166 | echo "$lCFG configuration has been cleaned" |
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| 167 | echo '' |
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| 168 | echo '-------------------------------------------------------------------------------' |
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| 169 | fi |
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| 170 | } |
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| 171 | |
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[11161] | 172 | # define validation dir |
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| 173 | set_valid_dir () { |
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[12569] | 174 | REVISION_NB=`${SVN_CMD} info ${SETTE_DIR}/.. | grep "Last Changed Rev" | awk '{print $NF}'` |
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[11161] | 175 | if [ ${#REVISION_NB} -eq 0 ] |
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| 176 | then |
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| 177 | echo "some problems with ${SVN_CMD} info command" |
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| 178 | echo "some problems with ${SVN_CMD} info command" >> ${SETTE_DIR}/output.sette |
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| 179 | REVISION_NB=`date +%Y%m%d` |
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| 180 | echo "put in ${REVISION_NB} date" |
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| 181 | echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette |
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| 182 | else |
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| 183 | echo "value of revision number of NEMOGCM: ${REVISION_NB}" |
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| 184 | fi |
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| 185 | [ `${SVN_CMD} status -q ${SETTE_DIR}/../{cfg,tests,src} | wc -l` -ge 1 ] && REVISION_NB=${REVISION_NB}+ |
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| 186 | NEMO_VALID=${NEMO_VALIDATION_DIR}/W${NEW_CONF}/${CMP_NAM}/${REVISION_NB}/${TEST_NAME} |
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| 187 | } |
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| 188 | |
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| 189 | # clean valid dir (move old ocean_output/run.stat and tracer to avoid checking them in case something wrong happen. |
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| 190 | clean_valid_dir () { |
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| 191 | # set_valid_dir # already done in sette_ref/sette_test |
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| 192 | echo "validation directory is : $NEMO_VALID" |
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| 193 | if [ -d $NEMO_VALID ] ; then |
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| 194 | [ -f ${NEMO_VALID}/ocean.output ] && mv ${NEMO_VALID}/ocean.output ${NEMO_VALID}/ocean.output_old |
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| 195 | [ -f ${NEMO_VALID}/run.stat ] && mv ${NEMO_VALID}/run.stat ${NEMO_VALID}/run.stat_old |
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| 196 | [ -f ${NEMO_VALID}/tracer.stat ] && mv ${NEMO_VALID}/tracer.stat ${NEMO_VALID}/tracer.stat_old |
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| 197 | fi |
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| 198 | } |
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| 199 | |
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[2359] | 200 | # function to set namelists parameters |
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| 201 | set_namelist () { |
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[2511] | 202 | minargcount=3 |
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[2545] | 203 | if [ ${#} -lt ${minargcount} ] |
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| 204 | then |
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[4245] | 205 | echo "not enough arguments for set_namelist" |
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[2511] | 206 | echo "${usage}" |
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| 207 | exit 1 |
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[2545] | 208 | fi |
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[2511] | 209 | unset minargcount |
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[2637] | 210 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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[2545] | 211 | touch ${SETTE_DIR}/output.sette |
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| 212 | fi |
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[2562] | 213 | |
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[2545] | 214 | echo "executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 215 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 216 | |
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[3294] | 217 | VAR_NAME=$( supergrep $2 ${EXE_DIR}/$1 ) |
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[2637] | 218 | if [ ${#VAR_NAME} -eq 0 ] |
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| 219 | then |
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[4147] | 220 | echo "doing \"set_namelist $@\". " >> ${SETTE_DIR}/output.sette |
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| 221 | echo "variable: \"$2\" not found in \"${EXE_DIR}/$1\" " >> ${SETTE_DIR}/output.sette |
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| 222 | NAMREF=$( basename $1 _cfg )_ref |
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| 223 | echo "doing more : search in ${EXE_DIR}/$NAMREF " >> ${SETTE_DIR}/output.sette |
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| 224 | VAR_NAME=$( supergrep $2 ${EXE_DIR}/$NAMREF ) |
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| 225 | if [ ${#VAR_NAME} -eq 0 ] |
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| 226 | then |
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| 227 | echo " variable $VAR_NAME not found in ${EXE_DIR}/$1 nor in ${EXE_DIR}/$NAMREF " |
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| 228 | echo " check your variable name " |
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| 229 | echo "exit" |
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| 230 | echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 231 | echo "....." >> ${SETTE_DIR}/output.sette |
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| 232 | exit 1 |
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| 233 | fi |
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| 234 | LINEVAR=$( grep -s -n "$VAR_NAME" ${EXE_DIR}/$NAMREF | awk -F: '{ { print $1} }' ) |
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| 235 | echo " $VAR_NAME found in ${EXE_DIR}/$NAMREF at line $LINEVAR " >> ${SETTE_DIR}/output.sette |
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[12569] | 236 | |
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[4147] | 237 | # search for namelist group name |
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| 238 | NAMGRP=$( head -n$LINEVAR ${EXE_DIR}/$NAMREF | grep --line-buffered "^&nam" | tail -1 | awk -F" " '{ { print $1} }' ) |
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| 239 | echo " variable $VAR_NAME will be added in $NAMGRP namelist-group of namelist file ${EXE_DIR}/$1 " >> ${SETTE_DIR}/output.sette |
