- Timestamp:
- 2012-11-27T15:42:24+01:00 (11 years ago)
- Location:
- branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES
- Files:
-
- 6 edited
-
EXP00/iodef.xml (modified) (7 diffs)
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EXP00/namelist (modified) (7 diffs)
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EXP00/namelist_pisces (modified) (8 diffs)
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EXP00/namelist_top (modified) (5 diffs)
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EXP00/xmlio_server.def (modified) (1 diff)
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cpp_ORCA2_OFF_PISCES.fcm (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/iodef.xml
r3295 r3680 19 19 <group id="ptrc_T" axis_ref="deptht" grid_ref="grid_T"> 20 20 <field id="DIC" description="Dissolved inorganic Concentration" unit="mmol/m3" /> 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" 21 <field id="Alkalini" description="Total Alkalinity Concentration" unit="mmol/m3" /> 22 22 <field id="O2" description="Oxygen Concentration" unit="mmol/m3" /> 23 23 <field id="CaCO3" description="Calcite Concentration" unit="mmol/m3" /> … … 38 38 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="mmol/m3" /> 39 39 <field id="NFe" description="Nano iron Concentration" unit="mmol/m3" /> 40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" />41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" />40 <field id="NCHL" description="Nano chlorophyl Concentration" unit="mg/m3" /> 41 <field id="DCHL" description="Diatoms chlorophyl Concentration" unit="mg/m3" /> 42 42 <field id="NO3" description="Nitrates Concentration" unit="mmol/m3" /> 43 43 <field id="NH4" description="Ammonium Concentration" unit="mmol/m3" /> … … 47 47 48 48 <group id="diad_T" axis_ref="none" grid_ref="grid_T"> 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="mol/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="mol/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="mol/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="mol/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="mol/m3/s" axis_ref="deptht" /> 60 <field id="PCAL" description="Calcite production" unit="mol/m3/s" axis_ref="deptht" /> 61 <field id="DCAL" description="Calcite dissolution" unit="mol/m3/s" axis_ref="deptht" /> 62 <field id="GRAZ" description="Grazing by zooplankton" unit="mol/m3/s" axis_ref="deptht" /> 63 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 64 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 65 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 66 <field id="MuNlight" description="Light limited growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 67 <field id="MuDlight" description="Light limited growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 68 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 69 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 70 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 71 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 72 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 73 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 74 <field id="Nfix" description="Nitrogen fixation at surface" unit="mol/m2/s" /> 75 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 76 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 77 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 78 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 79 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 80 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 81 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 82 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 83 <field id="Dpo2" description="Delta O2" unit="uatm" /> 84 <field id="Heup" description="Euphotic layer depth" unit="m" /> 85 <field id="Irondep" description="Iron deposition" unit="mol/m2/s" /> 86 </group> 49 <field id="PH" description="PH" unit="-" axis_ref="deptht" /> 50 <field id="CO3" description="Bicarbonates" unit="mol/m3" axis_ref="deptht" /> 51 <field id="CO3sat" description="CO3 saturation" unit="mol/m3" axis_ref="deptht" /> 52 <field id="PAR" description="Photosynthetically Available Radiation" unit="W/m2" axis_ref="deptht" /> 53 <field