Changeset 3463 for branches/2012/dev_r3438_LOCEAN15_PISLOB
- Timestamp:
- 2012-09-04T11:54:24+02:00 (12 years ago)
- Location:
- branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG
- Files:
-
- 3 edited
-
ORCA2_LIM_PISCES/EXP00/iodef.xml (modified) (6 diffs)
-
ORCA2_LIM_PISCES/EXP00/namelist_pisces (modified) (9 diffs)
-
ORCA2_OFF_PISCES/EXP00/iodef.xml (modified) (3 diffs)
Legend:
- Unmodified
- Added
- Removed
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branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml
r3295 r3463 221 221 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 222 222 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 223 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" 223 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 224 224 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 225 225 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> … … 240 240 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 241 241 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 242 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" />243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" />242 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 243 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 244 244 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 245 245 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> … … 249 249 250 250 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 262 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 263 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 264 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 265 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 266 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 267 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 268 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 269 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 270 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 271 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 272 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 273 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 274 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 275 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 276 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 277 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 278 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 279 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 280 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 281 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 282 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 283 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 284 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 285 <field id="Dpo2" description="Delta O2" unit="uatm" /> 286 <field id="Heup" description="Euphotic layer depth" unit="m" /> 287 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 251 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 252 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 253 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 254 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 255 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 256 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 257 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 258 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 259 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 260 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 261 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 262 <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> 263 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 264 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 265 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> 266 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> 267 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 268 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 269 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> 270 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 271 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 272 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 273 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 274 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 275 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 276 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 277 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 278 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 279 <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> 280 <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> 281 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> 282 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> 283 <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> 284 <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> 285 <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> 286 <field id="pdust" description="dust concentration" unit="g/L" /> 287 <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> 288 <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> 289 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> 290 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> 291 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> 292 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 293 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 294 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 295 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 296 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 297 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 298 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 299 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 300 <field id="Dpo2" description="Delta O2" unit="uatm" /> 301 <field id="Heup" description="Euphotic layer depth" unit="m" /> 302 <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> 303 <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> 288 304 </group> 289 305 … … 507 523 <field ref="CO3" /> 508 524 <field ref="CO3sat" /> 509 <field ref="PAR" 525 <field ref="PAR" /> 510 526 <field ref="PPPHY" /> 511 527 <field ref="PPPHY2" /> … … 515 531 <field ref="PFeN" /> 516 532 <field ref="PFeD" /> 533 <field ref="xfracal" /> 517 534 <field ref="PCAL" /> 518 535 <field ref="DCAL" /> 519 <field ref="GRAZ" /> 520 <field ref="Mumax" /> 521 <field ref="MuN" /> 522 <field ref="MuD" /> 523 <field ref="MuNlight" /> 524 <field ref="MuDlight" /> 525 <field ref="LNnut" /> 526 <field ref="LDnut" /> 527 <field ref="LNFe" /> 528 <field ref="LDFe" /> 529 <field ref="LNlight" /> 530 <field ref="LDlight" /> 536 <field ref="GRAZ1" /> 537 <field ref="GRAZ2" /> 531 538 <field ref="EPC100" /> 532 539 <field ref="EPFE100" /> … … 540 547 <field ref="Heup" /> 541 548 <field ref="Irondep" /> 549 <field ref="Ironsed" /> 550 <field ref="Ironice" /> 542 551 <field ref="Nfix" /> 552 <field ref="MuN" /> 553 <field ref="MuD" /> 554 <field ref="LNnut" /> 555 <field ref="LDnut" /> 556 <field ref="LNFe" /> 557 <field ref="LDFe" /> 558 <field ref="LNlight" /> 559 <field ref="LDlight" /> 560 <field ref="pdust" /> 561 <field ref="Fe2" /> 562 <field ref="Fe3" /> 563 <field ref="FeL1" /> 564 <field ref="FeL2" /> 565 <field ref="FeP" /> 566 <field ref="TL1" /> 567 <field ref="TL2" /> 568 <field ref="Sdenit" /> 569 <field ref="Totlig" /> 543 570 </file> 544 571 -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_pisces
r3418 r3463 40 40 ferat3 = 10.E-6 ! Fe/C in zooplankton 41 41 wsbio2 = 30. ! Big particles sinking speed 42 niter1max = 1 ! Maximum number of iterations for POC 43 niter2max = 1 ! Maximum number of iterations for GOC 42 44 / 43 45 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 44 46 &nampislim ! parameters for nutrient limitations 45 47 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 46 conc0 = 1.e-6 ! Phosphate half saturation 47 conc1 = 8E-6 ! Phosphate half saturation for diatoms 48 conc2 = 1E-9 ! Iron half saturation for phyto 49 conc2m = 3E-9 ! Max iron half saturation for phyto 50 conc3 = 3E-9 ! Iron half saturation for diatoms 51 conc3m = 8E-9 ! Maxi iron half saturation for diatoms 48 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 49 concdno3 = 3.E-6 ! Phosphate half saturation for diatoms 50 concnnh4 = 1.E-7 ! NH4 half saturation for phyto 51 concdnh4 = 3.E-7 ! NH4 half saturation for diatoms 52 concnfer = 1.E-9 ! Iron half saturation for phyto 53 concdfer = 3.E-9 ! Iron half saturation for diatoms 54 concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria 55 concbnh4 = 2.5E-8 ! NH4 half saturation for phyto 56 concbno3 = 2.5E-7 ! Phosphate half saturation for diatoms 52 57 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 53 58 xsizephy = 1.E-6 ! Minimum size criteria for phyto 54 concnnh4 = 1.E-7 ! NH4 half saturation for phyto55 concdnh4 = 8.E-7 ! NH4 half saturationfor diatoms59 xsizern = 3.0 ! Size ratio for nanophytoplankton 60 xsizerd = 3.0 ! Size ratio for diatoms 56 61 xksi1 = 2.E-6 ! half saturation constant for Si uptake 57 xksi2 = 3.33E-6 ! half saturation constant for Si/C62 xksi2 = 20E-6 ! half saturation constant for Si/C 58 63 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 59 concfebac = 1.E-11 ! Half-saturation for Fe limitation of Bacteria60 64 qnfelim = 7.E-6 ! Optimal quota of phyto 61 65 qdfelim = 7.E-6 ! Optimal quota of diatoms 62 caco3r = 0.16 ! mean rain ratio 63 / 66 caco3r = 0.3 ! mean rain ratio 67 / 68 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 69 &nampisopt ! parameters for optics 70 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 71 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 72 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 73 sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' 74 cn_dir = './' ! root directory for the location of the dynamical files 75 ln_varpar = .true. ! boolean for PAR variable 76 parlux = 0.43 ! Fraction of shortwave as PAR 77 / 64 78 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 65 79 &nampisprod ! parameters for phytoplankton growth … … 69 83 excret = 0.05 ! excretion ratio of phytoplankton 70 84 excret2 = 0.05 ! excretion ratio of diatoms 71 ln_newprod = .true. ! Enable new parame. of production (T/F)85 ln_newprod = .true. ! Enable new parame. of production (T/F) 72 86 bresp = 0.00333 ! Basal respiration rate 73 87 chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton 74 88 chlcdm = 0.05 ! Minimum Chl/C in diatoms 75 chlcmin = 0.00 33! Maximum Chl/c in phytoplankton89 chlcmin = 0.004 ! Maximum Chl/c in phytoplankton 76 90 fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton 77 91 fecdm = 40E-6 ! Minimum Fe/C in diatoms 78 grosip = 0.15 1! mean Si/C ratio92 grosip = 0.159 ! mean Si/C ratio 79 93 / 80 94 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 81 95 &nampismort ! parameters for phytoplankton sinks 82 96 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 83 wchl = 0.001 ! quadratic mortality of phytoplankton 84 wchld = 0.02 ! maximum quadratic mortality of diatoms 97 wchl = 0.01 ! quadratic mortality of phytoplankton 98 wchld = 0.01 ! maximum quadratic mortality of diatoms 99 wchldm = 0.03 ! maximum quadratic mortality of diatoms 85 100 mprat = 0.01 ! phytoplankton mortality rate 86 101 mprat2 = 0.01 ! Diatoms mortality rate … … 90 105 &nampismes ! parameters for mesozooplankton 91 106 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 92 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts93 grazrat2 = 0.7 107 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 108 grazrat2 = 0.75 ! maximal mesozoo grazing rate 94 109 resrat2 = 0.005 ! exsudation rate of mesozooplankton 95 110 mzrat2 = 0.03 ! mesozooplankton mortality rate … … 102 117 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 103 118 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 104 xthresh2 = 2E-7! Food