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[12569] | 240 | |
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| 241 | # check if namelist group present in namelist_cfg |
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| 242 | # if missing group is added at the end of namelist_cfg |
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| 243 | NGRP=$(grep ${NAMGRP} ${EXE_DIR}/$1 | wc -l ) |
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| 244 | if [ ${NGRP} -eq 0 ]; then |
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| 245 | echo '' >> ${SETTE_DIR}/output.sette |
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| 246 | echo "+++++ Group ${NAMGRP} containing ${2} is missing in ${EXE_DIR}/$1 +++++ " >> ${SETTE_DIR}/output.sette |
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| 247 | echo "+++++ Group ${NAMGRP} is added in ${EXE_DIR}/$1 +++++ " >> ${SETTE_DIR}/output.sette |
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| 248 | echo '' >> ${SETTE_DIR}/output.sette |
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| 249 | echo "&${NAMGRP}" >> ${EXE_DIR}/$1 |
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| 250 | echo "/" >> ${EXE_DIR}/$1 |
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| 251 | fi |
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| 252 | |
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[4147] | 253 | # Add $VARNAME in namelist file ${EXE_DIR}/$1 in namelist group $NAMGRP |
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| 254 | # on mac osx, replace sed --posix by gsed (available with mac port) |
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| 255 | sed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp || gsed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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[12569] | 256 | |
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[4147] | 257 | # if file not empty replace ${EXE_DIR}/$1 |
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[12569] | 258 | if [ -s ${EXE_DIR}/$1.tmp ] ; then |
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[4147] | 259 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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| 260 | else |
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| 261 | echo "file ${EXE_DIR}/$1.tmp is empty. sed command went wrong "; exit 200 |
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| 262 | fi |
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[2637] | 263 | fi |
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[4147] | 264 | |
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[11161] | 265 | ARGS_LST="${@:3}" |
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| 266 | sed -e "s;${VAR_NAME}.*;${VAR_NAME};" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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[3294] | 267 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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[11161] | 268 | sed -e "s;${VAR_NAME};$2=${ARGS_LST};" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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[3294] | 269 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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[2583] | 270 | |
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[2545] | 271 | echo "finished script : set_namelist $@" >> ${SETTE_DIR}/output.sette |
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| 272 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 273 | echo " " >> ${SETTE_DIR}/output.sette |
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[2359] | 274 | } |
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[3294] | 275 | |
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[4245] | 276 | |
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[3294] | 277 | # function to tidy up after each test and populate the NEMO_VALIDATION store |
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| 278 | post_test_tidyup () { |
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[11161] | 279 | # Save current exit status of caller script |
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| 280 | RUN_STATUS=$? |
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| 281 | echo "Exit status: ${RUN_STATUS}" |
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[3294] | 282 | # |
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| 283 | # requires the following variables defined and exported from the calling script: |
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| 284 | # SETTE_DIR |
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| 285 | # INPUT_DIR |
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| 286 | # EXE_DIR |
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| 287 | # CONFIG_DIR |
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| 288 | # NEMO_VALIDATION_DIR |
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| 289 | # NEW_CONF |
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| 290 | # CMP_NAM |
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| 291 | # TEST_NAME |
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| 292 | echo "SETTE directory is : ${SETTE_DIR}" |
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| 293 | echo "INPUT directory is : ${INPUT_DIR}" |
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| 294 | echo "EXECUTION directory is : ${EXE_DIR}" |
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| 295 | echo "CONFIG directory is : ${CONFIG_DIR}" |
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[11161] | 296 | echo "VALIDATION directory is : ${NEMO_VALID}" |
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[3294] | 297 | echo "NEW CONFIGURATION is : ${NEW_CONF}" |
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| 298 | echo "COMPILER is : ${CMP_NAM}" |
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| 299 | echo "TEST is : ${TEST_NAME}" |
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[8468] | 300 | echo "TOOLS directory is : ${TOOLS_DIR}" |
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[3294] | 301 | ################################################################ |
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| 302 | # SMALL DEBUG |
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[11161] | 303 | EXIT_STATUS=${RUN_STATUS} |
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[4147] | 304 | if [ ! -r ${EXE_DIR}/ocean.output ] |
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| 305 | then |
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| 306 | grep "E R R O R" ${EXE_DIR}/ocean.output && echo "Some ERRORS at execution time, see ${EXE_DIR}/ocean.output" |
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[11161] | 307 | EXIT_STATUS=2 |
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| 308 | # exit 2 Error now catch in the report |
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[4147] | 309 | fi |
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| 310 | |
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[3294] | 311 | if [ ! -r ${EXE_DIR}/time.step ] |
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| 312 | then |
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| 313 | echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette |
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| 314 | echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette |
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[11161] | 315 | EXIT_STATUS=1 |
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| 316 | # exit 1 Error now catch in the report |
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[3294] | 317 | else |
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| 318 | echo "file time.step exists" >> ${SETTE_DIR}/output.sette |
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[4147] | 319 | echo "execution of model time step loop started" >> ${SETTE_DIR}/output.sette |
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[3294] | 320 | fi |
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[4147] | 321 | |
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[3294] | 322 | ################################################################ |
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| 323 | |
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| 324 | ################################################################ |
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[11161] | 325 | # |
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[3294] | 326 | # Creation of NEMO_VALIDATION tree |
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[11161] | 327 | # set_valid_dir already done in sette_reference_config |
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| 328 | mkdir -p ${NEMO_VALIDATION_DIR} |
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| 329 | if [ -d ${NEMO_VALIDATION_DIR} ] ; then |
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| 330 | echo "created ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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[3294] | 331 | else |
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[11161] | 332 | echo "problems in creating ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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[3294] | 333 | echo "EXIT," |
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| 334 | exit 1 |
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| 335 | fi |
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[11161] | 336 | # |
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| 337 | # Exit before populating validation directory if the model run has |
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| 338 | # returned a non-zero exit status |
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| 339 | # On CRAY NEMO exit is not the expected 999 or 123456 (let this bloc in case useful later on). |
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| 340 | # case ${EXIT_STATUS} in |
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| 341 | # 0|123456|999) echo " NEMO finished with exit code $EXIT_STATUS " ; post_test_tidyup ;; |
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| 342 | # *) echo " NEMO abort on an unexpected error (segmentation fault or whatever) $EXIT_STATUS " |
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| 343 | # esac |
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| 344 | |
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| 345 | [ ${EXIT_STATUS} -ne 0 ] && exit ${EXIT_STATUS} |
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| 346 | # |
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| 347 | # Save output & debug files in NEMO_VALIDATION tree |
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[9019] | 348 | echo "saving ocean & ice output, run.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette |
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[3294] | 349 | echo " " >> ${SETTE_DIR}/output.sette |
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[11161] | 350 | [ -f ${EXE_DIR}/ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALIDATION_DIR}/. |
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| 351 | [ -f ${EXE_DIR}/run.stat ] && cp ${EXE_DIR}/*run.stat ${NEMO_VALIDATION_DIR}/. |
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| 352 | [ -f ${EXE_DIR}/output.namelist.dyn ] && cp ${EXE_DIR}/*output.nam* ${NEMO_VALIDATION_DIR}/. |
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| 353 | [ -f ${EXE_DIR}/tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALIDATION_DIR}/. |
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[4147] | 354 | |
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[11161] | 355 | if [ -n "$(ls ${NEMO_VALIDATION_DIR}/*run*)" ] ; then |
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| 356 | echo "moved run.stat in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 357 | echo "moved run.stat in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 358 | else |
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[11161] | 359 | echo "problem in looking for run.stat file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 360 | echo "run.stat IS NOT in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 361 | fi |
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[11161] | 362 | if [ -n "$(ls ${NEMO_VALIDATION_DIR}/*ocean.output*)" ] ; then |
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| 363 | echo "moved ocean.output in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 364 | echo "moved ocean.output in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 365 | else |
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[11161] | 366 | echo "problem in looking for ocean.output file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 367 | echo "ocean.output IS NOT in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 368 | fi |
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[11161] | 369 | if [ -n "$(ls ${NEMO_VALIDATION_DIR}/*tracer.stat*)" ] ; then |
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| 370 | echo "moved tracer.stat in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 371 | echo "moved tracer.stat in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 372 | else |
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[11161] | 373 | echo "problem in looking for tracer.stat file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette |
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| 374 | echo "tracer.stat IS NOT in ${NEMO_VALIDATION_DIR} directory" |
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[3294] | 375 | fi |
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| 376 | } |
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[4245] | 377 | |
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| 378 | ############################################################# |
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| 379 | # extra functions to manipulate settings in the iodef.xml file |
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| 380 | # |
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| 381 | # Examples: |
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| 382 | # set_xio_file_type iodef.xml one_file |
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| 383 | # set_xio_using_server iodef.xml true |
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| 384 | # set_xio_buffer_size iodef.xml 50000000 |
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[7646] | 385 | # set_xio_field_defs iodef.xml |
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[4245] | 386 | # |