id="PPPHY" description="Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 54 <field id="PPPHY2" description="Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 55 <field id="PPNEWN" description="New Primary production of nanophyto" unit="molC/m3/s" axis_ref="deptht" /> 56 <field id="PPNEWD" description="New Primary production of diatoms" unit="molC/m3/s" axis_ref="deptht" /> 57 <field id="PBSi" description="Primary production of Si diatoms" unit="molSi/m3/s" axis_ref="deptht" /> 58 <field id="PFeN" description="Primary production of nano iron" unit="molFe/m3/s" axis_ref="deptht" /> 59 <field id="PFeD" description="Primary production of diatoms iron" unit="molFe/m3/s" axis_ref="deptht" /> 60 <field id="xfracal" description="Calcifying fraction" unit="-" axis_ref="deptht" /> 61 <field id="PCAL" description="Calcite production" unit="molC/m3/s" axis_ref="deptht" /> 62 <field id="DCAL" description="Calcite dissolution" unit="molC/m3/s" axis_ref="deptht" /> 63 <field id="GRAZ1" description="Grazing by microzooplankton" unit="molC/m3/s" axis_ref="deptht" /> 64 <field id="GRAZ2" description="Grazing by mesozooplankton" unit="molC/m3/s" axis_ref="deptht" /> 65 <field id="REMIN" description="Oxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 66 <field id="DENIT" description="Anoxic remineralization of OM" unit="molC/m3/s" axis_ref="deptht" /> 67 <field id="Nfix" description="Nitrogen fixation" unit="molN/m3/s" axis_ref="deptht" /> 68 <field id="Mumax" description="Maximum growth rate" unit="s-1" axis_ref="deptht" /> 69 <field id="MuN" description="Realized growth rate for nanophyto" unit="s-1" axis_ref="deptht" /> 70 <field id="MuD" description="Realized growth rate for diatomes" unit="s-1" axis_ref="deptht" /> 71 <field id="LNnut" description="Nutrient limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 72 <field id="LDnut" description="Nutrient limitation term in Diatoms" unit="-" axis_ref="deptht" /> 73 <field id="LNFe" description="Iron limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 74 <field id="LDFe" description="Iron limitation term in Diatoms" unit="-" axis_ref="deptht" /> 75 <field id="LNlight" description="Light limitation term in Nanophyto" unit="-" axis_ref="deptht" /> 76 <field id="LDlight" description="Light limitation term in Diatoms" unit="-" axis_ref="deptht" /> 77 <field id="Fe2" description="Iron II concentration" unit="nmol/L" axis_ref="deptht" /> 78 <field id="Fe3" description="Iron III concentration" unit="nmol/L" axis_ref="deptht" /> 79 <field id="FeL1" description="Complexed Iron concentration with L1" unit="nmol/L" axis_ref="deptht" /> 80 <field id="FeL2" description="Complexed Iron concentration with L2" unit="nmol/L" axis_ref="deptht" /> 81 <field id="FeP" description="Precipitated Iron III" unit="nmol/L" axis_ref="deptht" /> 82 <field id="TL1" description="Total L1 concentration" unit="nmol/L" axis_ref="deptht" /> 83 <field id="TL2" description="Total L2 concentration" unit="nmol/L" axis_ref="deptht" /> 84 <field id="pdust" description="dust concentration" unit="g/L" /> 85 <field id="Totlig" description="Total ligand concentation" unit="nmol/L" axis_ref="deptht" /> 86 <field id="Biron" description="Bioavailable iron" unit="nmol/L" axis_ref="deptht" /> 87 <field id="Sdenit" description="Nitrate reduction in the sediments" unit="molN/m2/s" /> 88 <field id="Ironice" description="Iron input/uptake due to sea ice" unit="molFe/m2/s" /> 89 <field id="HYDR" description="Iron input from hydrothemal vents" unit="molFe/m2/s" /> 90 <field id="EPC100" description="Export of carbon particles at 100 m" unit="mol/m2/s" /> 91 <field id="EPFE100" description="Export of biogenic iron at 100 m" unit="mol/m2/s" /> 92 <field id="EPSI100" description="Export of Silicate at 100 m" unit="mol/m2/s" /> 93 <field id="EPCAL100" description="Export of Calcite at 100 m" unit="mol/m2/s" /> 94 <field id="Cflx" description="DIC flux" unit="mol/m2/s" /> 95 <field id="Oflx" description="Oxygen flux" unit="mol/m2/s" /> 96 <field id="Kg" description="Gas transfer" unit="mol/m2/s/uatm" /> 97 <field id="Dpco2" description="Delta CO2" unit="uatm" /> 98 <field id="Dpo2" description="Delta O2" unit="uatm" /> 99 <field id="Heup" description="Euphotic layer depth" unit="m" /> 100 <field id="Irondep" description="Iron deposition from dust" unit="mol/m2/s" /> 101 <field id="Ironsed" description="Iron deposition from sediment" unit="mol/m2/s" axis_ref="deptht" /> 102 </group> 87 103 88 104 <!