threshold for grazing119 xthresh2 = 3E-7 ! Food threshold for grazing 105 120 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 106 121 epsher2 = 0.3 ! Efficicency of Mesozoo growth … … 115 130 grazrat = 3.0 ! maximal zoo grazing rate 116 131 resrat = 0.03 ! exsudation rate of zooplankton 117 mzrat = 0.00 1! zooplankton mortality rate132 mzrat = 0.004 ! zooplankton mortality rate 118 133 xpref2c = 0.1 ! Microzoo preference for POM 119 134 xpref2p = 1. ! Microzoo preference for Nanophyto … … 122 137 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 123 138 xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton 124 xthresh = 2.E-7 ! Food threshold for feeding139 xthresh = 3.E-7 ! Food threshold for feeding 125 140 xkgraz = 20.E-6 ! half sturation constant for grazing 126 141 epsher = 0.3 ! Efficiency of microzoo growth … … 129 144 / 130 145 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 146 &nampisfer ! parameters for iron chemistry 147 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 148 ln_fechem = .false. ! complex iron chemistry ( T/F ) 149 ln_ligvar = .true. ! variable ligand concentration 150 xlam1 = 0.005 ! scavenging rate of Iron 151 xlamdust = 100.0 ! Scavenging rate of dust 152 ligand = 0.6E-9 ! Ligands concentration 153 / 154 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 131 155 &nampisrem ! parameters for remineralization 132 156 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 133 xremik = 0. 25 ! remineralization rate of DOC157 xremik = 0.35 ! remineralization rate of DOC 134 158 xremip = 0.025 ! remineralisation rate of POC 135 159 nitrif = 0.05 ! NH4 nitrification rate 136 160 xsirem = 0.003 ! remineralization rate of Si 137 xsiremlab = 0.025 ! fast remineralization rate of Si 138 xsilab = 0.31 ! Fraction of labile biogenic silica 139 xlam1 = 0.005 ! scavenging rate of Iron 161 xsiremlab = 0.03 ! fast remineralization rate of Si 162 xsilab = 0.5 ! Fraction of labile biogenic silica 140 163 oxymin = 1.E-6 ! Half-saturation constant for anoxia 141 ligand = 0.6E-9 ! Ligands concentration142 164 / 143 165 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 148 170 / 149 171 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 150 &nampiss ed! parameters for inputs deposition172 &nampissbc ! parameters for inputs deposition 151 173 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 152 174 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 153 175 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 154 176 sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' 155 sn_riverdic = 'river.orca' , -12 , 'riverdic' , .false. , .true. , 'yearly' , '' , '' 156 sn_riverdoc = 'river.orca' , -12 , 'riverdoc' , .false. , .true. , 'yearly' , '' , '' 177 sn_solub = 'solubility.orca' , -12 , 'solubility1' , .false. , .true. , 'yearly' , '' , '' 178 sn_riverdic = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , '' 179 sn_riverdoc = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , '' 180 sn_riverdin = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , '' 181 sn_riverdon = 'river.orca' , 120 , 'riverdon' , .true. , .true. , 'yearly' , '' , '' 182 sn_riverdip = 'river.orca' , 120 , 'riverdip' , .true. , .true. , 'yearly' , '' , '' 183 sn_riverdop = 'river.orca' , 120 , 'riverdop' , .true. , .true. , 'yearly' , '' , '' 184 sn_riverdsi = 'river.orca' , 120 , 'riverdsi' , .true. , .true. , 'yearly' , '' , '' 157 185 sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' 158 186 sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , '' 187 sn_hydrofe = 'hydrofe' , -12 , 'epsdb' , .false. , .true. , 'yearly' , '' , '' 159 188 ! 160 189 cn_dir = './' ! root directory for the location of the dynamical files 161 190 ln_dust = .true. ! boolean for dust input from the atmosphere 162 ln_river = .false. ! boolean for river input of nutrients 191 ln_solub = .true. ! boolean for variable solubility of atm. Iron 192 ln_river = .true. ! boolean for river input of nutrients 163 193 ln_ndepo = .true. ! boolean for atmospheric deposition of N 164 194 ln_ironsed = .true. ! boolean for Fe input from sediments 195 ln_ironice = .true. ! boolean for Fe input from sea ice 196 ln_hydrofe = .false. ! boolean for from hydrothermal vents 165 197 sedfeinput = 1E-9 ! Coastal release of Iron 166 198 dustsolub = 0.02 ! Solubility of the dust 167 wdust = 2.0 ! Dust sinking speed 199 wdust = 2.0 ! Dust sinking speed 200 icefeinput = 10E-9 ! Iron concentration in sea ice 168 201 nitrfix = 1E-7 ! Nitrogen fixation rate 169 202 diazolight = 50. ! Diazotrophs sensitivity to light (W/m2) 170 203 concfediaz = 1.E-10 ! Diazotrophs half-saturation Cste for Iron 204 hratio = 9.E-5 ! Fe to 3He ratio assumed for vent iron supply 171 205 / 172 206 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 175 209 xkr_eta = 1.17 ! Sinking exponent 176 210 xkr_zeta = 2.28 ! N content exponent 211 xkr_ncontent = 5.7E-6 ! N content factor 177 212 xkr_mass_min = 0.0002 ! Minimum mass for Aggregates 178 213 xkr_mass_max = 1. ! Maximum mass for Aggregates -
branches/2012/dev_r3438_LOCEAN15_PISLOB/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