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| 387 | ############################################################# |
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| 388 | |
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| 389 | usage2=" Usage : set_xio_file_type input_iodef.xml one_file||multiple_file" |
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| 390 | usage3=" Usage : set_xio_using_server input_iodef.xml true||false" |
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| 391 | usage4=" Usage : set_xio_buffer_size input_iodef.xml int_buffer_size" |
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[7646] | 392 | usage5=" Usage : set_xio_field_defs input_iodef.xml" |
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[4245] | 393 | |
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| 394 | set_xio_file_type () { |
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| 395 | minargcount=2 |
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| 396 | if [ ${#} -lt ${minargcount} ] |
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| 397 | then |
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| 398 | echo "not enough arguments for set_xio_file_type" |
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| 399 | echo "${usage2}" |
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| 400 | exit 1 |
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| 401 | fi |
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| 402 | if [ $2 != "one_file" ] && [ $2 != "multiple_file" ] |
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| 403 | then |
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| 404 | echo "unrecognised argument for set_xio_file_type" |
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| 405 | echo "${usage2}" |
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| 406 | echo $2 |
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| 407 | exit 1 |
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| 408 | fi |
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| 409 | unset minargcount |
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| 410 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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| 411 | touch ${SETTE_DIR}/output.sette |
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| 412 | fi |
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| 413 | |
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| 414 | echo "executing script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette |
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| 415 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 416 | |
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| 417 | VAR_NAME=$( grep "^.*<.*file_definition.*type.*=" ${EXE_DIR}/$1 | sed -e "s% *\!.*%%" ) |
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| 418 | if [ ${#VAR_NAME} -eq 0 ] |
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| 419 | then |
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| 420 | echo "doing \"set_xio_file_type $@\". " |
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| 421 | echo "xml_tag: file_definition with variable: type is empty" |
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| 422 | echo "confirm that an appropriate file_definition is in \"${EXE_DIR}/$1\" " |
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| 423 | echo "exit" |
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| 424 | echo "error in executing script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette |
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| 425 | echo "....." >> ${SETTE_DIR}/output.sette |
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| 426 | exit 1 |
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| 427 | fi |
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| 428 | if [ $2 == "one_file" ] |
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| 429 | then |
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| 430 | sed -e "s:multiple_file:one_file:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 431 | else |
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| 432 | sed -e "s:one_file:multiple_file:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 433 | fi |
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| 434 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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| 435 | |
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| 436 | echo "finished script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette |
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| 437 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 438 | echo " " >> ${SETTE_DIR}/output.sette |
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| 439 | } |
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| 440 | |
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| 441 | set_xio_using_server () { |
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| 442 | minargcount=2 |
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| 443 | if [ ${#} -lt ${minargcount} ] |
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| 444 | then |
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| 445 | echo "not enough arguments for set_xio_using_server" |
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| 446 | echo "${usage2}" |
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| 447 | exit 1 |
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| 448 | fi |
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| 449 | if [ $2 != "true" ] && [ $2 != "false" ] |
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| 450 | then |
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| 451 | echo "unrecognised argument for set_xio_using_server" |
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| 452 | echo "${usage2}" |
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| 453 | echo $2 |
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| 454 | exit 1 |
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| 455 | fi |
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| 456 | unset minargcount |
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| 457 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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| 458 | touch ${SETTE_DIR}/output.sette |
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| 459 | fi |
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| 460 | |
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| 461 | echo "executing script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette |
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| 462 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 463 | |
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[7646] | 464 | VAR_NAME=$( grep "^.*<.*variable id.*=.*using_server.*=.*bool" ${EXE_DIR}/$1 | sed -e "s% *\!.*%%" ) |
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[4245] | 465 | if [ ${#VAR_NAME} -eq 0 ] |
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| 466 | then |
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| 467 | echo "doing \"set_xio_using_server $@\". " |
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[7646] | 468 | echo "xml_tag: "variable id=using_server" with variable: bool is empty" |