-- scalar --> … … 107 123 108 124 <group id="5d" output_freq="432000" output_level="10" enabled=".TRUE."> <!-- 5d files --> 109 110 <file id="5d_diad_T" name="auto" description="additional pisces diagnostics" >111 <field ref="Cflx" />112 <field ref="Oflx" />113 <field ref="Dpco2" />114 <field ref="Dpo2" />115 <field ref="Heup" />116 </file>117 118 125 </group> 119 126 120 127 <group id="1m" output_freq="-1" output_level="10" enabled=".TRUE."> <!-- real monthly files --> 121 128 122 <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > 123 <field ref="DIC" /> 124 <field ref="Alkalini" /> 125 <field ref="O2" /> 126 <field ref="NCHL" /> 127 <field ref="DCHL" /> 128 <field ref="Fer" /> 129 <field ref="NO3" /> 130 </file> 131 132 </group> 133 134 <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> 135 </group> 136 137 <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> 138 </group> 139 140 <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> 141 </group> 142 143 <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> 144 </group> 145 146 <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 147 148 <file id="1y_ptrc_T" name="auto" description="pisces sms variables" > 129 <file id="1m_ptrc_T" name="auto" description="pisces sms variables" > 149 130 <field ref="DIC" /> 150 131 <field ref="Alkalini" /> … … 173 154 </file> 174 155 175 <file id="1 y_diad_T" name="auto" description="additional pisces diagnostics" >156 <file id="1m_diad_T" name="auto" description="additional pisces diagnostics" > 176 157 <field ref="PH" /> 177 158 <field ref="CO3" /> 178 159 <field ref="CO3sat" /> 179 <field ref="PAR" 160 <field ref="PAR" /> 180 161 <field ref="PPPHY" /> 181 162 <field ref="PPPHY2" /> … … 185 166 <field ref="PFeN" /> 186 167 <field ref="PFeD" /> 168 <field ref="xfracal" /> 187 169 <field ref="PCAL" /> 188 170 <field ref="DCAL" /> 189 <field ref="GRAZ" /> 190 <field ref="Mumax" /> 191 <field ref="MuN" /> 192 <field ref="MuD" /> 193 <field ref="MuNlight" /> 194 <field ref="MuDlight" /> 195 <field ref="LNnut" /> 196 <field ref="LDnut" /> 197 <field ref="LNFe" /> 198 <field ref="LDFe" /> 199 <field ref="LNlight" /> 200 <field ref="LDlight" /> 171 <field ref="GRAZ1" /> 172 <field ref="GRAZ2" /> 201 173 <field ref="EPC100" /> 202 174 <field ref="EPFE100" /> … … 210 182 <field ref="Heup" /> 211 183 <field ref="Irondep" /> 184 <field ref="Ironsed" /> 185 <field ref="Ironice" /> 212 186 <field ref="Nfix" /> 187 <field ref="MuN" /> 188 <field ref="MuD" /> 189 <field ref="LNnut" /> 190 <field ref="LDnut" /> 191 <field ref="LNFe" /> 192 <field ref="LDFe" /> 193 <field ref="LNlight" /> 194 <field ref="LDlight" /> 195 <field ref="pdust" /> 196 <field ref="Fe2" /> 197 <field ref="Fe3" /> 198 <field ref="FeL1" /> 199 <field ref="FeL2" /> 200 <field ref="FeP" /> 201 <field ref="TL1" /> 202 <field ref="TL2" /> 203 <field ref="Sdenit" /> 204 <field ref="Totlig" /> 213 205 </file> 214 206 </group> 207 208 <group id="2m" output_freq="-2" output_level="10" enabled=".TRUE."> <!-- real 2m files --> 209 </group> 210 211 <group id="3m" output_freq="-3" output_level="10" enabled=".TRUE."> <!-- real 3m files --> 212 </group> 213 214 <group id="4m" output_freq="-4" output_level="10" enabled=".TRUE."> <!-- real 4m files --> 215 </group> 216 217 <group id="6m" output_freq="-6" output_level="10" enabled=".TRUE."> <!-- real 6m files --> 218 </group> 219 220 <group id="1y" output_freq="-12" output_level="10" enabled=".TRUE."> <!-- real yearly files --> 215 221 </group> 216 222 -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist
r3651 r3680 24 24 &namrun ! parameters of the run 25 25 !----------------------------------------------------------------------- 26 nn_no = 0 ! job number (no more used...)26 nn_no = 0 ! job number 27 27 cn_exp = "PISCES" ! experience name 28 28 nn_it000 = 1 ! first time step 29 29 nn_itend = 1460 ! last time step (std 5475) 30 nn_date0 = 010101 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or1)30 nn_date0 = 010101 ! initial calendar date yymmdd (used if nn_rstctl=1) 31 31 nn_leapy = 0 ! Leap year calendar (1) or not (0) 32 32 ln_rstart = .false. ! start from rest (F) or from a restart file (T) 33 nn_rstctl = 0 ! restart control => activated only if ln_rstart = T 34 ! = 0 nn_date0 read in namelist ; nn_it000 : read in namelist 35 ! = 1 nn_date0 read in namelist ; nn_it000 : check consistancy between namelist and restart 36 ! = 2 nn_date0 read in restart ; nn_it000 : check consistancy between namelist and restart 33 nn_rstctl = 0 ! restart control = 0 nn_it000 is not compared to the restart file value 34 ! = 1 use nn_date0 in namelist (not the value in the restart file) 35 ! = 2 calendar parameters read in the restart file 37 36 cn_ocerst_in = "restart" ! suffix of ocean restart name (input) 38 37 cn_ocerst_out = "restart" ! suffix of ocean restart name (output) … … 65 64 &namzgr_sco ! s-coordinate or hybrid z-s-coordinate 66 65 !----------------------------------------------------------------------- 67 rn_sbot_min = 300. ! minimum depth of s-bottom surface (>0) (m) 68 rn_sbot_max = 5250. ! maximum depth of s-bottom surface (= ocean depth) (>0) (m) 69 rn_theta = 6.0 ! surface control parameter (0<=rn_theta<=20) 70 rn_thetb = 0.75 ! bottom control parameter (0<=rn_thetb<= 1) 71 rn_rmax = 0.15 ! maximum cut-off r-value allowed (0<rn_max<1) 72 ln_s_sigma = .false. ! hybrid s-sigma coordinates 73 rn_bb = 0.8 ! stretching with s-sigma 74 rn_hc = 150.0 ! critical depth with s-sigma 66 ln_s_sh94 = .true. ! Song & Haidvogel 1994 hybrid S-sigma (T)| 67 ln_s_sf12 = .false. ! Siddorn & Furner 2012 hybrid S-z-sigma (T)| if both are false the NEMO tanh stretching is applied 68 ln_sigcrit = .false. ! use sigma coordinates below critical depth (T) or Z coordinates (F) for Siddorn & Furner stretch 69 ! stretching coefficients for all functions 70 rn_sbot_min = 10.0 ! minimum depth of s-bottom surface (>0) (m) 71 rn_sbot_max = 7000.0 ! maximum depth of s-bottom surface (= ocean depth) (>0) (m) 72 rn_hc = 150.0 ! critical depth for transition to stretched coordinates 73 !!!!!!! Envelop bathymetry 74 rn_rmax = 0.3 ! maximum cut-off r-value allowed (0<r_max<1) 75 !!!!!!! SH94 stretching coefficients (ln_s_sh94 = .true.) 76 rn_theta = 6.0 ! surface control parameter (0<=theta<=20) 77 rn_bb = 0.8 ! stretching with SH94 s-sigma 78 !!!!!!! SF12 stretching coefficient (ln_s_sf12 = .true.) 79 rn_alpha = 4.4 ! stretching with SF12 s-sigma 80 rn_efold = 0.0 ! efold length scale for transition to stretched coord 81 rn_zs = 1.0 ! depth of surface grid box 82 ! bottom cell depth (Zb) is a linear function of water depth Zb = H*a + b 83 rn_zb_a = 0.024 ! bathymetry scaling factor for calculating Zb 84 rn_zb_b = -0.2 ! offset for calculating Zb 85 !!!!!!!! Other stretching (not SH94 or SF12) [also uses rn_theta above] 86 rn_thetb = 1.0 ! bottom control parameter (0<=thetb<= 1) 75 87 / 76 88 !----------------------------------------------------------------------- … … 147 159 ! =2 annual global mean of e-p-r set to zero 148 160 ! =3 global emp set to zero and spread out over erp area 149 ln_cdgw = .false. ! Neutral drag coefficient read from wave model (T => fill namsbc_wave ) 161 ln_wave = .false. ! Activate coupling with wave (either Stokes Drift or Drag coefficient, or both) (T => fill namsbc_wave) 162 ln_cdgw = .false. ! Neutral drag coefficient read from wave model (T => fill namsbc_wave) 163 ln_sdw = .false. ! Computation of 3D stokes drift (T => fill namsbc_wave) 150 164 / 151 165 !----------------------------------------------------------------------- … … 545 559 ln_traadv_ubs = .false. ! UBS scheme 546 560 ln_traadv_qck = .false. ! QUICKEST scheme 547 / 548 !---------------------------------------------------------------------------------- 549 &namtra_ldf ! lateral diffusion scheme for tracers 550 !---------------------------------------------------------------------------------- 551 ! ! Operator type: 552 ln_traldf_lap = .true. ! laplacian operator 553 ln_traldf_bilap = .false. ! bilaplacian operator 554 ! ! Direction of action: 555 ln_traldf_level = .false. ! iso-level 556 ln_traldf_hor = .false. ! horizontal (geopotential) (needs "key_ldfslp" when ln_sco=T) 557 ln_traldf_iso = .true. ! iso-neutral (needs "key_ldfslp") 558 ! ! Griffies parameters (all need "key_ldfslp") 559 ln_traldf_grif = .false. ! use griffies triads 560 ln_traldf_gdia = .false. ! output griffies eddy velocities 561 ln_triad_iso = .false. ! pure lateral mixing in ML 562 ln_botmix_grif = .false. ! lateral mixing on bottom 563 ! ! Coefficients 564 ! Eddy-induced (GM) advection always used with Griffies; otherwise needs "key_traldf_eiv" 565 ! Value rn_aeiv_0 is ignored unless = 0 with Held-Larichev spatially varying aeiv 566 ! (key_traldf_c2d & key_traldf_eiv & key_orca_r2, _r1 or _r05) 567 rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s] 561 ln_traadv_msc_ups= .false. ! use upstream scheme within muscl 562 / 563 !