r3447 r3463 19 19 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 20 20 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 22 22 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 23 23 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> … … 38 38 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 39 39 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" />41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" />40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 42 42 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 43 43 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> … … 47 47 48 48 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 49 <field id="PH" description="PH" 50 <field id="CO3" description="Bicarbonates" 51 <field id="CO3sat" description="CO3 saturation" 52 <field id="PAR" description="Photosynthetically Available Radiation" 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s"axis_ref="deptht" />54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s"axis_ref="deptht" />55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s"axis_ref="deptht" />56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s"axis_ref="deptht" />57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s"axis_ref="deptht" />58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s"axis_ref="deptht" />59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s"axis_ref="deptht" />60 <field id="xfracal" description="Calcifying fraction" 61 <field id="PCAL" description="Calcite production" unit="molC/m3/s"axis_ref="deptht" />62 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s"axis_ref="deptht" />63 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s"axis_ref="deptht" />64 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" 65 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" 66 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" 67 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s"axis_ref="deptht" />68 <field id="Mumax" description="Maximum growth rate" 69 <field id="MuN" description="Realized growth rate for nanophyto" 70 <field id="MuD" description="Realized growth rate for diatomes" 71 <field id="LNnut" description="Nutrient limitation term in Nanophyto" 72 <field id="LDnut" description="Nutrient limitation term in Diatoms" 73 <field id="LNFe" description="Iron limitation term in Nanophyto" 74 <field id="LDFe" description="Iron limitation term in Diatoms" 75 <field id="LNlight" description="Light limitation term in Nanophyto" 76 <field id="LDlight" description="Light limitation term in Diatoms" 77 <field id="Fe2" description="Iron II concentration" unit="nmol/L"axis_ref="deptht" />78 <field id="Fe3" description="Iron III concentration" unit="nmol/L"axis_ref="deptht" />79 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L"axis_ref="deptht" />80 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L"axis_ref="deptht" />81 <field id="FeP" description="Precipitated Iron III" unit="nmol/L"axis_ref="deptht" />82 <field id="TL1" description="Total L1 concentration" unit="nmol/L"axis_ref="deptht" />83 <field id="TL2" description="Total L2 concentration" unit="nmol/L"axis_ref="deptht" />84 <field id="pdust" description="dust concentration" unit="g/L"/>85 <field id="Totlig" description="Total ligand concentation" unit="nmol/L"axis_ref="deptht" />86 <field id="Biron" description="Bioavailable iron" unit="nmol/L"axis_ref="deptht" />87 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s"/>88 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s"/>89 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s"/>90 <field id="EPC100" description="Export of carbon particles at 100 m" 91 <field id="EPFE100" description="Export of biogenic iron at 100 m" 92 <field id="EPSI100" description="Export of Silicate at 100 m" 93 <field id="EPCAL100" description="Export of Calcite at 100 m" 94 <field id="Cflx" description="DIC flux" 95 <field id="Oflx" description="Oxygen flux" 96 <field id="Kg" description="Gas transfer" 97 <field id="Dpco2" description="Delta CO2" 98 <field id="Dpo2" description="Delta O2" 99 <field id="Heup" description="Euphotic layer depth" 100 <field id="Irondep" description="Iron deposition from dust" 101 <field id="Ironsed" description="Iron deposition from sediment" 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 60 <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> 61 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 62 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 63 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> 64 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> 65 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 66 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 67 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> 68 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 69 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 70 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 71 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 72 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 73 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 74 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 75 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 76 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 77 <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> 78 <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> 79 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> 80 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> 81 <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> 82 <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> 83 <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> 84 <field id="pdust" description="dust concentration" unit="g/L" /> 85 <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> 86 <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> 87 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> 88 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> 89 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> 90 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 91 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 92 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 93 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 94 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 95 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 96 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 97 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 98 <field id="Dpo2" description="Delta O2" unit="uatm" /> 99 <field id="Heup" description="Euphotic layer depth" unit="m" /> 100 <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> 101 <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> 102 102 </group> 103 103
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