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[4245] | 469 | echo "confirm that an appropriate variable id is in \"${EXE_DIR}/$1\" " |
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| 470 | echo "exit" |
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| 471 | echo "error in executing script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette |
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| 472 | echo "....." >> ${SETTE_DIR}/output.sette |
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| 473 | exit 1 |
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| 474 | fi |
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| 475 | if [ $2 == "false" ] |
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| 476 | then |
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| 477 | sed -e "/using_server/s:true:false:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 478 | export USING_MPMD=no |
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| 479 | else |
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| 480 | sed -e "/using_server/s:false:true:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 481 | export USING_MPMD=yes |
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| 482 | fi |
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| 483 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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| 484 | |
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| 485 | echo "finished script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette |
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| 486 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 487 | echo " " >> ${SETTE_DIR}/output.sette |
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| 488 | } |
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| 489 | |
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| 490 | set_xio_buffer_size () { |
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| 491 | minargcount=2 |
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| 492 | if [ ${#} -lt ${minargcount} ] |
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| 493 | then |
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| 494 | echo "not enough arguments for set_xio_buffer_size" |
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| 495 | echo "${usage4}" |
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| 496 | exit 1 |
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| 497 | fi |
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| 498 | unset minargcount |
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| 499 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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| 500 | touch ${SETTE_DIR}/output.sette |
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| 501 | fi |
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| 502 | |
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| 503 | echo "executing script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette |
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| 504 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 505 | |
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| 506 | VAR_NAME=$( grep "^.*<.*variable id.*=.*buffer_size.*=.*integer" ${EXE_DIR}/$1 | sed -e "s% *\!.*%%" ) |
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| 507 | if [ ${#VAR_NAME} -eq 0 ] |
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| 508 | then |
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| 509 | echo "doing \"set_xio_buffer_size $@\". " |
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| 510 | echo "xml_tag: "variable id=buffer_size" with variable: integer is empty" |
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| 511 | echo "confirm that an appropriate variable id is in \"${EXE_DIR}/$1\" " |
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| 512 | echo "exit" |
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| 513 | echo "error in executing script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette |
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| 514 | echo "....." >> ${SETTE_DIR}/output.sette |
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| 515 | exit 1 |
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| 516 | fi |
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| 517 | sed -e "/buffer_size/s:>.*<:>$2<:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp |
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| 518 | mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 |
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| 519 | |
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| 520 | echo "finished script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette |
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| 521 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 522 | echo " " >> ${SETTE_DIR}/output.sette |
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| 523 | } |
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| 524 | |
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[7646] | 525 | set_xio_field_defs () { |
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| 526 | minargcount=1 |
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| 527 | if [ ${#} -lt ${minargcount} ] |
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| 528 | then |
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| 529 | echo "not enough arguments for set_xio_field_defs" |
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| 530 | echo "${usage5}" |
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| 531 | exit 1 |
---|
| 532 | fi |
---|
| 533 | unset minargcount |
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| 534 | if [ ! -f ${SETTE_DIR}/output.sette ] ; then |
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| 535 | touch ${SETTE_DIR}/output.sette |
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| 536 | fi |
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| 537 | |
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| 538 | echo "executing script : set_xio_field_defs $@" >> ${SETTE_DIR}/output.sette |
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| 539 | echo "################" >> ${SETTE_DIR}/output.sette |
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| 540 | |
---|
| 541 | |
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[9576] | 542 | [ -f ${EXE_DIR}/field_def_nemo-oce.xml ] || sed -i '/field_def_nemo-oce/d' $1 |
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| 543 | [ -f ${EXE_DIR}/field_def_nemo-ice.xml ] || sed -i '/field_def_nemo-ice/d' $1 |
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[7646] | 544 | [ -f ${EXE_DIR}/field_def_nemo-pisces.xml ] || sed -i '/field_def_nemo-pisces/d' $1 |
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| 545 | |
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| 546 | echo "finished script : set_xio_field_defs $@" >> ${SETTE_DIR}/output.sette |
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| 547 | echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette |
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| 548 | echo " " >> ${SETTE_DIR}/output.sette |
---|
| 549 | } |
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