----------------------------------------------------------------------- 564 &namtra_ldf ! lateral diffusion scheme for tracer 565 !----------------------------------------------------------------------- 566 ! ! Type of the operator : 567 ln_traldf_lap = .true. ! laplacian operator 568 ln_traldf_bilap = .false. ! bilaplacian operator 569 ! ! Direction of action : 570 ln_traldf_level = .false. ! iso-level 571 ln_traldf_hor = .false. ! horizontal (geopotential) (require "key_ldfslp" when ln_sco=T) 572 ln_traldf_iso = .true. ! iso-neutral (require "key_ldfslp") 573 ln_traldf_grif = .false. ! griffies skew flux formulation (require "key_ldfslp") 574 ln_traldf_gdia = .false. ! griffies operator strfn diagnostics (require "key_ldfslp") 575 ln_triad_iso = .true. ! griffies operator calculates triads twice => pure lateral mixing in ML (require "key_ldfslp") 576 ln_botmix_grif = .false. ! griffies operator with lateral mixing on bottom (require "key_ldfslp") 577 ! Coefficient 568 578 rn_aht_0 = 2000. ! horizontal eddy diffusivity for tracers [m2/s] 569 579 rn_ahtb_0 = 0. ! background eddy diffusivity for ldf_iso [m2/s] 570 ! (normally=0; not used with Griffies)580 rn_aeiv_0 = 2000. ! eddy induced velocity coefficient [m2/s] (require "key_traldf_eiv") 571 581 / 572 582 !----------------------------------------------------------------------- … … 652 662 sn_sal = 'dyna_grid_T' , 120 , 'vosaline' , .true. , .true. , 'yearly' , '' , '' 653 663 sn_mld = 'dyna_grid_T' , 120 , 'somixhgt' , .true. , .true. , 'yearly' , '' , '' 654 sn_emp = 'dyna_grid_T' , 120 , 'sowaflcd' , .true. , .true. , 'yearly' , '' , '' 664 sn_emp = 'dyna_grid_T' , 120 , 'sowaflup' , .true. , .true. , 'yearly' , '' , '' 665 sn_emps = 'dyna_grid_T' , 120 , 'sowaflcd' , .true. , .true. , 'yearly' , '' , '' 655 666 ! sn_emp = 'dyna_grid_T' , 120 , 'sowaflup' , .true. , .true. , 'yearly' , '' , '' ! v3.5+ 656 667 ! sn_sfx = 'dyna_grid_T' , 120 , 'sosfldow' , .true. , .true. , 'yearly' , '' , '' ! v3.5+ … … 831 842 nn_bench = 0 ! Bench mode (1/0): CAUTION use zero except for bench 832 843 ! (no physical validity of the results) 833 nn_timing = 1! timing by routine activated (=1) creates timing.output file, or not (=0)844 nn_timing = 0 ! timing by routine activated (=1) creates timing.output file, or not (=0) 834 845 / 835 846 … … 1003 1014 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 1004 1015 sn_cdg = 'cdg_wave' , 1 , 'drag_coeff' , .true. , .false. , 'daily' ,'' , '' 1016 sn_usd = 'sdw_wave' , 1 , 'u_sd2d' , .true. , .false. , 'daily' ,'' , '' 1017 sn_vsd = 'sdw_wave' , 1 , 'v_sd2d' , .true. , .false. , 'daily' ,'' , '' 1018 sn_wn = 'sdw_wave' , 1 , 'wave_num' , .true. , .false. , 'daily' ,'' , '' 1005 1019 ! 1006 1020 cn_dir_cdg = './' ! root directory for the location of drag coefficient files -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_pisces
r3632 r3680 40 40 ferat3 = 10.E-6 ! Fe/C in zooplankton 41 41 wsbio2 = 30. ! Big particles sinking speed 42 niter1max = 1 ! Maximum number of iterations for POC 43 niter2max = 1 ! Maximum number of iterations for GOC 42 44 / 43 45 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 44 46 &nampislim ! parameters for nutrient limitations 45 47 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 46 conc0 = 1.e-6 ! Phosphate half saturation 47 conc1 = 8E-6 ! Phosphate half saturation for diatoms 48 conc2 = 1E-9 ! Iron half saturation for phyto 49 conc2m = 3E-9 ! Max iron half saturation for phyto 50 conc3 = 3E-9 ! Iron half saturation for diatoms 51 conc3m = 8E-9 ! Maxi iron half saturation for diatoms 48 concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton 49 concdno3 = 3.E-6 ! Phosphate half saturation for diatoms 50 concnnh4 = 1.E-7 ! NH4 half saturation for phyto 51 concdnh4 = 3.E-7 ! NH4 half saturation for diatoms 52 concnfer = 1.E-9 ! Iron half saturation for phyto 53 concdfer = 3.E-9 ! Iron half saturation for diatoms 54 concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria 55 concbnh4 = 2.5E-8 ! NH4 half saturation for phyto 56 concbno3 = 2.5E-7 ! Phosphate half saturation for diatoms 52 57 xsizedia = 1.E-6 ! Minimum size criteria for diatoms 53 58 xsizephy = 1.E-6 ! Minimum size criteria for phyto 54 concnnh4 = 1.E-7 ! NH4 half saturation for phyto55 concdnh4 = 8.E-7 ! NH4 half saturationfor diatoms59 xsizern = 3.0 ! Size ratio for nanophytoplankton 60 xsizerd = 3.0 ! Size ratio for diatoms 56 61 xksi1 = 2.E-6 ! half saturation constant for Si uptake 57 xksi2 = 3.33E-6 ! half saturation constant for Si/C62 xksi2 = 20E-6 ! half saturation constant for Si/C 58 63 xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization 59 concfebac = 1.E-11 ! Half-saturation for Fe limitation of Bacteria60 64 qnfelim = 7.E-6 ! Optimal quota of phyto 61 65 qdfelim = 7.E-6 ! Optimal quota of diatoms 62 caco3r = 0.16 ! mean rain ratio 63 / 66 caco3r = 0.3 ! mean rain ratio 67 / 68 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 69 &nampisopt ! parameters for optics 70 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 71 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 72 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 73 sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' 74 cn_dir = './' ! root directory for the location of the dynamical files 75 ln_varpar = .true. ! boolean for PAR variable 76 parlux = 0.43 ! Fraction of shortwave as PAR 77 / 64 78 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 65 79 &nampisprod ! parameters for phytoplankton growth … … 69 83 excret = 0.05 ! excretion ratio of phytoplankton 70 84 excret2 = 0.05 ! excretion ratio of diatoms 71 ln_newprod = .true. ! Enable new parame. of production (T/F)85 ln_newprod = .true. ! Enable new parame. of production (T/F) 72 86 bresp = 0.00333 ! Basal respiration rate 73 87 chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton 74 88 chlcdm = 0.05 ! Minimum Chl/C in diatoms 75 chlcmin = 0.00 33! Maximum Chl/c in phytoplankton89 chlcmin = 0.004 ! Maximum Chl/c in phytoplankton 76 90 fecnm = 40E-6 ! Maximum Fe/C in nanophytoplankton 77 91 fecdm = 40E-6 ! Minimum Fe/C in diatoms 78 grosip = 0.15 1! mean Si/C ratio92 grosip = 0.159 ! mean Si/C ratio 79 93 / 80 94 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 81 95 &nampismort ! parameters for phytoplankton sinks 82 96 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 83 wchl = 0.001 ! quadratic mortality of phytoplankton 84 wchld = 0.02 ! maximum quadratic mortality of diatoms 97 wchl = 0.01 ! quadratic mortality of phytoplankton 98 wchld = 0.01 ! maximum quadratic mortality of diatoms 99 wchldm = 0.03 ! maximum quadratic mortality of diatoms 85 100 mprat = 0.01 ! phytoplankton mortality rate 86 101 mprat2 = 0.01 ! Diatoms mortality rate 87 mpratm = 0.01 ! Phytoplankton minimum mortality rate88 102 / 89 103 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 90 104 &nampismes ! parameters for mesozooplankton 91 105 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 92 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts93 grazrat2 = 0.7 106 part2 = 0.75 ! part of calcite not dissolved in mesozoo guts 107 grazrat2 = 0.75 ! maximal mesozoo grazing rate 94 108 resrat2 = 0.005 ! exsudation rate of mesozooplankton 95 109 mzrat2 = 0.03 ! mesozooplankton mortality rate … … 102 116 xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton 103 117 xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton 104 xthresh2 = 2E-7! Food threshold for grazing118 xthresh2 = 3E-7 ! Food threshold for grazing 105 119 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 106 120 epsher2 = 0.3 ! Efficicency of Mesozoo growth … … 115 129 grazrat = 3.0 ! maximal zoo grazing rate 116 130 resrat = 0.03 ! exsudation rate of zooplankton 117 mzrat = 0.00 1! zooplankton mortality rate131 mzrat = 0.004 ! zooplankton mortality rate 118 132 xpref2c = 0.1 ! Microzoo preference for POM 119 133 xpref2p = 1. ! Microzoo preference for Nanophyto … … 122 136 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton 123 137 xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton 124 xthresh = 2.E-7 ! Food threshold for feeding138 xthresh = 3.E-7 ! Food threshold for feeding 125 139 xkgraz = 20.E-6 ! half sturation constant for grazing 126 140 epsher = 0.3 ! Efficiency of microzoo growth … … 129 143 / 130 144 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 145 &nampisfer ! parameters for iron chemistry 146 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 147 ln_fechem = .false. ! complex iron chemistry ( T/F ) 148 ln_ligvar = .true. ! variable ligand concentration 149 xlam1 = 0.005 ! scavenging rate of Iron 150 xlamdust = 150.0 ! Scavenging rate of dust 151 ligand = 0.6E-9 ! Ligands concentration 152 / 153 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 131 154 &nampisrem ! parameters for remineralization 132 155 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 133 xremik = 0. 25 ! remineralization rate of DOC156 xremik = 0.35 ! remineralization rate of DOC 134 157 xremip = 0.025 ! remineralisation rate of POC 135 158 nitrif = 0.05 ! NH4 nitrification rate 136 159 xsirem = 0.003 ! remineralization rate of Si 137 xsiremlab = 0.025 ! fast remineralization rate of Si 138 xsilab = 0.31 ! Fraction of labile biogenic silica 139 xlam1 = 0.005 ! scavenging rate of Iron 160 xsiremlab = 0.03 ! fast remineralization rate of Si 161 xsilab = 0.5 ! Fraction of labile biogenic silica 140 162 oxymin = 1.E-6 ! Half-saturation constant for anoxia 141 ligand = 0.6E-9 ! Ligands concentration142 163 / 143 164 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 148 169 / 149 170 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 150 &nampiss ed! parameters for inputs deposition171 &nampissbc ! parameters for inputs deposition 151 172 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 152 173 ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! 153 174 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! 154 175 sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' 155 sn_riverdic = 'river.orca' , -12 , 'riverdic' , .false. , .true. , 'yearly' , '' , '' 156 sn_riverdoc = 'river.orca' , -12 , 'riverdoc' , .false. , .true. , 'yearly' , '' , '' 176 sn_solub = 'solubility.orca' , -12 , 'solubility1' , .false. , .true. , 'yearly' , '' , '' 177 sn_riverdic = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , '' 178 sn_riverdoc = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , '' 179 sn_riverdin = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , '' 180 sn_riverdon = 'river.orca' , 120 , 'riverdon' , .true. , .true. , 'yearly' , '' , '' 181 sn_riverdip = 'river.orca' , 120 , 'riverdip' , .true. , .true. , 'yearly' , '' , '' 182 sn_riverdop = 'river.orca' , 120 , 'riverdop' , .true. , .true. , 'yearly' , '' , '' 183 sn_riverdsi = 'river.orca' , 120 , 'riverdsi' , .true. , .true. , 'yearly' , '' , '' 157 184 sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' 158 185 sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , '' 186 sn_hydrofe = 'hydrofe' , -12 , 'epsdb' , .false. , .true. , 'yearly' , '' , '' 159 187 ! 160 188 cn_dir = './' ! root directory for the location of the dynamical files 161 189 ln_dust = .true. ! boolean for dust input from the atmosphere 162 ln_river = .false. ! boolean for river input of nutrients 190 ln_solub = .true. ! boolean for variable solubility of atm. Iron 191 ln_river = .true. ! boolean for river input of nutrients 163 192 ln_ndepo = .true. ! boolean for atmospheric deposition of N 164 193 ln_ironsed = .true. ! boolean for Fe input from sediments 194 ln_ironice = .true. ! boolean for Fe input from sea ice 195 ln_hydrofe = .false. ! boolean for from hydrothermal vents 165 196 sedfeinput = 1E-9 ! Coastal release of Iron 166 197 dustsolub = 0.02 ! Solubility of the dust 167 wdust = 2.0 ! Dust sinking speed 198 wdust = 2.0 ! Dust sinking speed 199 icefeinput = 15E-9 ! Iron concentration in sea ice 168 200 nitrfix = 1E-7 ! Nitrogen fixation rate 169 201 diazolight = 50. ! Diazotrophs sensitivity to light (W/m2) 170 202 concfediaz = 1.E-10 ! Diazotrophs half-saturation Cste for Iron 203 hratio = 9.E-5 ! Fe to 3He ratio assumed for vent iron supply 171 204 / 172 205 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 175 208 xkr_eta = 1.17 ! Sinking exponent 176 209 xkr_zeta = 2.28 ! N content exponent 210 xkr_ncontent = 5.7E-6 ! N content factor 177 211 xkr_mass_min = 0.0002 ! Minimum mass for Aggregates 178 212 xkr_mass_max = 1. ! Maximum mass for Aggregates -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_top
r3319 r3680 16 16 ln_rsttr = .false. ! start from a restart file (T) or not (F) 17 17 nn_rsttr = 0 ! restart control = 0 initial time step is not compared to the restart file value 18 19 18 ! = 1 do not use the value in the restart file 19 ! = 2 calendar parameters read in the restart file 20 20 cn_trcrst_in = "restart_trc" ! suffix of pass. sn_tracer restart name (input) 21 21 cn_trcrst_out = "restart_trc" ! suffix of pass. sn_tracer restart name (output) 22 ln_trcdta = .true. 22 ln_trcdta = .true. ! Initialisation from data input file (T) or not (F) 23 23 ln_trcdmp = .false. ! add a damping termn (T) or not (F) 24 24 ! 25 ! ! name ! title of the field ! initial data! initial data ! save !26 ! ! ! ! units! from file ! or not !27 ! ! ! !! or not ! !25 ! ! name ! title of the field ! units ! initial data ! save ! 26 ! ! ! ! ! from file ! or not ! 27 ! ! ! ! ! or not ! ! 28 28 sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .true. 29 29 sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .true. … … 35 35 sn_tracer(8) = 'PHY ' , 'Nanophytoplankton Concentration ', 'mol-C/L' , .false. , .true. 36 36 sn_tracer(9) = 'ZOO ' , 'Microzooplankton Concentration ', 'mol-C/L' , .false. , .true. 37 sn_tracer(10) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , . true., .true.37 sn_tracer(10) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , .false. , .true. 38 38 sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .true. 39 39 sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .true. … … 59 59 sn_trcdta(1) = 'data_DIC_nomask' , -12 , 'DIC' , .false. , .true. , 'yearly' , '' , '' 60 60 sn_trcdta(2) = 'data_Alkalini_nomask' , -12 , 'Alkalini', .false. , .true. , 'yearly' , '' , '' 61 sn_trcdta(3) = 'data_O2_nomask' , -1 , 'O2' , .true. , .true. , 'yearly' , '' , '' 62 sn_trcdta(5) = 'data_PO4_nomask' , -1 , 'PO4' , .true. , .true. , 'yearly' , '' , '' 63 sn_trcdta(7) = 'data_Si_nomask' , -1 , 'Si' , .true. , .true. , 'yearly' , '' , '' 64 sn_trcdta(10) = 'data_DOC_nomask' , -12 , 'DOC' , .false. , .true. , 'yearly' , '' , '' 61 sn_trcdta(3) = 'data_1m_O2_nomask' , -1 , 'O2' , .true. , .true. , 'yearly' , '' , '' 62 sn_trcdta(5) = 'data_1m_PO4_nomask' , -1 , 'PO4' , .true. , .true. , 'yearly' , '' , '' 63 sn_trcdta(7) = 'data_1m_Si_nomask' , -1 , 'Si' , .true. , .true. , 'yearly' , '' , '' 65 64 sn_trcdta(14) = 'data_Fer_nomask' , -12 , 'Fer' , .false. , .true. , 'yearly' , '' , '' 66 sn_trcdta(23) = 'data_ NO3_nomask', -1 , 'NO3' , .true. , .true. , 'yearly' , '' , ''65 sn_trcdta(23) = 'data_1m_NO3_nomask' , -1 , 'NO3' , .true. , .true. , 'yearly' , '' , '' 67 66 ! 68 67 cn_dir = './' ! root directory for the location of the data files … … 72 71 rn_trfac(5) = 122.0e-06 ! - - - - 73 72 rn_trfac(7) = 1.0e-06 ! - - - - 74 rn_trfac(10) = 1.0 ! - - - -75 73 rn_trfac(14) = 1.0 ! - - - - 76 74 rn_trfac(23) = 7.6e-06 ! - - - - … … 85 83 ln_trcadv_ubs = .false. ! UBS scheme 86 84 ln_trcadv_qck = .false. ! QUICKEST scheme 85 ln_traadv_msc_ups= .false. ! use upstream scheme within muscl 87 86 / 88 87 !----------------------------------------------------------------------- -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/xmlio_server.def
r2528 r3680 30 30 ! setting nn_nchunks_k = jpk will give a chunk size of 1 in the vertical which 31 31 ! is optimal for postprocessing which works exclusively with horizontal slabs 32 ln_nc4zip = . TRUE. ! (T) use netcdf4 chunking and compression32 ln_nc4zip = .false. ! (T) use netcdf4 chunking and compression 33 33 ! (F) ignore chunking information and produce netcdf3-compatible files 34 34 / -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/cpp_ORCA2_OFF_PISCES.fcm
r3294 r3680 1 bld::tool::fppkeys key_trabbl key_orca_r2 key_ldfslp key_traldf_c2d key_traldf_eiv key_top key_offline key_pisces key_iomput 1 bld::tool::fppkeys key_trabbl key_orca_r2 key_ldfslp key_traldf_c2d key_traldf_eiv key_top key_offline key_pisces key_iomput
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